ID:

dsi_29666

 Coordinate:

3l:11536387-11536546 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.4 -25.3 -25.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCATCGATGCACAGAAAGCAGCCGCAGCCAATACTATCAATCATATTTACTGCCAAAACATAACATTGAGCCTGAATTGACAGCTGTGCTGGGGCTACCCATTAATTACCGGTCACCAAATTGCGCTGCCTCGTAGTTTATACAGTATTTAATTATTTTATTGATCTTGTTAATCTTGCCTTAATCTACTACCGCTTGAGGTGCCGCTAGATGCGTTCAAGGTGCTGCTGTCCACACTGGGCGAGGATTCCATCATCGAT
**************************************************.............(((..(((.((......)))))))).((((....))))........(((.((((((((((((......))))))))...(((((...........)))))..........((..((..((......))..))..)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................................TACTACCGCTTGAGGTGCCGCTAGAA................................................ 26 1 1 1.00 1 1 0 0 0 0 0
............................................................TAACATTGAGCCTGAATTGAC................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................GGTAGATCCGGTCAAGGTGC................................... 20 3 2 1.00 2 0 2 0 0 0 0
.................................................................................................................................................................................................................................TGCTGTCCACACTGGGCGAGG.............. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................CAGCTGTGCTGCGGCT.................................................................................................................................................................... 16 1 6 0.83 5 0 0 0 4 0 1
.................................................................................................................................................................................................................GATGCGTTCAAGGTGCTGC................................ 19 0 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................................AGATGCGTTCAAGGT..................................... 15 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GCGTTCAAGGTGCTGCTG.............................. 18 0 2 0.50 1 0 0 0 0 1 0
.................................................................................AGCTGTGCTGCGGCT.................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 1 0 0
................................................................................CAGCTGTGCTGCGGC..................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CGTAGCTACGTGTCTTTCGTCGGCGTCGGTTATGATAGTTAGTATAAATGACGGTTTTGTATTGTAACTCGGACTTAACTGTCGACACGACCCCGATGGGTAATTAATGGCCAGTGGTTTAACGCGACGGAGCATCAAATATGTCATAAATTAATAAAATAACTAGAACAATTAGAACGGAATTAGATGATGGCGAACTCCACGGCGATCTACGCAAGTTCCACGACGACAGGTGTGACCCGCTCCTAAGGTAGTAGCTA
**************************************************.............(((..(((.((......)))))))).((((....))))........(((.((((((((((((......))))))))...(((((...........)))))..........((..((..((......))..))..)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................TAAAATAACTAGAACAATT....................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............................TTATGATAGTTAGTATAAATG.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
....................................AGTTAGTATAAATGACGGTTTTGT........................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0
.......................CGTCGGTTATGATAGTTAGTA........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
............................................................................................................................CGACGGAGCTTCAAATTTGGC................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0
...................................................................................................................................................................................................................ACGCAAGTTCCACGACGACAG............................ 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................CGGCGATCTACGCAAGTTCCA..................................... 21 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................................................ATCTACGCTAGTTCC...................................... 15 1 8 0.13 1 0 1 0 0 0
......................................................TTTTGGAAGGTAACTCGGA........................................................................................................................................................................................... 19 3 16 0.13 2 0 0 0 2 0
............................................................................................................................................................................................................................CCACGACGGCTGGTGTGA...................... 18 2 10 0.10 1 0 0 1 0 0
..........................................................................................................................................................................................................CGGCGTTACACGCAAGTTC....................................... 19 3 17 0.06 1 1 0 0 0 0
.................................................................................................................................................................................................................................ACGGCAGGCGTGACCC................... 16 2 20 0.05 1 0 0 0 1 0
..........................................................................................................................................................AAAAATAACTAGAATAATT....................................................................................... 19 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:30 AM