ID:

dsi_29676

 Coordinate:

3r:4626946-4627002 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.7 -6.4 -6.4 -6.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_29676  3r:4626968-4626982 +
  2. node_31353:248-262 +
  3. node_92568:192-206 -
  4. node_45359:25-39 +
star

Sense Strand Reads

CATGGAAGGAAGAAGATTCACTCAGCACATCAGCGGGCGGCAATGAAAGCGTGTGTATATTACATTTTACATTTATTGGAGCTCCTTAAGAAACTCCATTTTCACAGGACGAGCTGGTTGGTTCCATGACCTTTCGTATACCCTATCGCGTGGTGGA
**************************************************..............((..........(((((............))))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
........................................................................TTATTGGAGCTCCTT...................................................................... 15 0 4 1.25 5 5 0 0
..............................................................................................................AGGCTGGTTGGTTCCCTGAC........................... 20 3 5 0.20 1 0 1 0
.........................................................................TATTGTAGCTCCTGAAGA.................................................................. 18 2 7 0.14 1 0 0 1
..................................................................TCACATTTATTGGGGCTC......................................................................... 18 2 10 0.10 1 1 0 0
.......................................................................TTTATTGGAGCTCCTC...................................................................... 16 1 14 0.07 1 1 0 0

Anti-sense strand reads

GTACCTTCCTTCTTCTAAGTGAGTCGTGTAGTCGCCCGCCGTTACTTTCGCACACATATAATGTAAAATGTAAATAACCTCGAGGAATTCTTTGAGGTAAAAGTGTCCTGCTCGACCAACCAAGGTACTGGAAAGCATATGGGATAGCGCACCACCT
**************************************************..............((..........(((((............))))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................AAGGTGCTGGAAAGC..................... 15 1 9 0.22 2 0 2 0
........................................................................................TCTTTGAGGTAAAAGGGTATTGC.............................................. 23 3 5 0.20 1 1 0 0
........................................................................................TCTTTGAGGTAAAGGGGTC.................................................. 19 2 5 0.20 1 1 0 0
...................................................................................................AAAGTGTTGTGCTCGAC......................................... 17 2 19 0.11 2 0 0 2

Generated: 04/24/2015 at 10:12 AM