ID:

dsi_2964

 Coordinate:

3l:8214490-8214556 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_8214167_8214489_+]; CDS [3l_8214167_8214489_+]; CDS [3l_8214557_8214690_+]; exon [3l_8214557_8214690_+]; intron [3l_8214490_8214556_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------##################################################
CCGGCAAGGTCAAGGATAAGGATCGCAGTGTGCTCAAGGAGAGATTTTCTGTAGGTTTTTATTTTTAAAATAAGCTAAACTTTCTTGATTTAAAAAAACATCCTCTATAATTTTCAGAACTTCAATAAGGACTTTGAGGAGGCATGCAAAATCCAGCGGGGCATCTC
**************************************************..(((......((((((((.((((.........)))).)))))))).....))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR902009
testis
 M024
male body
........................................................................................................................TTCAATAAGGACTTTGAGGAGGCATGC.................... 27 0 1 7.00 7 0 5 1 0 1 0 0 0 0 0
........................................................................................................................TTCAATAAGGACTTTGAGGAGGCA....................... 24 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0
......................TCGCAGTGTGCTCAAGGAGAGATT......................................................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
...............................................................................................................TTTTCTAACTTCAATAAGGACTTTGA.............................. 26 3 1 3.00 3 0 0 0 0 1 2 0 0 0 0
.......................CGCAGTGTGCTCAAGGAGAGATTT........................................................................................................................ 24 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0
.........TCAAGGATAAGGATCGCAGTGTGCTCA................................................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
....................................................................................................................TAACTTCAATAAGGACTTTGAGGAGGCA....................... 28 1 1 2.00 2 0 0 0 1 0 0 0 1 0 0
...............................................................................................................................AGGACTTTGAGGAGGCATGCAAAATC.............. 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
......................TCGCAGTGTGCTCAAGGA............................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........AAGGATAAGGATCGCAGTGTGCTCAA.................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................TCGCAGTGTGCTCAAGGAGAGATTTTC...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AGTGTGCTCAAGGAGAGA........................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGAGGAGGCATGCAAAATCCAGCGGG....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAATAAGGACTTTGAGGAGGCAT...................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................TTTCTAACTTCAATAAGGACTTTGA.............................. 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................AATAAGGACTTTGAGGAGGC........................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................TCGCAGTGTGCTCAAGGAGAGATTT........................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................GTGCTCAAGGAGAGATTT........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGGACTTTGAGGAAGCATGCAAAA................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................TAAGGATCGCAGTGTGCTCAAGGAGAGA........................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................ACTTCAATAAGGACTTTGAGGAGGCA....................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................ATAAGGACTTTGAGGAGGCATGCAAA................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
......................TCGCAGTGTGCTCAAGGAGAGA........................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TCAATAAGGACTTTGAGGAGGCATG..................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TCAATAAGGACTTTGAGGAAGCATGCAAA................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................TAAGGATCGCAGTGTGCTCAAGGA............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................TCGCAGTGTGCTCAAGGAGAGATTTTCT..................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACTTCAATAAGGACTTTGAGGAGGCA....................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................TCGCAGTGTGCTCAAGGAGA............................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................TCTGAAGGTTTTTATTTT...................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................CCGCAGTGTGCTCAAGGA............................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATAAGGACTTTGAGGAGAC........................ 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........AAGGATAAGGATCGCAGTGTGCTCAAGG................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................TAGGATAAACTTTTTTGATTTAA.......................................................................... 23 3 5 0.60 3 0 0 0 0 0 3 0 0 0 0
..............................TGCTCAAGGAGAGATTTTCTAAC.................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................TTTTCTGTAGGTTTTTTTGTTAAAA.................................................................................................. 25 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..GGCAAGGCCGAGGATAAGGA................................................................................................................................................. 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...........................................................................TCAACCTTCTGGATTTAAAAAAA..................................................................... 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..................................GAAGGAGAGATTTTCT..................................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.......................................................................AAGCTTAACTTTCTTGA............................................................................... 17 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0
..............................................................................CCTCTCTTGATTTAAAAAA...................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
...............................................TCTGGAGGTTTTTTTTTTAAAA.................................................................................................. 22 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
................................................................................TATCTTGATTTAAAAAA...................................................................... 17 1 12 0.17 2 0 0 2 0 0 0 0 0 0 0
.......................................AGCGATTGTCTGGAGGTTTT............................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0
....................................................................AATAAGGTAAACTTCCCTGA............................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0
............................................TTTTCTGTAGGTTTT............................................................................................................ 15 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.............................................................................AACTTTCTTCGGTTAAAAAAA..................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................CGGACTGTGAGGAGGC........................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGCCGTTCCAGTTCCTATTCCTAGCGTCACACGAGTTCCTCTCTAAAAGACATCCAAAAATAAAAATTTTATTCGATTTGAAAGAACTAAATTTTTTTGTAGGAGATATTAAAAGTCTTGAAGTTATTCCTGAAACTCCTCCGTACGTTTTAGGTCGCCCCGTAGAG
**************************************************..(((......((((((((.((((.........)))).)))))))).....))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
........................................................................................AAATTTTTTTGCTGGAGATCT.......................................................... 21 3 4 0.25 1 1 0 0
..................................................................................................................GGCTTGAAGTCATTCCCGA.................................. 19 3 9 0.11 1 0 1 0
............................................................................................TTTTTTGAAGGAGATAAT......................................................... 18 2 15 0.07 1 0 0 1

Generated: 04/24/2015 at 10:45 AM