ID:

dsi_29691

 Coordinate:

3r:23803879-23804019 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.7 -18.7

Flybase annnotation

five_prime_UTR [3r_23803706_23803833_+]; CDS [3r_23803834_23803878_+]; CDS [3r_23804020_23804509_+]; exon [3r_23804020_23804509_+]; exon [3r_23803706_23803878_+]; intron [3r_23803879_23804019_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTAAAATGGTAAACTCGAATCAGAACGGCAACTCCAATGGCCATGATGATGTAAGTATTGGTTATTAAGGGTCTAGAAATTTCGTGCAAACGGGTGTCTCGCCTTGCCGGTCGCCATTTTGAAAATTACGCATGTGTCTCAAGGGCGGAAAGTGAGGTTATGTACAGTCATTGATAAAATCAATAATTTAGGACTTTGCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTT
***************************************************************************************......(((....(((((((...(((((..(((((....(((....)))..))))))))))...)))))))....)))...************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
......TGGTGAACTCGAACCAGAACGGCAAC................................................................................................................................................................................................................. 26 2 1 5.00 5 4 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................AATTTAGGACTTTGCTCAGGACTCC................................ 25 0 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................ATTTAGGACTTTGCTCAGGAC................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.TAAAATGGTAAACTCGAACCAGAACGGC.................................................................................................................................................................................................................... 28 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
..................ATCAGAACGGCAACTCCAATG.......................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
..................ATCAGAACGGCAACTCCAATGGCC....................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACCGAGCCGGAGCATAT............ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCATCACCGAGCCGGAGC................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGACTTTGCTCAGGACTCCATCAC........................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................GGCGGAAAGTGAGGTTATGTACAGT......................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCATCACCGAGCCGGAGCA............... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
GTAAAATGGTAAACTCGA............................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................ATCAGAACGGCAACTCCAATGGCCA...................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................TCAGAACGGCAACTCCAATGG......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGACTTTGCTCAGGACTCCATCA............................ 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......TGGTAAACTCGAATCAGAACGGCAAC................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........AACTCGAATCAGAACGGCAACTCCAA............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CACCGAGCCGGAGCATATGCGCAAGC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AAAATTACGCATGTGTCTCA.................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......GGTAAACTCGAACCAGAAC....................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....ATGGTAAACTCGAACCAGAACGGCAAC................................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GATGACTTTGCTCAGGACTCC................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGACTTTGCTCAGGACTCC................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAACGGGTGTCTCGCCTT........................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............TCGAATCAGAACGGCAACT................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................AGGACTTTGCTCAGTACTC................................. 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................GGTCGCCATTTTGAAAAT................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......GGTAAACTCGAATCAGAACGGCAACTC............................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAGGACTCCATCACCGAGCCGGAGC................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACCGAGCCGGAGCATATG........... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................GGACTCCATCACCGAGCCGGAGC................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGACTCCATCACCGAGCCGGAGCATATG........... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................AGCCGGAGCATATGCGCAAGCTG.. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGTCACCTTCACCGAGCCGGA.................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................AAGGGTGGAAAGTGA...................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................ATGATGTAAGTCTTG..................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................CTCGCTTGGCCGGTCGCGA............................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................AAAATCAATATCTTCGGACT.............................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................CGTCTCGAGGGCGGAA........................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATTTTACCATTTGAGCTTAGTCTTGCCGTTGAGGTTACCGGTACTACTACATTCATAACCAATAATTCCCAGATCTTTAAAGCACGTTTGCCCACAGAGCGGAACGGCCAGCGGTAAAACTTTTAATGCGTACACAGAGTTCCCGCCTTTCACTCCAATACATGTCAGTAACTATTTTAGTTATTAAATCCTGAAACGAGTCCTGAGGTAGTGGCTCGGCCTCGTATACGCGTTCGACAA
*************************************************************************......(((....(((((((...(((((..(((((....(((....)))..))))))))))...)))))))....)))...*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................................CTCCAATAGATCTCAGT....................................................................... 17 2 8 0.50 4 1 2 1 0 0 0 0
................................................................................................................................................................ACATGTCAGTAAATATTTAA............................................................. 20 2 6 0.17 1 1 0 0 0 0 0 0
.........................................................................................................................................................CTCCAATAGATCTCAGTG...................................................................... 18 3 20 0.15 3 1 0 0 0 0 1 1
.................TTATTTCTGCCGTTGAGGTTA........................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0
.......................................................................AGATCTTTAATGCAC........................................................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0 0 0
.........................................................................................................................................................CTCCAATAGATCTCAG........................................................................ 16 2 20 0.10 2 2 0 0 0 0 0 0
..................................................................................GCAGGTTTCCCCACAGAGG............................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 1 0 0
..................................................................................................................................GTACACAGATTTCCC................................................................................................ 15 1 11 0.09 1 1 0 0 0 0 0 0
................................AGGCTACCGGTACTTCTA............................................................................................................................................................................................... 18 2 15 0.07 1 1 0 0 0 0 0 0
.......................................................................................................AACGGCCTGCGGTAAAG......................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:23803829-23804069 + dsi_29691 G-TAAAATGG-TAA--------AC------TCGAATCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTATT--GG-TT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCG-TGCAAACGGGTGTCTCG-----------------------------------------------CCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATGTAC-AGTCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAC------------TT-TGCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTT
droSec2 scaffold_22:1028618-1028858 + G-TAAAATGG-TGA--------AC------TCGAACCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTATT--GG-TT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCG-TGCAAACTGGTGTCTCG-----------------------------------------------GCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATGTAC-AGCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAT------------TT-TGCTCAGGACTCCATCACCGAGCCAGAGCATATGCGCAAGCTGTT
dm3 chr3R:24426235-24426477 + G-TAAAATGG-TGA--------ACTCGAACCAGAACCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTAGT--GG-AT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCC-TGTAAGCTGGTGTCTCG-----------------------------------------------CCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATG-----GCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAC------------TT-TCCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTT
droEre2 scaffold_4820:3607127-3607373 - G-TAAAATGG-TGA--------ATTCGAACCAGAATCAGAACGGCAACTCCAACGGCC---ATGATGATGTAAGTAGT--GC-AT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCC-TGCAAACTAGAGTCTCG-----------------------------------------------CTTTACCGGTAGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CGG--GCGAA--A-ACTGAGGTTAAGTAC-GGCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------CGAT------------TT-TCCTTAGGACTCCATCACCGAGCCGGAGCATATGCGCAAACTGTT
droYak3 3R:22067345-22067589 - A-AAAAATGG-TGA--------AC------TCGAACCAGAACGGCAACTCCAATGGCCATGATGAGGATGTAAGTAGT--GC-AT--AT-AA-----G-----AAG--ACT-AG--------AAA--------TT-TCC-TGCAAACTAGTGGCTCG-----------------------------------------------CCCTACCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CAG--GCGGA--A-AGTGAGGTTAAGAAC-GGCTATT------G----------------A----T------AAAAATCAATAAT---TTA-------------GGAA------------TT-CCCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAACTGTT
droEug1 scf7180000409787:1155195-1155438 - G-TAAAATGG-TGA--------AT---AACTCGAACCAAAACGGCGACTCCAACGGCC---ACGACGATGTAAGTAC------ATGGAT-TA-----A-----AGG--TTCTAT-----TTTAAG--------TT-TTA-TACGAGCTGGTGTCTCA-----------------------------------------------CCATTCTGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--GGG--GCAGA--A-AATGAGGTTAGGTT------GTT------G-----------G----A-----------GAAAATCAATAAT---TCA-------------TGAT------------TCTTTTCCAGGACTCTATCACTGAGCCGGAGCATATGCGCAAATTGTT
droBia1 scf7180000302075:2351840-2352091 - G-AGAAATGG-TGA--------AC---AACTCGAACCAGAACGGCAACTCCAATGGCC---ACGATGATGTAAGTAGA--G--------------CGGAAATGGGG--TT----------------TTTCTAGTC-TTA-TGCGGGCGGGTGTCTCG-----------------------------------------------CCTCACCGGTCGCCATTTTGAA-A------T--T-ACGCATGTGTCTCG--GGG--GCAGA--A-AGTGAGGTTAGGTCG-CA-----CGG--------------TGTCGGATAG-A------AAAAATCAATAAT---TAA-------------TGAT------------TTTCCCCTAGGACTCCATCACTGAGCCGGAGCATATGCGCAAACTGTT
droTak1 scf7180000415383:26216-26495 - G-TAAAATGG-TGA--------AC---AACTCGAACCAGAACGGCAACTCCAATGGCC---ACGATGATGTAAGTAGT--GG-G----C-TA-----A-AAC-GGG--TTT-AA--------TAG--------TT-TTT-TACGCACTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--GGGGGGCTGA--A-AGTGAGGTTAGGTCT-G----TT-GGGTCGCTGGAAGGAGTG----A--AAAAAAATAGAAAATCAATAAT---TTA-------------TTTATTTTCTTCAT-TTT-CCTGTAGGACTCCATCACCGAGCCGGAGCATATGCGCAAATTGTT
droEle1 scf7180000491280:3496516-3496763 - G-TAAAATGG-TGA--------AC---AACTCGAACCAGAATGGAAATTCCAACGGCC---ACGATGATGTAAGTACC--CCCAT--AT-AT----AG-------G--AAT-AGA-------AAA--------AA-CAA-TGCGTGCTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCCCA--TGGGGGCAGAAGA-AGTGAGGTTAGGTCT-GA-----AGG--------------TG----A-----------AAAAATCAATAAC---TTA-------------CGAT------------TT-CGCTTAGGATTCCATCACCGAGCCGGAGCATATGCGGAAATTGTT
droRho1 scf7180000779501:149549-149792 + T-TAAAATGG-TGA--------AC------TCGAACCAGAATGGCAATTCCAACGGTC---ACGATGATGTAAGTACT--TG-AA--AA-A----CAG------AA--ATA-AG--------AAT--------CC-TAA-TGCGTGCTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--TGGGGGCAGAAAA-AGTGAGGTTAGGTCA------TTAGG--------------TG----A-----------AAAAATCAATAAT---TTA-------------CGAT------------TT-CTCTTAGGATTGTATCACCGAACCGGAGCATATGCGGAAATTGTT
droFic1 scf7180000453581:192539-192790 - G-CAAAATGG-TGA--------AC---AACTCAAACCAGAATGGCAACTCAAACGGCC---ACGATGATGTAAGTAGTCTTG-A------AG---CAA-------A--ACA-AG--------AAA-------GTT-TTA-CGCGAGCGGGTGACTCA-----------------------------------------------CTTCACCGGTCGCCATTTTGAA-A------T--T-ACGCATGTGTCTCA--TAG--GCAGAA-A-AGTGAGGTTAGGTTC-CA-----GGG--------------TG----A--GAA------AAAAATCAATAAT---TGG--TATATG-----CGAT------------TT-CCCCCAGGATTCGATCACCGAGCCGGAGCATATGCGCAAGTTGTT
droKik1 scf7180000302706:1364315-1364543 + ---------------------------------AACCAGAACGGAAACTCCAACGGCC---ACGATGACGTAAGTAG------AAGGAAGTAAAGCGCA---------GTT--GA-------AAA--------TT-GGC------TCTGGTGCCCCG----GG--------------------------------------GTGTCTCACCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CTG--GCCTG--G-AGTGAGGTTAGGTTTTGGTCATT------G----------------A----T------GAAAATCAATATT---TTG-------------GGTC------------TT-CCCGCAGGATTCCATCACCGAGCCGGAGCATATGCGCAAACTGTT
droAna3 scaffold_13340:17231375-17231580 + A------------A--------AC------GACAACCAGAATGGAAGCTCCAACGGCC---ATGATGATGTAAGTAC------AC--AA-TT---CGCA---------AAT--GA-------AAA--------TT-CAG-TGCACGCGGGTGTC----------------------------------------------------TCACCAGTCGCCATTTTGAAAA----------------------------------AGG--A-AATGAGGTTAGGTGC-TCCAGG---G--------------GG----T-----------ACAAATCAATAAT---GTG-------------CGTTTG-T----AT-TTT-TGTGCAGGAA---ATCACTGAGCCGGAGCATATGCGCAAATTGTT
droBip1 scf7180000396424:732489-732696 + A-AAC-------------------------GATAACCAAAATGGAAACTCCAACGGCC---ACGATGATGTAAGTAT------AT--AA-TC---CGG-------G--AAT-GA--------AAA--------TT-CTT-TGCACGCGGGTGTC----------------------------------------------------TCACCGGTCGCCATTTTGAAAA------A--A-------------------------AG--A-AATGAGGTTAGGGGC-TCCTGA---G--------------GG----A-----------AGAAATCAATAAT---TTG-------------CGTTTTTGTTC-----TA-TGTGTAGGAA---ATCACTGAGCCGGAGCATATGCGCAAATTGTT
dp5 2:3614433-3614642 - ---------------------------------AATCAGAACGGGAACTCCAACGGCC---ACGATGATGTAAGTAG------AT--AT-TT--GCAG-------GAGTT---G--------AGATTTT-----T-CAG-TGC------GTGTC----------------------------------------------------TCGGCGGACGCCATTTTGAAAA------T--T-ACGCATGTGCCTCC--AAG--CGAGG--G-AGAGAGGTTATGTCT-GACC-----G--------------TG----A-----------AAAAATCAATAAT---TTG-------------CCTA------------TG-TTCCTAGGAT---ATTACTGAGCCGGAGCATATGCGTAAACTGTT
droPer2 scaffold_7:733674-733883 + ---------------------------------AATCAGAACGGAAACTCCAACGGCC---ACGATGATGTAAGTAG------AT--AT-TT--GCAG-------GAGTT---G--------AGATTTT-----T-CAG-TGC------GTGTC----------------------------------------------------TCGGCGGACGCCATTTTGAAAA------T--T-ACGCATGTGCCTCC--AAG--CGAGG--G-AGAGAGGTTATGTCT-GACC-----G--------------TG----A-----------AAAAATCAATAAT---TTG-------------CCTA------------TG-TTCCTAGGAT---ATTACTGAGCCGGAGCATATGCGTAAACTGTT
droWil2 scf2_1100000004902:9122982-9123254 + GCTAAAATGGGCGGCCACAATGAT---AACTCGAATCAAAACGGCAATTCCAATGGACAGCACGATGATGTAAGTACG--AA-AT--AT-AT----GG------GG--ATC-AAA-------AAA--------CTTGTCTT-----------TTTTT-----------------------------------------------TTTCTTCGGCCGCCATTTTGA--A------T--T-ACGCATGTGCTTCG--AAGGGGTAGA------AGAGGTTATGTCT-GGCT--T-GGGTTG----------------ATAGAA------AAAAATCAATACTCATTGG--ATTATGCATCTAATATTTT----A---TT-TATTTAGGACTCAATTACTGAGCCAGAGCATATGCGTAAACTGTT
droVir3 scaffold_13047:12416866-12417136 - dvi_16640 G--------G-CGGTCA-----TA------AC-GATCAAAATGGAAACTCTAATGGCCAGCATGATGATGTAAGTAGG---A-AT--AT-TA-----T-----AGG--CGC-TA--------AGA--------TT-TTG-TG----------ATTTG----GGT--AGTTGTATGCATGTG---TGGGTACATACGCG----A-ACTTAGTGACCGCCATTTTGAAAT------T--TTCTACATGTGCGTCA--GCGGGGTA---------TAGGTTAGGTTT-GATT--T------GA---------TG----AA-AAA------AAAAATCGATATG---AAA-------------CTTTTG-T---TCTTTTA-TATTTAGGACTCCATTACAGAGCCAGAGCATATGCGTAAATTGTT
droMoj3 scaffold_6540:29400146-29400395 + ----------------------------------ATCAGAATGGAAATTCTAACGGACAGCATGATGATGTAAGTACG--C-----------------AAATG-AT--TTT-AA--AAA---TA----TCTA---------------------------------AATTTGTATGCATGT--AATGGGTACATACATACGCGTGGCTCGTTGACCGCCATTTTGAAAT------T--TTTCGCATGTGCGTCA--GCGGGGTA---------GAGGTTATGTTT-GGCT--T------GA---------TG----A-----------AAAAATCGATATG---AAA-----------CTTGAATTTT----AT-TTT-TATTTAGGACTCTATTTCTGAGCCAGAGCATATGCGCAAATTGTT
droGri2 scaffold_14830:713811-714103 + ----------------------------------ATCAAAATGGCAACTCCAATGGCCAGCACGATGATGTAAGTACG--A----------------A-AA------------GAAAAA---TAA----T--TTC-TTA-TGTGTATACGTGTGTGACTTGTGTGAGCATGTATGCGTGTGCAAAGGGTAGACACGCGTCTG--TGCCTCCGACCGCCATTTTGAAATTGAAAATTTTTCTTAATGTGCGTCAGCCAG--CGAGG--GATTTTAGGTTATGTAT-TGCC--------------------------------------TAAAATGAAAAAT---TGTAAAATATG-----TGAATTTTTTTTATGTTG-CATTTAGGATTCGATTACGGAGCCAGAGCATATGCGGAAATTGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G-TAAAATGG-TAA--------AC------TCGAATCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTATT--GG-TT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCG-TGCAAACGGGTGTCTCG-----------------------------------------------CCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATGTAC-AGTCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAC------------TT-TGCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................AAT---TTA-------------GGAC------------TT-TGCTCAGGACTCC................................2512.00200110000000000000
..................................................................................................................................................................................................................................................................................................................................................AT---TTA-------------GGAC------------TT-TGCTCAGGAC...................................2112.00202000000000000000
..................................ATCAGAACGGCAACTCCAATG................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
..................................ATCAGAACGGCAACTCCAATGGCC---..........................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCCGGAGCATAT............1711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCATCACCGAGCCGGAGC................1811.00100100000000000000
.................................................................................................................................................................................................................................................................G--GCGGA--A-AGTGAGGTTATGTAC-AGT.......................................................................................................................................2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCCATCACCGAGCCGGAGCA...............2011.00100000000001000000
G-TAAAATGG-TAA--------AC------TCGA.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..................................ATCAGAACGGCAACTCCAATGGCC---A.........................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...................................TCAGAACGGCAACTCCAATGG...............................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......TGG-TAA--------AC------TCGAATCAGAACGGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.............A--------AC------TCGAATCAGAACGGCAACTCCAA..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGCCGGAGCATATGCGCAAGC....2611.00100000010000000000
................................................................................................................................................................................................................................AAAA------T--T-ACGCATGTGTCTCA--........................................................................................................................................................................2011.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................A-------------GGAC------------TT-TGCTCAGGACTCC................................2011.00101000000000000000
...............................................................................................................................................AAACGGGTGTCTCG-----------------------------------------------CCTT.......................................................................................................................................................................................................................1811.00100000000001000000
..............................TCGAATCAGAACGGCAACT......................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...................................................................................................................................................................................................................GGTCGCCATTTTGAAAA------T--..........................................................................................................................................................................................1811.00100000100000000000
........GG-TAA--------AC------TCGAATCAGAACGGCAACTC.....................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGGACTCCATCACCGAGCCGGAGC................2511.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCCGGAGCATATG...........1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GGACTCCATCACCGAGCCGGAGC................2311.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GGACTCCATCACCGAGCCGGAGCATATG...........2811.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGAGCATATGCGCAAGCTG..2311.00100000000001000000
droSec2
G-TAAAATGG-TGA--------AC------TCGAACCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTATT--GG-TT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCG-TGCAAACTGGTGTCTCG-----------------------------------------------GCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATGTAC-AGCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAT------------TT-TGCTCAGGACTCCATCACCGAGCCAGAGCATATGCGCAAGCTGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................CAGGACTCCATCACCGAGCCAGAGC................2513.0030120
.................................................CCAATGGCC---ATGATGATG.................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................ACCAGAACGGCAACTCCAA..................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...............................................CTCCAATGGCC---ATGATGATGTAA..............................................................................................................................................................................................................................................................................................................................................................2311.0010001
..........................................................................................................................................................................................................................................................................................AC-AGCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------G...............................................................2811.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................GACTCCATCACCGAGCCAGA..................2011.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCGAGCCAGAGC................2011.0010010
....................................CAGAACGGCAACTCCAATGGCC---ATGAT.....................................................................................................................................................................................................................................................................................................................................................................2711.0011000
...........................................GCAACTCCAATGGCC---ATGATGATGA................................................................................................................................................................................................................................................................................................................................................................2511.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGCATATGCGCAAGCTGTT2311.0010100
.......................................................GCC---ATGATGATGTAAGTA...........................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
G-TAAAATGG-TGA--------ACTCGAACCAGAACCAGAACGGCAACTCCAATGGCC---ATGATGATGTAAGTAGT--GG-AT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCC-TGTAAGCTGGTGTCTCG-----------------------------------------------CCTTGCCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--AGG--GCGGA--A-AGTGAGGTTATG-----GCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------GGAC------------TT-TCCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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................................................................................................................................................................................................................................................................................................................................................................................................GGACTCCATCACCGAGCCGGA..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCACCGAGCCGGAGCATATGCGCA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGAGCATATGCGCA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................ACCAGAACGGCAACTCCAATGGCC---..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATGATGATGTAAGTAGT--G......................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................................GCAACTCCAATGGCC---ATGATGAT..................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCACCGAGCCGGAGCATATGCGCA.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................CTCCAATGGCC---ATGATGATGT................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................TCCATCACCGAGCCGGAGCATATGCGCAA......2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAGAACCAGAACGGCAACTCCAATG................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CTCCAATGGCC---ATGATGATG.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GG-TGA--------ACTCGAACCAGAACCAGA...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATGTGTCTCA--AGG--GCGGA--A-AG........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATATGCGCAAGCT...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGA--------ACTCGAACCAGAACCAGAACGGCA.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GG-TGA--------ACTCGAACCAGAACCAGAA..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTCCATCACCGAGCCGGAG.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CATCACCGAGCCGGAGCATATGCGCA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............GA--------ACTCGAACCAGAACCAGAACG............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCATATGCGCAAGCTG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................CCAGAACCAGAACGGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAATGG-TGA--------ACTCGAACCAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CGAGCCGGAGCATATGCGCAA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAATGG-TGA--------ACTCGAACCAGAACCA.................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GTGTCTCA--AGG--GCGGA--A-AGTGA.....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAACCAGAACCAGAACGG...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCATCACCGAGCCGGAGCATATGCG.........2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCGAGCCGGAGCAT..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATCAATAAT---TTA-------------GGAC------------TT-.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCCTCAGGACTCCATCACCGAG.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGCCGGAGCATATGCGCA.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TCA--AGG--GCGGA--A-AGTGAGG...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
......................ACTCGAACCAGAACCAGAACGGCA.........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................G-----GCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------G...............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCCGGAGCATATGC..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................CCAGAACCAGAACGGCAACTCCAA..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGGACTCCATCACCGAGCCG....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGGCAACTCCAATGGCC---ATGA......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AACCAGAACGGCAACTCCA...................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................GATGATGTAAGTAGT--GG-AT--A...............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCGAGCCGGAGCA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AA------T--T-ACGCATGTGTCTCA--AGG--GCGG...............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............A--------ACTCGAACCAGAACCAGAACGG...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....AATGG-TGA--------ACTCGAACCAGAACCAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGAACCAGAACCAGAACGGCAACTC.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCCGGAGCATATGCGCA.......2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCATCACCGAGCCGGAGC................1811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................G--GCGGA--A-AGTGAGGTTATG-----GCCATT------G----------------A-----------................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCCGGAGCATATGCGCAAGCTG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................AA------T--T-ACGCATGTGTCTCA--AGG--GCG................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTCA--AGG--GCGGA--A-AGTGAGGTT.................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCGCCATTTTGAAAA------T--T-ACG.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTA-------------GGAC------------TT-TCCTCAGG.....................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CTCAGGACTCCATCACCGAGCCGGAGCA...............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GAACGGCAACTCCAATGGC..............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGTAAGTAGT--GG-AT--AT-TA-----A-----GGG--...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGAACCAGAACCAGAACGGCAA........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACCAGAACCAGAACGGCAA........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCACCGAGCCGGAGCATATGCGCG.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droEre2
G-TAAAATGG-TGA--------ATTCGAACCAGAATCAGAACGGCAACTCCAACGGCC---ATGATGATGTAAGTAGT--GC-AT--AT-TA-----A-----GGG--TCT-AG--------AAA--------TT-TCC-TGCAAACTAGAGTCTCG-----------------------------------------------CTTTACCGGTAGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CGG--GCGAA--A-ACTGAGGTTAAGTAC-GGCCATT------G----------------A-----------TAAAATCAATAAT---TTA-------------CGAT------------TT-TCCTTAGGACTCCATCACCGAGCCGGAGCATATGCGCAAACTGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................ACGGCC---ATGATGATGTAAGTAGT--G......................................................................................................................................................................................................................................................................................................................................................2418.0080000008
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCACCGAGCCGGAGCATATGCG.........2312.0020000200
........................................................................................................................................................................................................................................................................................................................................................................................................TCACCGAGCCGGAGCATATGCGCA.......2411.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGCCGGAGCATATGC..........2011.0010001000
....................................CAGAACGGCAACTCCAACGGCC---ATGA......................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........GG-TGA--------ATTCGAACCAGAATCAGAACGGC..........................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCACCGAGCCGGAGCATATGC..........2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGAGCATATGCGCAAACTGTT2511.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCCGGAGCATATGCGCA.......2111.0010000010
.....................................AGAACGGCAACTCCAACGG...............................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................GACTCCATCACCGAGCCGGAGC................2211.0010100000
.........G-TGA--------ATTCGAACCAGAATC..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.......................TTCGAACCAGAATCAGAACGGCAACT......................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
droYak3
A-AAAAATGG-TGA--------AC------TCGAACCAGAACGGCAACTCCAATGGCCATGATGAGGATGTAAGTAGT--GC-AT--AT-AA-----G-----AAG--ACT-AG--------AAA--------TT-TCC-TGCAAACTAGTGGCTCG-----------------------------------------------CCCTACCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CAG--GCGGA--A-AGTGAGGTTAAGAAC-GGCTATT------G----------------A----T------AAAAATCAATAAT---TTA-------------GGAA------------TT-CCCTCAGGACTCCATCACCGAGCCGGAGCATATGCGCAAACTGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...AAAATGG-TGA--------AC------TCGAACCAGAACGGC..........................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGCCGGAGCATATGCGCA.......2311.00100100000000
....................................CAGAACGGCAACTCCAATGGCC.............................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................A------------TT-CCCTCAGGACTCCATCACCGAGC......................2611.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCCATCACCGAGCCGGAGC................1911.00110000000000
droEug1
G-TAAAATGG-TGA--------AT---AACTCGAACCAAAACGGCGACTCCAACGGCC---ACGACGATGTAAGTAC------ATGGAT-TA-----A-----AGG--TTCTAT-----TTTAAG--------TT-TTA-TACGAGCTGGTGTCTCA-----------------------------------------------CCATTCTGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--GGG--GCAGA--A-AATGAGGTTAGGTT------GTT------G-----------G----A-----------GAAAATCAATAAT---TCA-------------TGAT------------TCTTTTCCAGGACTCTATCACTGAGCCGGAGCATATGCGCAAATTGTTSizeHit CountTotal NormTotal
No Reads
droBia1
G-AGAAATGG-TGA--------AC---AACTCGAACCAGAACGGCAACTCCAATGGCC---ACGATGATGTAAGTAGA--G--------------CGGAAATGGGG--TT----------------TTTCTAGTC-TTA-TGCGGGCGGGTGTCTCG-----------------------------------------------CCTCACCGGTCGCCATTTTGAA-A------T--T-ACGCATGTGTCTCG--GGG--GCAGA--A-AGTGAGGTTAGGTCG-CA-----CGG--------------TGTCGGATAG-A------AAAAATCAATAAT---TAA-------------TGAT------------TTTCCCCTAGGACTCCATCACTGAGCCGGAGCATATGCGCAAACTGTTSizeHit CountTotal NormTotal
No Reads
droTak1
G-TAAAATGG-TGA--------AC---AACTCGAACCAGAACGGCAACTCCAATGGCC---ACGATGATGTAAGTAGT--GG-G----C-TA-----A-AAC-GGG--TTT-AA--------TAG--------TT-TTT-TACGCACTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--GGGGGGCTGA--A-AGTGAGGTTAGGTCT-G----TT-GGGTCGCTGGAAGGAGTG----A--AAAAAAATAGAAAATCAATAAT---TTA-------------TTTATTTTCTTCAT-TTT-CCTGTAGGACTCCATCACCGAGCCGGAGCATATGCGCAAATTGTTSizeHit CountTotal NormTotal
No Reads
droEle1
G-TAAAATGG-TGA--------AC---AACTCGAACCAGAATGGAAATTCCAACGGCC---ACGATGATGTAAGTACC--CCCAT--AT-AT----AG-------G--AAT-AGA-------AAA--------AA-CAA-TGCGTGCTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCCCA--TGGGGGCAGAAGA-AGTGAGGTTAGGTCT-GA-----AGG--------------TG----A-----------AAAAATCAATAAC---TTA-------------CGAT------------TT-CGCTTAGGATTCCATCACCGAGCCGGAGCATATGCGGAAATTGTTSizeHit CountTotal NormTotal
No Reads
droRho1
T-TAAAATGG-TGA--------AC------TCGAACCAGAATGGCAATTCCAACGGTC---ACGATGATGTAAGTACT--TG-AA--AA-A----CAG------AA--ATA-AG--------AAT--------CC-TAA-TGCGTGCTGGTGTCTCA-----------------------------------------------CCTCACCGGCCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--TGGGGGCAGAAAA-AGTGAGGTTAGGTCA------TTAGG--------------TG----A-----------AAAAATCAATAAT---TTA-------------CGAT------------TT-CTCTTAGGATTGTATCACCGAACCGGAGCATATGCGGAAATTGTTSizeHit CountTotal NormTotal
No Reads
droFic1
G-CAAAATGG-TGA--------AC---AACTCAAACCAGAATGGCAACTCAAACGGCC---ACGATGATGTAAGTAGTCTTG-A------AG---CAA-------A--ACA-AG--------AAA-------GTT-TTA-CGCGAGCGGGTGACTCA-----------------------------------------------CTTCACCGGTCGCCATTTTGAA-A------T--T-ACGCATGTGTCTCA--TAG--GCAGAA-A-AGTGAGGTTAGGTTC-CA-----GGG--------------TG----A--GAA------AAAAATCAATAAT---TGG--TATATG-----CGAT------------TT-CCCCCAGGATTCGATCACCGAGCCGGAGCATATGCGCAAGTTGTTSizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------AACCAGAACGGAAACTCCAACGGCC---ACGATGACGTAAGTAG------AAGGAAGTAAAGCGCA---------GTT--GA-------AAA--------TT-GGC------TCTGGTGCCCCG----GG--------------------------------------GTGTCTCACCGGTCGCCATTTTGAAAA------T--T-ACGCATGTGTCTCA--CTG--GCCTG--G-AGTGAGGTTAGGTTTTGGTCATT------G----------------A----T------GAAAATCAATATT---TTG-------------GGTC------------TT-CCCGCAGGATTCCATCACCGAGCCGGAGCATATGCGCAAACTGTTSizeHit CountTotal NormTotal
No Reads
droAna3
A------------A--------AC------GACAACCAGAATGGAAGCTCCAACGGCC---ATGATGATGTAAGTAC------AC--AA-TT---CGCA---------AAT--GA-------AAA--------TT-CAG-TGCACGCGGGTGTC----------------------------------------------------TCACCAGTCGCCATTTTGAAAA----------------------------------AGG--A-AATGAGGTTAGGTGC-TCCAGG---G--------------GG----T-----------ACAAATCAATAAT---GTG-------------CGTTTG-T----AT-TTT-TGTGCAGGAA---ATCACTGAGCCGGAGCATATGCGCAAATTGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................CACTGAGCCGGAGCATATGCGCAAATT...2711.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACTGAGCCGGAGCATATGC..........2011.001001000
.....................................AGAATGGAAGCTCCAACGGC..............................................................................................................................................................................................................................................................................................................................................................................2020.501000010
....................................CAGAATGGAAGCTCCAACGGCC---ATGAT.....................................................................................................................................................................................................................................................................................................................................................................2720.501010000
................................CAACCAGAATGGAAGCTCCAACGGC..............................................................................................................................................................................................................................................................................................................................................................................2520.501010000
...................................CCAGAATGGAAGCTCCAACGGCC---AT........................................................................................................................................................................................................................................................................................................................................................................2520.501000001
.................................AACCAGAATGGAAGCTCCAACGGCC---ATG.......................................................................................................................................................................................................................................................................................................................................................................2820.501100000
....................................CAGAATGGAAGCTCCAACGGC..............................................................................................................................................................................................................................................................................................................................................................................2120.501010000
..............................................GCTCCAACGGCC---ATGATGATGA................................................................................................................................................................................................................................................................................................................................................................2220.501010000
........................................ATGGAAGCTCCAACGGCC---ATG.......................................................................................................................................................................................................................................................................................................................................................................2120.501000001
droBip1
A-AAC-------------------------GATAACCAAAATGGAAACTCCAACGGCC---ACGATGATGTAAGTAT------AT--AA-TC---CGG-------G--AAT-GA--------AAA--------TT-CTT-TGCACGCGGGTGTC----------------------------------------------------TCACCGGTCGCCATTTTGAAAA------A--A-------------------------AG--A-AATGAGGTTAGGGGC-TCCTGA---G--------------GG----A-----------AGAAATCAATAAT---TTG-------------CGTTTTTGTTC-----TA-TGTGTAGGAA---ATCACTGAGCCGGAGCATATGCGCAAATTGTTSizeHit CountTotal NormTotal
No Reads
dp5
---------------------------------AATCAGAACGGGAACTCCAACGGCC---ACGATGATGTAAGTAG------AT--AT-TT--GCAG-------GAGTT---G--------AGATTTT-----T-CAG-TGC------GTGTC----------------------------------------------------TCGGCGGACGCCATTTTGAAAA------T--T-ACGCATGTGCCTCC--AAG--CGAGG--G-AGAGAGGTTATGTCT-GACC-----G--------------TG----A-----------AAAAATCAATAAT---TTG-------------CCTA------------TG-TTCCTAGGAT---ATTACTGAGCCGGAGCATATGCGTAAACTGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGAGCCGGAGCATATGCGT........2413.0030300000000
.......................................AACGGGAACTCCAACGGCC---..........................................................................................................................................................................................................................................................................................................................................................................1913.0030200000001
..................................ATCAGAACGGGAACTCCAACGG...............................................................................................................................................................................................................................................................................................................................................................................2212.0020000000002
...................................TCAGAACGGGAACTCCAACGGCC---ACGA......................................................................................................................................................................................................................................................................................................................................................................2712.0020000000200
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGCCGGAGCATATGCGTAAA.....2411.0010100000000
........................................ACGGGAACTCCAACGGCC---ACGATGA...................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TACTGAGCCGGAGCATATGC..........2011.0010000001000
.................................AATCAGAACGGGAACTCCAACGG...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
.....................................AGAACGGGAACTCCAACGGCC---..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGAGCATATGCGTAAACT...2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................GAT---ATTACTGAGCCGGAGCATATGC..........2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................AT---ATTACTGAGCCGGAGCATATGC..........2411.0010010000000
.....................................AGAACGGGAACTCCAACGGCC---ACGAT.....................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
........................................ACGGGAACTCCAACGGCC---ACGAT.....................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
---------------------------------AATCAGAACGGAAACTCCAACGGCC---ACGATGATGTAAGTAG------AT--AT-TT--GCAG-------GAGTT---G--------AGATTTT-----T-CAG-TGC------GTGTC----------------------------------------------------TCGGCGGACGCCATTTTGAAAA------T--T-ACGCATGTGCCTCC--AAG--CGAGG--G-AGAGAGGTTATGTCT-GACC-----G--------------TG----A-----------AAAAATCAATAAT---TTG-------------CCTA------------TG-TTCCTAGGAT---ATTACTGAGCCGGAGCATATGCGTAAACTGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................AT---ATTACTGAGCCGGAGC................1814.004400000
..................................ATCAGAACGGAAACTCCAACGGCC---ACG.......................................................................................................................................................................................................................................................................................................................................................................2714.004400000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGAGCCGGAGCATATGC..........2214.004301000
.......................................AACGGAAACTCCAACGGCC---..........................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..............................................................................................................................................................................................................................................................................................................................................AATAAT---TTG-------------CCTA------------TG-TTCCTAG......................................2211.001010000
.......................................AACGGAAACTCCAACGGCC---ACGA......................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................CAGAACGGAAACTCCAACGGCC---ACGA......................................................................................................................................................................................................................................................................................................................................................................2611.001100000
......................................GAACGGAAACTCCAACGGCC---ACGAT.....................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGCGTAAACTGTT1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................GAT---ATTACTGAGCCGGAGC................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................GAT---ATTACTGAGCCGGAGCATATGC..........2511.001001000
.................................AATCAGAACGGAAACTCCAACGGCC---..........................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................................ACGGAAACTCCAACGGCC---AC........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................CAGAACGGAAACTCCAAC.................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
droWil2
GCTAAAATGGGCGGCCACAATGAT---AACTCGAATCAAAACGGCAATTCCAATGGACAGCACGATGATGTAAGTACG--AA-AT--AT-AT----GG------GG--ATC-AAA-------AAA--------CTTGTCTT-----------TTTTT-----------------------------------------------TTTCTTCGGCCGCCATTTTGA--A------T--T-ACGCATGTGCTTCG--AAGGGGTAGA------AGAGGTTATGTCT-GGCT--T-GGGTTG----------------ATAGAA------AAAAATCAATACTCATTGG--ATTATGCATCTAATATTTT----A---TT-TATTTAGGACTCAATTACTGAGCCAGAGCATATGCGTAAACTGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................AATTCCAATGGACAGCACGATGATGACT..............................................................................................................................................................................................................................................................................................................................................................2812.00220000
................ACAATGAT---AACTCGAATCAAAACGGC..........................................................................................................................................................................................................................................................................................................................................................................................2612.00220000
...........CGGCCACAATGAT---AACTCGAATCAAAAC.............................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCATATGCGTAAACT...1911.00100100
..................................ATCAAAACGGCAATTCCAATGGACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2811.00101000
...........................................................................................................................................................................................................................................................................................T-GGCT--T-GGGTTG----------------ATAGAA------AAAAA...........................................................................................2311.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................CAATTACTGAGCCAGAGCATATG...........2311.00100010
.............................................AATTCCAATGGACAGCACGATGATG.................................................................................................................................................................................................................................................................................................................................................................2511.00100010
........................................................................................................................................................................................................................................................................................GTCT-GGCT--T-GGGTTG----------------ATAGAA------AAA.............................................................................................2411.00101000
............................................CAATTCCAATGGACAGCACGATGATG.................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.................................................CCAATGGACAGCACGATGATGAC...............................................................................................................................................................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAGCATATGCGTAAACT...2211.00100100
.......................................AACGGCAATTCCAATGGACG............................................................................................................................................................................................................................................................................................................................................................................2011.00101000
........................................................................................................................................................................................................................................................................................GTCT-GGCT--T-GGGTTG----------------ATAGA.......................................................................................................2011.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCATATGCGTAAAC....1811.00100010
........................................................................................................................................................................................................................................................................................GTCT-GGCT--T-GGGTTG----------------ATA.........................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGAGCCAGAGCATATGC..........2211.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................TACTGAGCCAGAGCATATGCGTAAACT...2711.00100010
..TAAAATGGGCGGCCACAATG.................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.............................................AATTCCAATGGACAGCACGATGATGTA...............................................................................................................................................................................................................................................................................................................................................................2711.00100100
...................................................................................................................................................................................................................................A------T--T-ACGCATGTGCTTCG--AAGGGGT.................................................................................................................................................................2411.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAGAGCATATGCGT........1911.00100010
..........................................................................................................................................................................................................................................................................................................................................AATCAATACTCATTGG--ATTATGC....................................................................2311.00100010
.............................................AATTCCAATGGACAGCACGATGA...................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
G--------G-CGGTCA-----TA------AC-GATCAAAATGGAAACTCTAATGGCCAGCATGATGATGTAAGTAGG---A-AT--AT-TA-----T-----AGG--CGC-TA--------AGA--------TT-TTG-TG----------ATTTG----GGT--AGTTGTATGCATGTG---TGGGTACATACGCG----A-ACTTAGTGACCGCCATTTTGAAAT------T--TTCTACATGTGCGTCA--GCGGGGTA---------TAGGTTAGGTTT-GATT--T------GA---------TG----AA-AAA------AAAAATCGATATG---AAA-------------CTTTTG-T---TCTTTTA-TATTTAGGACTCCATTACAGAGCCAGAGCATATGCGTAAATTGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................ATCAAAATGGAAACTCTAATGGCC.............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAGCCAGAGCATATGCGT........2411.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAGCATATGCGTAAATTGTT2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATGCATGTG---TGGGTACATAC....................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............CA-----TA------AC-GATCAAAATGGAAACTCT....................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTACAGAGCCAGAGCATATGC..........2111.001000000000000000000000000000001000000000000000000000000000000000
.................................GATCAAAATGGAAACTCTAAT.................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGCATATGCGTAAAT....2011.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTCCATTACAGAGCCAGAGCATATGC..........2711.001000000000000000000100000000000000000000000000000000000000000000
..............................AC-GATCAAAATGGAAACTCT....................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................TCTAATGGCCAGCATGATGA...................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................A-----TA------AC-GATCAAAATGGAAACT......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGCATATGCGTAAATT...2111.001000000000000000000000000000000000000100000000000000000000000000
...................................................AATGGCCAGCATGATGATGAC...............................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................G----GGT--AGTTGTATGCATGTG---T..............................................................................................................................................................................................................................................2020.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
----------------------------------ATCAGAATGGAAATTCTAACGGACAGCATGATGATGTAAGTACG--C-----------------AAATG-AT--TTT-AA--AAA---TA----TCTA---------------------------------AATTTGTATGCATGT--AATGGGTACATACATACGCGTGGCTCGTTGACCGCCATTTTGAAAT------T--TTTCGCATGTGCGTCA--GCGGGGTA---------GAGGTTATGTTT-GGCT--T------GA---------TG----A-----------AAAAATCGATATG---AAA-----------CTTGAATTTT----AT-TTT-TATTTAGGACTCTATTTCTGAGCCAGAGCATATGCGCAAATTGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................ATG---AAA-----------CTTGAATTTT----AT-TTT-T............................................2211.001000010
.................................................CTAACGGACAGCATGATGATG.................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................TT-GGCT--T------GA---------TG----A-----------AAAAATCG........................................................................................2011.001000010
..........................................GGAAATTCTAACGGACAGCATGAT.....................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................CTAACGGACAGCATGATGA...................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................CTAACGGACAGCATGATGATGACT..............................................................................................................................................................................................................................................................................................................................................................2411.001000001
.............................................AATTCTAACGGACAGCATGATGATG.................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................CTAACGGACAGCATGATGATGA................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................................................ATTTTGAAAT------T--TTTCGCATGTGCGTC...........................................................................................................................................................................2611.001000010
droGri2
----------------------------------ATCAAAATGGCAACTCCAATGGCCAGCACGATGATGTAAGTACG--A----------------A-AA------------GAAAAA---TAA----T--TTC-TTA-TGTGTATACGTGTGTGACTTGTGTGAGCATGTATGCGTGTGCAAAGGGTAGACACGCGTCTG--TGCCTCCGACCGCCATTTTGAAATTGAAAATTTTTCTTAATGTGCGTCAGCCAG--CGAGG--GATTTTAGGTTATGTAT-TGCC--------------------------------------TAAAATGAAAAAT---TGTAAAATATG-----TGAATTTTTTTTATGTTG-CATTTAGGATTCGATTACGGAGCCAGAGCATATGCGGAAATTGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:41 AM