ID:

dsi_29683

 Coordinate:

3l:19816820-19817066 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.5 -35.5 -35.5

Flybase annnotation

exon [3l_19817067_19817736_-]; CDS [3l_19817067_19817699_-]; exon [3l_19815944_19816819_-]; CDS [3l_19815944_19816819_-]; intron [3l_19816820_19817066_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCCGACAAAGTGGTGAGTAGAATTCGTTTGTTTTACGTTCGGCTTTCAGATCACTCTTCTATCAGTAAACCAGCTTCTGGGGAAGCACACACACACCTATTAAAACCCCGCAGGCTCTATCGCATTTATCGCATACTAACAAAACATCCCTTCCAATAAACCCATCAAAGCATAGACTAAGTCTAGCCTCTCTATGTCGAATCAATCCCAAACCAAACACTTTCCGATTCCGATTCAATCTATGTACGGTGCGCTGTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTCGATTTACCT
**************************************************((((...(((.(((..(((...)))..)))..)))...))))....(((.((((..((((((((.(((((.......................))))).))))).....((.......)).....................................((((((((((....)))....))))))).(((((((((..(((........)))..))))..)))))...........)))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................................TACGTTCGGCCGTCAGATGACT.............................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................TACGGTGCGCTGTAGCAGATTAAGCAA...................................... 27 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTAGAATTCGTTTGTTT.................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................TCTATGTACGGTGCGCTGTAGCAG............................................... 24 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................GTACGGTGCGCTGTAGTAA............................................... 19 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AGCAGAGTAATCAGGAAA.................................. 18 2 9 0.11 1 0 0 0 0 0 1
............................................................................................................................................AAACGCCGCAGGCTCG............................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................AAACCGCGCAGGCTAT............................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTGTCGTCGTCCGCGTTGTCGTTGTCGATTTGGACCACCGGCTGTTTCACCACTCATCTTAAGCAAACAAAATGCAAGCCGAAAGTCTAGTGAGAAGATAGTCATTTGGTCGAAGACCCCTTCGTGTGTGTGTGGATAATTTTGGGGCGTCCGAGATAGCGTAAATAGCGTATGATTGTTTTGTAGGGAAGGTTATTTGGGTAGTTTCGTATCTGATTCAGATCGGAGAGATACAGCTTAGTTAGGGTTTGGTTTGTGAAAGGCTAAGGCTAAGTTAGATACATGCCACGCGACATCGTCTAATTCGTCCTTTTCGTTAATTTTCGGATGTTGCTGAGCTAAATGGA
**************************************************((((...(((.(((..(((...)))..)))..)))...))))....(((.((((..((((((((.(((((.......................))))).))))).....((.......)).....................................((((((((((....)))....))))))).(((((((((..(((........)))..))))..)))))...........)))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
.............................................................................................................................................................................................................................................................................................CCACGCGAGATCGACTAATT.......................................... 20 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................ACCACGGGCTGTTTCA.......................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................TTCGGCGTCCGAGATAGC........................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................GCGTCCGAGATAGGGTA........................................................................................................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTTGTGAGAGGCTGCGGCTAA.......................................................................... 21 3 14 0.79 11 0 0 0 11 0 0 0 0
.....................................................................................................................................................................................................................................................................TGCCAAGGCTAAGTTAGA.................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0
..GTCGTCGTCCGCGTTGTCGTT.................................................................................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................AGCATAGTTAGGGTTAGGTTAGT.......................................................................................... 23 3 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................TTAGTTTGGGTTAGGTTTGT.......................................................................................... 20 2 7 0.14 1 0 0 0 1 0 0 0 0
...............................................................................................GGAATGTCATTTGGTCGAA......................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................GGTTTGGTTTGGGAA....................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................GGGCGAAGACCCCTT................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATTTTCGGCTGCTGCTGA.......... 18 2 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................................CCTTCGTGTGTTTGTG..................................................................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................GTCTAGTGGGAAGATG....................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................GTCGGAAGTCGCTGAGCTA...... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................AGCTTAGTCAGGGTCTGCT.............................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19816770-19817116 - dsi_29683 AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTTCT--ATCAGT--------AAACCAGCTTCTGGGGAAGCAC--------A---------C--------ACACACCTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAA--AACAT-----------------------CC-------------------------------CTTC--------CAATAAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droSec2 scaffold_11:137225-137572 - AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGATTTAC------------------GATCGGCTTTCAGA------------------TCACTCTTCT--ATCAGT--------AAACCAGCTTCTGGGGAAGCAC--------A---------C----------ACACTTATTAAAACC-C--CGCAAGCTG---GGATCGCATTTATCGCATA--------CTAACAA--GACAT-----------------------CC-------------------------------CTTA--------CAATAAA-C--CCATCAAAGCATAG-ACTAAA------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACCACAAACTCT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGTT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGGCTC--------------------------------------GATTTACCT
dm3 chr3L:20232664-20233012 - AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTTCT--ATTAT-GGTTT---ACGCCAGCTTCTGGGGAAGCAC--------A---------C----------ACACTTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTTC--------CAATAAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droEre2 scaffold_4784:19957014-19957353 - AACAGCAGCAGGCGCAACAGCAACAGCTCAATCTGGTGGCT--------GATAAAGTGGT--GAGTAGGAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTGCT--ATCAGT--------AAACTAGCTTCTGGGGAAGCAC--------A---------C----------ATACTTATTAAAAACCC--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTCC--------CAATCAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CC------GATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droYak3 3L:20339447-20339792 + AACAGCAGCAGGCGCAACAGCAACAGCTCAATCTGGTGGCT--------GAAAAAGTGGT--GAGTAGGAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTACT--ATCAGT--------AAAACAGCTTCTGGGGAAGCGC--------A---------C----------ATACTTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTCC--------CAATCAA-C--CCATCAAAGCATAG-ACTAAG------CC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCAAAACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACCC--------------------------------------GATTTACCT
droEug1 scf7180000409711:5723512-5723872 + AACAGCAACAGGCGCAGCAGCAACAACTCAACTTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTCC------------------GTTTGGCTTGCAGA------------------TCACTTTACT--CTCAGA--------AAACTAGCTTCTGGGGAAGCACACCCAC--C---CACACAC----------ATACACATTAAAACCCC-CTGC----AGGTTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CCCC--CT----CAATCAA-C--CCATTAAAGCTTAG-ACTTAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droBia1 scf7180000302193:3012366-3012720 - AACAGCAGCAGGCGCAGCAGCAACAGCTCAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTTC------------------GTTCGGCTTGCAGA------------------TCACTGTACT--CTCAGT--------AAACCCGCTTCTGGGGAAGCACAC--AAACA---------C----------ACGCTCATTAAAACCCC--CGC----AGGTTCTATCGCATTTCTCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CCCC--------TAATCAA-A--ACATTAAAGCTTAG-ACTAAG-----GTC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TCTCTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGGAAATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droTak1 scf7180000415868:195595-195955 - AGCAGCAGCAGGCGCAGCAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAC--------T-C----TTTTGTTTTAC------------------G---------------------------------------CT--CTCAGT--------AGACCAGCTTCTGGGGAAGCCCAC--AAACA---------T--------ACACACCCATTAAAACCCC--CGC----AGGCTCTGTCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC--CCCGC------------------------CCC-CCATCAACCAATCAA-CCTCCATTAAAGCCTAG-ACTAAGACTTAGTC------------------------------------------------------------------------------------------------------------------------------------------------TAGCCACTCTCTCT--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droEle1 scf7180000491193:4558551-4558922 - AACAGCAGCAGGCACAGCAGCAACAGCTCAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGGCT--------T-C----TTTTGTTTTCC------------------GTTCGGCTTGCAGATG----------------TCACTCCACT--CTCAGT--------AAACCAGCTTCTGGGGAAGCACCC--ACACC---------C--------ACCCACTCATTAAAACCAC--CGC----AGGTTCTGTCGCATTTATCGCATA--------CTAACAT--AAACT-----------------------CC---AGAC------------------------CCC-CCCGCAAAAAAACAA-C--CCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC---CTCTCT--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droRho1 scf7180000777860:23323-23675 - AACAGCAGCAGGCACAACAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGCT--------T-C----TTTTGTTTTCC------------------GTTTCGCTTGCAGATC----------------TCACTCCACT--CTCAGT--------AAACCAGCTTCTGGGGAAGCTCCC--ACACC---------C----------ACACTCATTAAAACCTC--CGC----GCGTTCTATCGCATTTACCGCTAA--------CTAACAT--ATACT-----------------------CC--------------------------------CCC--------AAATCAA-C--CCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTTTGTC-GATTCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGATTC--------------------------------------GATTTACCT
droFic1 scf7180000454113:2071669-2072055 + AACAGCAGCAGGCACAACAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTTT--------TTTCCTTTT-GTTCGGCTTGCAGA------------------TCACTCCACTCCCTCAAT--------AAAATGGCTTCTGGGGAAGCACA---AAACA-----TACACATACACACACCCACTCATTAAAACCCC--TGC----AGGGTCTATCGCATTTATCGCATA--------CTAACATTTAACCA-----------------------CC---CAAT------------------------TCC-CCC-----GAATCAAAA--TCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TTCCTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------CGTTTACCT
droKik1 scf7180000302441:2979732-2980087 - AGCAGCAGCAGGCACAGCAGCAGCAGCTTAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAGTTAAAGTAGCCGTAGCCTAGTCTTCC------------------GTTCGACTCT----------------------------TCCC--TTCAATGAATC-----AGCAGCTTCTGGGGAAGCAC--------C---------T----------ACACCCATTA-----------------GTTTCTATCGCATCTATCGCATA--------CTAACAT--CTCCCCCGA---------AAAT------CA-------------------------------ACCC--------AAATCAAAC--CCATTTAAACTTAGGACTATGT-----CT------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TCTCTC-TTGTC-GAACCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCCATGTATGGTGGCGCTGTGTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCT
droAna3 scaffold_13337:10613297-10613618 - AGCAGCAGCAGCAGCAACAGCAGCAGCAGTAACAGCGC-------GTGCGATAAAAGCTT--TTGCAAACT--------G-C----TACTATTTTGA------------------ATCCGATTCGCATTTCAAATTTTGTTGTTAATTAAGTCGACA--GAC---------------------------AGGCAG--------AAAAAAAAAAC--------A-AGAAACAGTGACGTG-C--AAC----ATGGACTACTGA--------------------GTGATAT--ATGCA-----------------------AT---AAGT------------------AA----CTTG--------CAATTGA-A--ACGAAAGAGCCGA--GCTAAT------TGTGATCTCAGCAATGAGAATGGACTATCAAATGCCGCCGCCAGCATT-----GGCGCTACAACAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACGGCCTGCAACA---------------------------------------------TCAACA
droBip1 scf7180000396709:97085-97324 - CTT--------------------------------------------------------------------------------------------------------------------------------------------------------CC--ACCAA-AGTTT---GAACCTAATTCTGGGGAGGCTA--------T---------------------CTCTCATTTAAACCCCAACGC----TGTGTCTATCGCATTTATCGCATA--------CTAACCC--CACCTCCG-------------------------AGAA------------------------CAC---------CCAGAAA-A--CCATTTAAGCTTAA-ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAAAA-AACCA-AAACAATTCTT--------------------------------------------CCGATTTCGATT---TCGATTGGCG--G-CGGT--TTAGCTGATTAAGCAGGAAAAGCATATTAAAGCCTACAACGATTC--------------------------------------AATTCATCT
dp5 XR_group6:12555730-12556087 - AGCAGCAGCAGCCACAGCAGCATCAGCAGCAGTC-------------------CAGCTAC--GAGCAGCCG------CCT-C----CCTCGCTGTACAGTT--------------CTTCCGCCTCCAGT------------------TCAGCCTACG--GACAGA--------CGAGAGGCTTTGGAGGCTATACG---GGACC---------C----------ACGCCCCATTACGCG-C--CGC----CAGGACGGTCGACCACACCAGCAC--------CCAATCG--AACAG-----------------------TT-------------------------------CTGC--------CACCCAA-C--TATCTAGAGCC------AATC------CG---------------------------------------------TGGCTACACAGAGCAGCATCAGCATCAGCACCAGCACCA----------------------ACAG----------------------------------TTGCC--------G--CTGTCTGC--------------------------CA--CA--------------------------------------------CCGAAGCTGGAGGAATCGATGCCCGTAG-AGCC--GGAG--GTGGAGGCAGGATCGCCAGCACAAAGG-CTCACCACCTC--------------------------------------GCCGCCCCT
droPer2 scaffold_33:576135-576481 - ATCAGCAGCAGTCCAGCTACGAGCAGCCGCC------------------------------------------------T-C----CCTCGCTGTACAGTT--------------CTTCCGCCTCCAGT------------------TCAGCCTACG--GACAGA--------CGAGAGGCTTTGGAGGCTATACG---GGAGA---------C----------ACACCCCATTACGCGTT--CGC----CAGGACGGTCGACCACATCAGCAC--------CCAATCG--AACAG-----------------------TT-------------------------------CTCC--------CA------C--CCAACTATGTAGAG-ACAATC------GG---------------------------------------------TGGCTACACAGAGCAGCATCAGCACCAGCACCAGCACCAGCAACA----------------ACAGTTGCCGCTGTCTGCCACACCGA-------------------------------------------------------------------------------------------------------------------AGCTGGGAGGAATCGATGCCCCGTG-GGAG--CTGGAGGTGGAGGCAGGCTGACCAGCACAAAGGCT-CACCACCTC--------------------------------------GCCGCCCCT
droWil2 scf2_1100000004511:6249846-6250172 + AACAGCAACAGCCTCAACAG--------------------------------------GT--AAGCAAGCA--------T-C----ATTCTCTTCTG--TTCTCAATTACAATTCAATTTAATTGAATT------------------TCATTTTTGT--TCCAGC--------AGACAATTCCCCAG-----CAG--------A---------T----------ACAACAACAACAAACAC--AAC----AAGTTTTGGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGCCACAACAACAGCAACAGCAGCAGCAACAACCACAACAAACACAAGTCATG----------------------------------------------------------------------------------------------CAACAACCGCAGGGCAAGAAATTTTTAATTAG------------TCAACAGCAATTCAATCAGCTTAGTGCG---CA--ACAGCAGCAACA------------------------GATTTTGGCACAGAATCAACAAAATCAAAATGTATTTATTGTAAATCAAACAAACA
droVir3 scaffold_12726:1116665-1116947 - dvi_1895 AGCAGCAGCAGCAGCAACAGCAGCCGGCTAATTCGGAATCTGCAGGTGCGCTTAACAATGTTGGGCAGTCA--------G-T----TGTTGATTCAG-------------------------TCACAGA------------------TT---CAGTC--ATCACC--------AACTCCACTATCACCA---------------------------------------CAACCAC--------AA-----------------------------CCACTTCC-----------------AATACCAACAACATCACCAC------------------AAACACCTCCACATC---------------------------------CAAC-ACTAGC------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCACCAATTTAGGCTCAAACAGCAGCCATA--TAGTGCAACATAATATTGCCACAGTC-AGCA--GCACCAGCAGCAGCAGCAACAGCAACAACA-------------------------------------------------------ACAATCT
droMoj3 scaffold_6473:9048005-9048306 + AGCAGCAGCAGCAGCAAGT---------GAACTCGGAATCTGCAGGTGCGCTTAACACTGTTGGGCAGTCA--------G-T----TGTTGATTCAG-------------------------TCACAGA------------------TT---CAGTC--ATCAGC--------AACTCCACTGTTACCA---------------------------------------CAACCACAAACAT--AA-----------------------------CCACTTCC-----------------AATACCAACAACAT------CTCCACCACCAACACCATCAACACCTCCATATC------------------------CACCACCA-----------------------------------------------------------------------------------------CCAC-------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACACCACCAATTTAGGCTCAAGCAATAGCCATC--TAGTGCAACATAATATTGCCGCAGTC-AACA--ACAGCAG-------------------CAGCAGCCTAAACAACAAC--------------------------------------AATATTAAT
droGri2 scaffold_15106:4698-5058 - AGCAGCAGCAGCTGCAACAGCAACAAATGCAGCTGCAA-TT--------GCAGCAAC------------AG------CAG-C----AGTCGCAGAGC----------------------------------------------------AACAT------------GTTGTCGCGTGAGGATATGGAGGATATTGA---TGCAT---------T----------TCT------------------------CAATCTATCGCCCCTGCAA----CCGCTTGC-----------------AA--GCAACAATAATAACAA------------------CAACAATACCACGGG---------------------------------C--------------------------------------------------------------------AATAGCAGCAGCAACCACAACAACAACAACA-------------------------ACAACATCTCGAATGCGCCACAAAATACAAATGAGGATTCGCT---GTT--G--TCCTACATGCAAATGACCACCG-AGTC--GAGTCCT--T-----------------------------------------------------CGCTCAACTTCCACATGGGC-ATCA--GTGACGACGGCAGCGAGACGCACAGCGAGGACAACAAAATGATGCAC-------------------------------------TCATCCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTTCT--ATCAGT--------AAACCAGCTTCTGGGGAAGCAC--------A---------C--------ACACACCTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAA--AACAT-----------------------CC-------------------------------CTTC--------CAATAAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGCT--GTAGCAGATTAAGCAA............................................................................2711.00100000000000010000
..........................................................GT--GAGTAGAAT--------T-C----GTTTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGTACGGTG-CGCT--GTAGCAG.....................................................................................2411.00100000010000000000
droSec2
AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGATTTAC------------------GATCGGCTTTCAGA------------------TCACTCTTCT--ATCAGT--------AAACCAGCTTCTGGGGAAGCAC--------A---------C----------ACACTTATTAAAACC-C--CGCAAGCTG---GGATCGCATTTATCGCATA--------CTAACAA--GACAT-----------------------CC-------------------------------CTTA--------CAATAAA-C--CCATCAAAGCATAG-ACTAAA------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACCACAAACTCT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGTT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGGCTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGTT--GTAGCAG.....................................................................................1811.0010010
...............AACAGCAACAGCTAAACCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
AACAGCAGCAGGCGCAACAGCAACAGCTAAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTTCT--ATTAT-GGTTT---ACGCCAGCTTCTGGGGAAGCAC--------A---------C----------ACACTTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTTC--------CAATAAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...AGCAGCAGGCGCAACAGCAACAGCTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGCAACAGCTAAACCTGGTGGCC--------GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGGTGGCC--------GACAAAGTGCA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AACAGCTAAACCTGGTGGCC--------GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGCT--GTAGCAGATTAA................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGCT--GTAGCAG.....................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000
..CAGCAGCAGGCGCAACAGCAACAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AACAGCAGCAGGCGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCAGGAAAAGCAATTAAAAGCC..........................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................ACAGCAACAGCTAAACCTGGTGGCC--------GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTATGTACGGTG-CGCT--GTAG........................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGAAAAGCAATTAAAAGC...........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGCT--GTAGCAGATTAAG...............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-.........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCAGGAAAAGCAATTAAAAGCC..........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCTAAACCTGGTGGCC--------GACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGATTAAGCAGGAAAAGCAAT..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............AACAGCAACAGCTAAACCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................GT--GAGTAGAAT--------T-C----GTTTGTTTTAC------------------GTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AACAGCAGCAGGCGCAACAGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGGTG-CGCT--GTAGCAG.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTG-CGCT--GTAGCAGATTAAGCAG............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTACGGTG-CGCT--GTAGCAG.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGAAAAGCAATTAAAAGCCT.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTAGCAGATTAAGCAGGAAAA.......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCAGGAAAAGCAATTAAAAGCC..........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCAGCAGGCGCAACAGCAACAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG-CGCT--GTAGCAGATTAAGCAGG...........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGTG-CGCT--GTAGCG......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...AGCAGCAGGCGCAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACAGCTAAACCTGGTGGCC--------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTT....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCAGGAAAAGCAAC..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCCTACAACGACTC--------------------------------------GATTTACC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-CGCT--GTAGCAGATTAAGCAGGAAAA.......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTCGGCTTTCAGA------------------TCACTCTTCT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGTACGGTG-CGCT--GTAGCAG.....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTACGGTG-CGCT--GTAG........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGACTC--------------------------------------GATTTACC.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................AGCTAAACCTGGTGGCC--------GACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT--GTAGCAGATTAAGCAGG...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TT---ACGCCAGCTTCTGGGGAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................G-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCT...............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGGTGGCC--------GACAAAGTGCA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCAGCAGGCGCAACAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGCAGCAGGCGCAACAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....CAGCAGGCGCAACAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACAGCAGCAGGCGCAACAGCAACAGCTCAATCTGGTGGCT--------GATAAAGTGGT--GAGTAGGAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTGCT--ATCAGT--------AAACTAGCTTCTGGGGAAGCAC--------A---------C----------ATACTTATTAAAAACCC--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTCC--------CAATCAA-C--CCATCAAAGCATAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCA-AACC--AAACACT--TT--------------------------------------------CC------GATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................AACAGCTCAATCTGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..............................ATCTGGTGGCT--------GATAAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................................................................................................CTAACAT--AACAT-----------------------CC-------------------------------CTCC--------C..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
AACAGCAGCAGGCGCAACAGCAACAGCTCAATCTGGTGGCT--------GAAAAAGTGGT--GAGTAGGAT--------T-C----GTTTGTTTTAC------------------GTTCGGCTTTCAGA------------------TCACTCTACT--ATCAGT--------AAAACAGCTTCTGGGGAAGCGC--------A---------C----------ATACTTATTAAAACC-C--CGC----AGGCTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CTCC--------CAATCAA-C--CCATCAAAGCATAG-ACTAAG------CC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAATCCCAAAACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACCC--------------------------------------GATTTACCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................CTGGTGGCT--------GAAAAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00410002100000
...............................TCTGGTGGCT--------GAAAAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200100010000
..............................ATCTGGTGGCT--------GAAAAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
...............AACAGCAACAGCTCAATCTGGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
AACAGCAACAGGCGCAGCAGCAACAACTCAACTTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTCC------------------GTTTGGCTTGCAGA------------------TCACTTTACT--CTCAGA--------AAACTAGCTTCTGGGGAAGCACACCCAC--C---CACACAC----------ATACACATTAAAACCCC-CTGC----AGGTTCTATCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CCCC--CT----CAATCAA-C--CCATTAAAGCTTAG-ACTTAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droBia1
AACAGCAGCAGGCGCAGCAGCAACAGCTCAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTTC------------------GTTCGGCTTGCAGA------------------TCACTGTACT--CTCAGT--------AAACCCGCTTCTGGGGAAGCACAC--AAACA---------C----------ACGCTCATTAAAACCCC--CGC----AGGTTCTATCGCATTTCTCGCATA--------CTAACAT--AACAT-----------------------CC-------------------------------CCCC--------TAATCAA-A--ACATTAAAGCTTAG-ACTAAG-----GTC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TCTCTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGGAAATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCAGCAGCAGGCGCAGCAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAC--------T-C----TTTTGTTTTAC------------------G---------------------------------------CT--CTCAGT--------AGACCAGCTTCTGGGGAAGCCCAC--AAACA---------T--------ACACACCCATTAAAACCCC--CGC----AGGCTCTGTCGCATTTATCGCATA--------CTAACAT--AACAT-----------------------CC--CCCGC------------------------CCC-CCATCAACCAATCAA-CCTCCATTAAAGCCTAG-ACTAAGACTTAGTC------------------------------------------------------------------------------------------------------------------------------------------------TAGCCACTCTCTCT--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droEle1
AACAGCAGCAGGCACAGCAGCAACAGCTCAACCTGGTGGCC--------GACAAAGTGGT--GAGTAGGCT--------T-C----TTTTGTTTTCC------------------GTTCGGCTTGCAGATG----------------TCACTCCACT--CTCAGT--------AAACCAGCTTCTGGGGAAGCACCC--ACACC---------C--------ACCCACTCATTAAAACCAC--CGC----AGGTTCTGTCGCATTTATCGCATA--------CTAACAT--AAACT-----------------------CC---AGAC------------------------CCC-CCCGCAAAAAAACAA-C--CCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC---CTCTCT--CTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droRho1
AACAGCAGCAGGCACAACAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGCT--------T-C----TTTTGTTTTCC------------------GTTTCGCTTGCAGATC----------------TCACTCCACT--CTCAGT--------AAACCAGCTTCTGGGGAAGCTCCC--ACACC---------C----------ACACTCATTAAAACCTC--CGC----GCGTTCTATCGCATTTACCGCTAA--------CTAACAT--ATACT-----------------------CC--------------------------------CCC--------AAATCAA-C--CCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------T--CTCTTTGTC-GATTCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGATTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droFic1
AACAGCAGCAGGCACAACAGCAACAGCTCAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGGAT--------T-C----TTTTGTTTTTT--------TTTCCTTTT-GTTCGGCTTGCAGA------------------TCACTCCACTCCCTCAAT--------AAAATGGCTTCTGGGGAAGCACA---AAACA-----TACACATACACACACCCACTCATTAAAACCCC--TGC----AGGGTCTATCGCATTTATCGCATA--------CTAACATTTAACCA-----------------------CC---CAAT------------------------TCC-CCC-----GAATCAAAA--TCATTAAAGCTTAG-ACTAAG------TC------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TTCCTCTATGTC-GAATCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCTATGTACGGTG-CGCT--GTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------CGTTTACCTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCAGCAGCAGGCACAGCAGCAGCAGCTTAATCTGGTGGCC--------GACAAAGTGGT--GAGTAGAAGTTAAAGTAGCCGTAGCCTAGTCTTCC------------------GTTCGACTCT----------------------------TCCC--TTCAATGAATC-----AGCAGCTTCTGGGGAAGCAC--------C---------T----------ACACCCATTA-----------------GTTTCTATCGCATCTATCGCATA--------CTAACAT--CTCCCCCGA---------AAAT------CA-------------------------------ACCC--------AAATCAAAC--CCATTTAAACTTAGGACTATGT-----CT------------------------------------------------------------------------------------------------------------------------------------------------TAGCC--------TCTCTC-TTGTC-GAACCAAACCCA-AACC--AAACACT--TT--------------------------------------------CCGATTCCGATTCAATCCATGTATGGTGGCGCTGTGTAGCAGATTAAGCAGGAAAAGCAATTAAAAGCCTACAACGACTC--------------------------------------GATTTACCTSizeHit CountTotal NormTotal
No Reads
droAna3
AGCAGCAGCAGCAGCAACAGCAGCAGCAGTAACAGCGC-------GTGCGATAAAAGCTT--TTGCAAACT--------G-C----TACTATTTTGA------------------ATCCGATTCGCATTTCAAATTTTGTTGTTAATTAAGTCGACA--GAC---------------------------AGGCAG--------AAAAAAAAAAC--------A-AGAAACAGTGACGTG-C--AAC----ATGGACTACTGA--------------------GTGATAT--ATGCA-----------------------AT---AAGT------------------AA----CTTG--------CAATTGA-A--ACGAAAGAGCCGA--GCTAAT------TGTGATCTCAGCAATGAGAATGGACTATCAAATGCCGCCGCCAGCATT-----GGCGCTACAACAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACGGCCTGCAACA---------------------------------------------TCAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................AAC--------A-AGAAACAGTGACGTG-C--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
......AGCAGCAGCAACAGCAGCAGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.331000010
..............CAACAGCAGCAGCAGTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................20200.255050000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..................................................................25200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..................................................................22200.102000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................................................................22200.102020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC................................................................26120.081010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAA.................................................................................................................................................................................................................................................................................................20200.051000001
......AGCAGCAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
..CAGCAGCAGCAGCAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
...........................................................................................................................................................................................................AAAAAAAAAAC--------A-AGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................................................................25200.051010000
droBip1
CTT--------------------------------------------------------------------------------------------------------------------------------------------------------CC--ACCAA-AGTTT---GAACCTAATTCTGGGGAGGCTA--------T---------------------CTCTCATTTAAACCCCAACGC----TGTGTCTATCGCATTTATCGCATA--------CTAACCC--CACCTCCG-------------------------AGAA------------------------CAC---------CCAGAAA-A--CCATTTAAGCTTAA-ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAAAA-AACCA-AAACAATTCTT--------------------------------------------CCGATTTCGATT---TCGATTGGCG--G-CGGT--TTAGCTGATTAAGCAGGAAAAGCATATTAAAGCCTACAACGATTC--------------------------------------AATTCATCTSizeHit CountTotal NormTotal
No Reads
dp5
AGCAGCAGCAGCCACAGCAGCATCAGCAGCAGTC-------------------CAGCTAC--GAGCAGCCG------CCT-C----CCTCGCTGTACAGTT--------------CTTCCGCCTCCAGT------------------TCAGCCTACG--GACAGA--------CGAGAGGCTTTGGAGGCTATACG---GGACC---------C----------ACGCCCCATTACGCG-C--CGC----CAGGACGGTCGACCACACCAGCAC--------CCAATCG--AACAG-----------------------TT-------------------------------CTGC--------CACCCAA-C--TATCTAGAGCC------AATC------CG---------------------------------------------TGGCTACACAGAGCAGCATCAGCATCAGCACCAGCACCA----------------------ACAG----------------------------------TTGCC--------G--CTGTCTGC--------------------------CA--CA--------------------------------------------CCGAAGCTGGAGGAATCGATGCCCGTAG-AGCC--GGAG--GTGGAGGCAGGATCGCCAGCACAAAGG-CTCACCACCTC--------------------------------------GCCGCCCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................TTGGAGGCTATACG---GGACC---------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC--------G--CTGTCTGC--------------------------CA--CA--------------------------------------------CC.............................................................................................................................1811.0010100000000
droPer2
ATCAGCAGCAGTCCAGCTACGAGCAGCCGCC------------------------------------------------T-C----CCTCGCTGTACAGTT--------------CTTCCGCCTCCAGT------------------TCAGCCTACG--GACAGA--------CGAGAGGCTTTGGAGGCTATACG---GGAGA---------C----------ACACCCCATTACGCGTT--CGC----CAGGACGGTCGACCACATCAGCAC--------CCAATCG--AACAG-----------------------TT-------------------------------CTCC--------CA------C--CCAACTATGTAGAG-ACAATC------GG---------------------------------------------TGGCTACACAGAGCAGCATCAGCACCAGCACCAGCACCAGCAACA----------------ACAGTTGCCGCTGTCTGCCACACCGA-------------------------------------------------------------------------------------------------------------------AGCTGGGAGGAATCGATGCCCCGTG-GGAG--CTGGAGGTGGAGGCAGGCTGACCAGCACAAAGGCT-CACCACCTC--------------------------------------GCCGCCCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................GA--------CGAGAGGCTTTGGAGGCTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
droWil2
AACAGCAACAGCCTCAACAG--------------------------------------GT--AAGCAAGCA--------T-C----ATTCTCTTCTG--TTCTCAATTACAATTCAATTTAATTGAATT------------------TCATTTTTGT--TCCAGC--------AGACAATTCCCCAG-----CAG--------A---------T----------ACAACAACAACAAACAC--AAC----AAGTTTTGGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGCCACAACAACAGCAACAGCAGCAGCAACAACCACAACAAACACAAGTCATG----------------------------------------------------------------------------------------------CAACAACCGCAGGGCAAGAAATTTTTAATTAG------------TCAACAGCAATTCAATCAGCTTAGTGCG---CA--ACAGCAGCAACA------------------------GATTTTGGCACAGAATCAACAAAATCAAAATGTATTTATTGTAAATCAAACAAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCACAACAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTAGTGCG---CA--ACAGC.......................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTAG------------TCAACAGCAATTCAATCAGCT..........................................................................................................2811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATG----------------------------------------------------------------------------------------------CAACAACCGCAGGGC............................................................................................................................................................1911.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAACAACCACA.........................................................................................................................................................................................................................................................................................2620.50100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACCACAACAA.....................................................................................................................................................................................................................................................................................2060.17100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACCACAACA......................................................................................................................................................................................................................................................................................1970.14100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................19200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................23200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................................22200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
AGCAGCAGCAGCAGCAACAGCAGCCGGCTAATTCGGAATCTGCAGGTGCGCTTAACAATGTTGGGCAGTCA--------G-T----TGTTGATTCAG-------------------------TCACAGA------------------TT---CAGTC--ATCACC--------AACTCCACTATCACCA---------------------------------------CAACCAC--------AA-----------------------------CCACTTCC-----------------AATACCAACAACATCACCAC------------------AAACACCTCCACATC---------------------------------CAAC-ACTAGC------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCACCAATTTAGGCTCAAACAGCAGCCATA--TAGTGCAACATAATATTGCCACAGTC-AGCA--GCACCAGCAGCAGCAGCAACAGCAACAACA-------------------------------------------------------ACAATCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................ACAGCAGCCGGCTAATTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
.............GCAACAGCAGCCGGCTAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
................................TCGGAATCTGCAGGTGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACATCACCAC------------------AAACACCTCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................CAGCCGGCTAATTCGGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................GA------------------TT---CAGTC--ATCACC--------AACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TTCC-----------------AATACCAACAACATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
.......................................................CAATGTTGGGCAGTCA--------G-T----T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000100000000000000000000000000000000000000000000000000
.......................................CTGCAGGTGCGCTTAACAATGTTGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
...............AACAGCAGCCGGCTAATTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................ACCAC--------AA-----------------------------CCACTTCC-----------------AATACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................TGTTGGGCAGTCA--------G-T----TGTTGATTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATAATATTGCCACAGTC-AGC...............................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................AACCAC--------AA-----------------------------CCACTTCC-----------------AATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATA--TAGTGCAACATAATA..............................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AAACACCTCCACATC---------------------------------CAAC-ACT..............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.........................GGCTAATTCGGAATCTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................GATTCAG-------------------------TCACAGA------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000100000
....GCAGCAGCAGCAACAGCAGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000000000000000000000000000000000000001000
.......GCAGCAGCAACAGCAGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--GCACCAGCAGCAGCAGC...........................................................................20200.102000200000000000000000000000000000000000000000000000000000000000
...AGCAGCAGCAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAACA.................................................................20200.102000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAAC..................................................................20200.102000200000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAGCAGCAGCAGCAAC........................................................................20160.061000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAAC..................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAACA.................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGCAGCAGCAGCAGCAAGT---------GAACTCGGAATCTGCAGGTGCGCTTAACACTGTTGGGCAGTCA--------G-T----TGTTGATTCAG-------------------------TCACAGA------------------TT---CAGTC--ATCAGC--------AACTCCACTGTTACCA---------------------------------------CAACCACAAACAT--AA-----------------------------CCACTTCC-----------------AATACCAACAACAT------CTCCACCACCAACACCATCAACACCTCCATATC------------------------CACCACCA-----------------------------------------------------------------------------------------CCAC-------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACACCACCAATTTAGGCTCAAGCAATAGCCATC--TAGTGCAACATAATATTGCCGCAGTC-AACA--ACAGCAG-------------------CAGCAGCCTAAACAACAAC--------------------------------------AATATTAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........AGCAGCAAGT---------GAACTCGGAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
..........GCAGCAAGT---------GAACTCGGAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................................................................CACAGA------------------TT---CAGTC--ATCAGC--------AACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAGCAG-------------------CAGCAGCCTAAACA....................................................2211.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTC-AACA--ACAGCAG-------------------CAGCAGCCT.........................................................2611.001100000
......AGCAGCAGCAAGT---------GAACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACACCACC........................................................................................................................................................18120.081000010
droGri2
AGCAGCAGCAGCTGCAACAGCAACAAATGCAGCTGCAA-TT--------GCAGCAAC------------AG------CAG-C----AGTCGCAGAGC----------------------------------------------------AACAT------------GTTGTCGCGTGAGGATATGGAGGATATTGA---TGCAT---------T----------TCT------------------------CAATCTATCGCCCCTGCAA----CCGCTTGC-----------------AA--GCAACAATAATAACAA------------------CAACAATACCACGGG---------------------------------C--------------------------------------------------------------------AATAGCAGCAGCAACCACAACAACAACAACA-------------------------ACAACATCTCGAATGCGCCACAAAATACAAATGAGGATTCGCT---GTT--G--TCCTACATGCAAATGACCACCG-AGTC--GAGTCCT--T-----------------------------------------------------CGCTCAACTTCCACATGGGC-ATCA--GTGACGACGGCAGCGAGACGCACAGCGAGGACAACAAAATGATGCAC-------------------------------------TCATCCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................AGCAAC------------AG------CAG-C----AGTCGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.10110

Generated: 05/18/2015 at 09:35 PM