ID:dsi_29673 |
Coordinate:2r:5144615-5144764 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -35.7 | -35.7 | -35.7 |
 |
 |
 |
CDS [2r_5144765_5144930_-]; exon [2r_5144765_5144957_-]; intron [2r_5144016_5144764_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCCATACCCCTTCGTGGGTAACCTGTTCCAGTTCGGTCTCAAGCCAGCCGGTGAGTACTGGCCAACTAGCCTGCCTATATTTATGAACTCTTCAACGTTTAATGCCAAAGTCGTGGCTCTGACCGAATCCGCAAGCACCTGGGAACTTGCAGCGATTCAATGCGTTCATTTCCCGGTGGTATCGAGTTGCACATTTGGATTTCATCTCGGATTGTGCTGATTTCCTCGACTTATTTATTGTAATATTTGC **************************************************(((((((..(((..........)))..)))))))((((........))))....(((((((.(((((((.((.((....))....((((.(((((..((.((((........)))))).)))))))))...))))))))))).)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ........CGTTCGTGGGGAACCTG................................................................................................................................................................................................................................. | 17 | 2 | 6 | 3.67 | 22 | 14 | 8 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................GAACTTGCAGCGATTCAA.......................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................................GTTCATTTCTCGGTGGAATC................................................................... | 20 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................GTTCATTTCCCGGTA........................................................................ | 15 | 1 | 20 | 0.45 | 9 | 1 | 1 | 0 | 4 | 3 | 0 |
| ........CGTTCGTGGGGAACC................................................................................................................................................................................................................................... | 15 | 2 | 20 | 0.35 | 7 | 7 | 0 | 0 | 0 | 0 | 0 |
| ........................................AAGCCAGCCGGTGAGGGCCG.............................................................................................................................................................................................. | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................................................................AACTTGCAGCGATTC............................................................................................ | 15 | 0 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........CGTTCGTGGGGAACCT.................................................................................................................................................................................................................................. | 16 | 2 | 20 | 0.15 | 3 | 2 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................................................GTATCGAGTTGGACA......................................................... | 15 | 1 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................GTTCATTTCTCGGTGGA...................................................................... | 17 | 2 | 20 | 0.10 | 2 | 1 | 0 | 0 | 1 | 0 | 0 |
| ............................CAGTTCGGTCCCTAGCC............................................................................................................................................................................................................. | 17 | 2 | 10 | 0.10 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................CGCTTCAACATTTAATGC................................................................................................................................................. | 18 | 2 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................................TGCCTATAGTTAAGAA................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................................................................GACTAGCACATTTGGA................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
CGGTATGGGGAAGCACCCATTGGACAAGGTCAAGCCAGAGTTCGGTCGGCCACTCATGACCGGTTGATCGGACGGATATAAATACTTGAGAAGTTGCAAATTACGGTTTCAGCACCGAGACTGGCTTAGGCGTTCGTGGACCCTTGAACGTCGCTAAGTTACGCAAGTAAAGGGCCACCATAGCTCAACGTGTAAACCTAAAGTAGAGCCTAACACGACTAAAGGAGCTGAATAAATAACATTATAAACG
**************************************************(((((((..(((..........)))..)))))))((((........))))....(((((((.(((((((.((.((....))....((((.(((((..((.((((........)))))).)))))))))...))))))))))).)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|
| ...............................AGGCCAGAGTTCGGT............................................................................................................................................................................................................ | 15 | 1 | 3 | 1.00 | 3 | 2 | 1 | 0 | 0 |
| ..................................CCAGAGTTCGGTTGGTCAC..................................................................................................................................................................................................... | 19 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............................AGGCCAGAGTTCGGTTGGTCA...................................................................................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............................AGGCCAGAGTTCGGTTGG......................................................................................................................................................................................................... | 18 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............................AGGCCAGAGTTCGGTTG.......................................................................................................................................................................................................... | 17 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 |
| ..................................CCAGAGTTCGGTTGG......................................................................................................................................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 |
| ...................................CAGGGTTCGGTCGGC........................................................................................................................................................................................................ | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 |
| ...............................................................................AAATACTTGAGAGGTT........................................................................................................................................................... | 16 | 1 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 |
| ...................................CAGAGTTCGGTTGGTCA...................................................................................................................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 |
| ..................................CCAGAGTTCGGTTGGTCAT..................................................................................................................................................................................................... | 19 | 3 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................TCACGACTAAAGGAGGTAA................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
| ...............................AGGCCAGAGTTCGGTT........................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
Generated: 04/23/2015 at 10:19 AM