ID:

dsi_29628

 Coordinate:

3r:8651492-8651641 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -5.9 -5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCGTGTTTTTTTCACTCTGCACAAATACATTTCGTGGAAGGAGCTCGGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGCTGTCGTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTCTCCCCAGAGGAGCAGCTCCTCTGTCCGCCTGCGAGGCTGTGGACGTGGATGAGCATG
*******************************************************************************************...((((..((((..((((......))))...........)))).....))))........************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAGCA.. 26 0 1 53.00 53 53 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAGCAA. 27 1 1 13.00 13 13 0 0 0 0
...........................................................................................TCCAGAGGCTGTCGTGCTCGCCGCAGAG................................................................................................................................... 28 0 1 8.00 8 8 0 0 0 0
.................................................................................................................................................................................................................................GAGGCTGTGGACGTGGATGAGCAT. 24 0 1 8.00 8 8 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAGC... 25 0 1 7.00 7 7 0 0 0 0
.................................................................................................................................................................................................................................GAGGCTGTGGACGTGGATGAGCATG 25 0 1 7.00 7 7 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCC............................................................................................................................................................ 24 0 1 5.00 5 5 0 0 0 0
.....................................................................................................................................................................................................................................CTGTGGACGTGGATGAGCATG 21 0 1 4.00 4 4 0 0 0 0
...........................................................................................TCCAGAGGCTGTCGTGCTCGCCGCAGA.................................................................................................................................... 27 0 1 4.00 4 4 0 0 0 0
....................................................................................................................................................................................................................................GCTGTGGACGTGGATGAGCAT. 21 0 1 3.00 3 3 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTCA.................................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0
.................................................................................................................................................................................................................TCCTCTGTCCGCCTGCGAGGCTGTG................ 25 0 1 3.00 3 3 0 0 0 0
...............................................................................................................................TTAAGACACAAAATTCTTTATATGC.................................................................................................. 25 0 1 3.00 3 3 0 0 0 0
.........TTTTCACTCTGCACAAATACATTT......................................................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
...........................................................................................TCCAGAGGCTGTCGTGCTCGCCGCAGAA................................................................................................................................... 28 1 1 3.00 3 3 0 0 0 0
..........................TACATTTCGTGGAAGGAGCTCGGAC....................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
.................................................................................................................................................................................................................................GAGGCTGTGGACGTGGATGAGCAA. 24 1 1 3.00 3 3 0 0 0 0
.................................................................................................................................................................................................................TCCTCTGTCCGCCTGCGAGGCTGT................. 24 0 1 3.00 3 3 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTCACGTC................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAGCAT. 27 0 1 2.00 2 2 0 0 0 0
...........................................................................TAGCATATTCAAAGCCTCCAGAGGCTGT................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCCA........................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
.........................................................................................................TGCTCGCCGCAGAGTCAAAAGATTAAG...................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
..........................................................................................................................................................................................................................CGCCTGCGAGGCTGTGGACGTGGATG...... 26 0 1 2.00 2 2 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCCAGAGG....................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................................................................................CCGCCTGCGAGGCTGTGGACGTGG......... 24 0 1 2.00 2 2 0 0 0 0
...............................................................................................GAGGCTGTCGTGCTCGCCGCAGAGTC................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAGAA.. 26 1 1 2.00 2 2 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTCACGT................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...............................................GGACTCACGTCTCGGGCATAAATAGCAA............................................................................................................................................................................... 28 1 1 2.00 2 2 0 0 0 0
........................AATACATTTCGTGGAAGGAGCTCGGAC....................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
...............................................................................................GAGGCTGTCGTGCTCGCCGCAGAGTCAA............................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
.................................................................................................................................................................AATAACATTAAATTAAGCAACTTT................................................................. 24 0 1 2.00 2 2 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCCAGA......................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
.....................ACAAATACATTTCGTGGAAGGAGCTC........................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTCAC................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0
.................................CGTGGAAGGAGCTCGGACTCACGAA................................................................................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0
..........................TACATTTCGTGGAAGGAGCTCGGACT...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
............TCACTCTGCACAAATACATTTCGT...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................AGAGGCTGTCGTGCTCGCCGCAGA.................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTC..................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................CCTGCGAGGCTGTGGACGTGGATGAGCC.. 28 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................CGCCTGCGAGGCTGTGGACGTGGATAA..... 27 1 1 1.00 1 1 0 0 0 0
..............................................CGGACTCACGTCTCGGGCATAAATA................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................TCTGTCCGCCTGCGAGGCTGTGGA.............. 24 0 1 1.00 1 1 0 0 0 0
.................................CGTGGAAGGAGCTCGGACTCACGT................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................GCGAGGCTGTGGACGTGGATGAGCAT. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................AGCGCAAATAACATTAAATTAAGCAAC.................................................................... 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................AAGCAACTTTTTGTGCTCTCCCCAGA................................................. 26 0 1 1.00 1 1 0 0 0 0
................TCTGCACAAATACATTTCGTGGAAGGA............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................AGGCTGTGGACGTGGATGAGC... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................TAAAGCGCAAATAACATTAAATTA.......................................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................TCTGTCCGCCTGCGAGGCTGTGGAA............. 25 1 1 1.00 1 1 0 0 0 0
...........................................................CGGGCATAAATAGCACTAGCATATTC..................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.TCGAGTTTTTTTCACTCTGCACAAAA............................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0
.TCGTGTTTTTTTCACTCTGCACAAAA............................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCCT........................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
TTCGTGTTTTTTTCACTCTGCACAA................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGA..... 23 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................AAGCAACTTTTTGTGCTCTC....................................................... 20 0 1 1.00 1 1 0 0 0 0
..............................TTTCGTGGAAGGAGCTCGGACTCACGTC................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................TCCAGAGGCTGTCGTGCTCGCCGC....................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..........................TACATTTCGTGGAAGGAGCTCGGACTCA.................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................CGCCTGCGAGGCTGTGGACGTGG......... 23 0 1 1.00 1 1 0 0 0 0
...............................................................................................GAGGCTGTCGTGCTCGCCGCAGAGTCA................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................GCAGCTCCTCTGTCCGCCTGCGAGGCTG.................. 28 0 1 1.00 1 1 0 0 0 0
..................TGCACAAATACATTTCGTGGAAGGAGCT............................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
.............CACTCTGCACAAATACATTTCG....................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................CGAGGCTGTGGACGTGGATGAGCATG 26 0 1 1.00 1 1 0 0 0 0
..........................TACATTTCGTGGAAGGAGCTCGGACTCAA................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
...................................................TCACGTCTCGGGCATAAATAGCAA............................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................TTAAGACACAAAATTCTTTATATG................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................CGGACTCACGTCTCGGGCATAAAT.................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..................................GTGGAAGGAGCTCGGACTCACGTCAA.............................................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0
...............................TTCGTGGAAGGAGCTCGGACTCACGAA................................................................................................................................................................................................ 27 2 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................CGAGGCTGTGGACGTGGATGAGCAT. 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................GAGGCTGTCGTGCTCGCCGCAGAGTCAAA.............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
..................................................CTCACGTCTCGGGCATAAATAGCAC............................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................GACTCACGTCTCGGGCATAAATAG.................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
..........................................................TCGGGCATAAATAGCACTAGCATATTC..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................CGTGGAAGGAGCTCGGACTCACGTC................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGTGGACGTGGATGAG.... 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................GAGGCTGTCGTGCTCGCCGCAGAGTCAT............................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
...........................................................CGGGCATAAATAGCACTAGCATATTCA.................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................GATTAAGACACAAAATTCTTTATA..................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..........................................................TCGGGCATAAATAGCACTAGCATATTCA.................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................CGCCTGCGAGGCTGTGGACGTGGATGAGCA.. 30 0 1 1.00 1 1 0 0 0 0
...................................TGGAAGGAGCTCGGACTCACGTCA............................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................TCCTCTGTCCGCCTGCGAGGCTG.................. 23 0 1 1.00 1 1 0 0 0 0
........................................GGAGCTCGGACTCACGTCTCGGTA.......................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.................................................ACTCACGTCTCGGGCATAAATAGCAC............................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...................................................TCACGTCTCGGGCATAAATAGCACA.............................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
................................TCGTGGAAGGAGCTCGGACTCACGTC................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.........TTTTCACTTCGCACAAATACATTT......................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................GAGGCTGTGGACGTGGATGAGCA.. 23 0 1 1.00 1 1 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCCAG.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................TAAGACACAAAATTCTTTA....................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................................TGCGAGGCTGCGGACGTGGATGAGCA.. 26 1 1 1.00 1 1 0 0 0 0
......................................................................AGCACTAGCATATTCAAAGCCTCTGC.......................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0
................................................................................................................................................................AAATAACATTAAATTAAGCAACTTTA................................................................ 26 1 1 1.00 1 1 0 0 0 0
.............................................TCGGACTCACGTCTCGGGCATAA...................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................TCACGTCTCGGGCATAAATAAA................................................................................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................CTTGTACTCTCCCCACAGGA.............................................. 20 3 7 0.14 1 0 0 1 0 0
.................................................................................................................................................................................................................................GATGCTGTGGACGTG.......... 15 1 11 0.09 1 0 0 0 1 0
.................................CGTAGAAGGAGCTAGG......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AAGCACAAAAAAAGTGAGACGTGTTTATGTAAAGCACCTTCCTCGAGCCTGAGTGCAGAGCCCGTATTTATCGTGATCGTATAAGTTTCGGAGGTCTCCGACAGCACGAGCGGCGTCTCAGTTTTCTAATTCTGTGTTTTAAGAAATATACGATTTCGCGTTTATTGTAATTTAATTCGTTGAAAAACACGAGAGGGGTCTCCTCGTCGAGGAGACAGGCGGACGCTCCGACACCTGCACCTACTCGTAC
**************************************************************************************************...((((..((((..((((......))))...........)))).....))))........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..............................................................................................................CGGCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 27 0 1 50.00 50 50 0 0 0 0 0
.........................................................................................GGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 24 0 1 44.00 44 44 0 0 0 0 0
........................................................................................CGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 25 0 1 40.00 40 40 0 0 0 0 0
......................................................GCAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 26 0 1 28.00 28 28 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTCCGA................... 24 0 1 17.00 17 17 0 0 0 0 0
.............................................................................................................GCGGCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 28 0 1 16.00 16 16 0 0 0 0 0
.............................................................................................................................................................................................................GTCGAGGAGACAGGCGGACGCTCCG.................... 25 0 1 15.00 15 15 0 0 0 0 0
.................................................................................................................CGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 24 0 1 15.00 15 15 0 0 0 0 0
.......................................................................................ACGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 26 1 1 13.00 13 13 0 0 0 0 0
.....................................................................................TTTCGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 28 0 1 10.00 10 10 0 0 0 0 0
..........................................................................................................................................................................................................CTCGTCGAGGAGACAGGCGGACGCT....................... 25 0 1 10.00 10 10 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTCCGACAC................ 27 0 1 9.00 9 9 0 0 0 0 0
......................................................................................TTCGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 27 0 1 9.00 9 9 0 0 0 0 0
..............................................................................................................................................................................................................ACGAGGAGACAGGCGGACGCTCCGA................... 25 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................................................................................................................................GTCGAGGAGACAGGCGGACGCTCCGA................... 26 0 1 8.00 8 8 0 0 0 0 0
..........................................................................................................................................................................................................AACGTCGAGGAGACAGGCGGACGCT....................... 25 2 1 8.00 8 8 0 0 0 0 0
..........................................................................................GAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 23 0 1 7.00 7 7 0 0 0 0 0
.....................................................TGCAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 27 0 1 5.00 5 5 0 0 0 0 0
.......................................................................................AAGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 26 2 1 5.00 5 5 0 0 0 0 0
......................................................................................TTCGGAGGTCTCCGACAGCACGAGC........................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0
............................................................................................................................................................................................................CGTCGAGGAGACAGGCGGACGCT....................... 23 0 1 5.00 5 5 0 0 0 0 0
...............................................................................................CTCCGACAGCACGAGCGGCGTCTCAGT................................................................................................................................ 27 0 1 5.00 5 5 0 0 0 0 0
.....................................................................................TTTCGGAGGTCTCCGACAGCACGAGC........................................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0
......................................................................................AACGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 27 2 1 4.00 4 4 0 0 0 0 0
.........................................................................................................ACGAGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0
..............................................................................................................................................................................................................TCGAGGAGACAGGCGGACGCTCCGA................... 25 0 1 4.00 4 4 0 0 0 0 0
..................................................................................................................................................................TATTGTAATTTAATTCGTTGAAA................................................................. 23 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................GTCTCCGACAGCACGAGCGGCGTCT.................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................................................................................................................CCTCGTCGAGGAGACAGGCGGACGCT....................... 26 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................CTCCGACAGCACGAGCGGCGTCTCAGTT............................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................................GAGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
................................................................................................................................................................................................................GAGGAGACAGGCGGACGCT....................... 19 0 1 3.00 3 3 0 0 0 0 0
....................................................GTGCAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0
........................................................................................AGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 25 1 1 3.00 3 3 0 0 0 0 0
................................................................................................................................................................................................................GAGGAGACAGGCGGACGCTCCGACAC................ 26 0 1 3.00 3 3 0 0 0 0 0
................................................................................................................GCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
.......................................................................CGTGATCGTATAAGTTTCGGAGGTCT......................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................AAGAGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................AGCACGAGCGGCGTCTCAGTTTTCTAAT........................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................CGTCGAGGAGACAGGCGGACGCTCCGA................... 27 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................................................TCGTCGAGGAGACAGGCGGACGCT....................... 24 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................................ACGAGGAGACAGGCGGACGCT....................... 21 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCT....................... 20 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................GTTGAAAAACACGAGAGGGGTCT................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GCGGCGTCTCAGTTTTCTAATTCTGT................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................ATTCGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................GTCGAGGAGACAGGCGGACGCTC...................... 23 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................ACGGCGTCTCAGTTTTCTAATTCTGT................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................GTCGAGGAGACAGGCGGACGCT....................... 22 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................ACAGCACGAGCGGCGTCTCAGTTTTCT........................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GCGGCGTCTCAGTTTTCTAAT........................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
......................................................................................AAAGGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0
.......................................................CAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................AACGAGGAGACAGGCGGACGCTCCGA................... 26 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................................GTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
..........................ATGTAAAGCACCTTCCTCGAGCCTGAGT.................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................GTTTATTGTAATTTAATTCGTTGAA.................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................CTCGTCGAGGAGACAGGCGGACGCTC...................... 26 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................AGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................ACGGCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 28 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................CACGAGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................................................................................................AGGCGGACGCTCCGACACCTGCACCT........ 26 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................ATCGAGGAGACAGGCGGACGCT....................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................................GGCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................AACGAGGAGACAGGCGGACGCT....................... 22 2 2 1.50 3 3 0 0 0 0 0
.............................................................................................................................................................................................................GTCGGGGAGACAGGCGGACGCTCCG.................... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCGAGGAGACAGGCGGACGCT....................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................CTCGAGCCTGAGTGCAGAGCCCGTAT....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..GCACAAAAAAAGTGAGACGTGTTTAT.............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................TAGTGTTTTAAGAAATATACGATTT.............................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................CTCCTCGTCGAGGAGACAGGCGGACGC........................ 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................GAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................AACGTTGAAAAACACGAGAGGGGTCT................................................. 26 2 1 1.00 1 1 0 0 0 0 0
........................TTATGTAAAGCACCTTCCTCGAGC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GAGACAGGCGGACGCTCCGACAC................ 23 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCGAGGAGACAGGCGGACGCTCCG.................... 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................GAGCGGCGTCTCAGTTTTCTAATTCT..................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GGCGTCTCAGTTTCCTAATTCTGTGT................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................AATCGTCGAGGAGACAGGCGGACG......................... 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TGTCGAGGAGACAGGCGGACG......................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CCTCGTCGAGGAGACAGGCGGACG......................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................ATTCTGTGTTTTAAGAAATATACGATTT.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................AGCACGAGCGGCGTCTCAGTTTT............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................AGAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CCGGCGTCTCAGTTTTCTAATTCTGTGT................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................GAGCGGCGTCTCAGTTTTCTAAT........................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GCGGCGTCTCAGTTTTCTAATTGTGT................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GGTCTCCGACAGCACGAGCGGCGT...................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................CTCGAGCCTGAGTGCAAAGCCCGTAT....................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CGGCGTCTCAGTTTTCTAATTCTGTAT................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TTCGGAGGTCTCCGACAGCACGAGCG.......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
............................GTAAAGCACCTTCCTCGAGCCTGAGT.................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTC...................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................ACGTCGAGGAGACAGGCGGACGCTC...................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CCGACAGCACGAGCGGCGTCTCAGT................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................AACGTCGAGGAGACAGGCGGACGCTC...................... 26 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................TTATTGTAATTTAATTCGTTGAA.................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
........................................................................GTGATCGTATAAGTTTCGGAGGTCT......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TCTCAGTTTTCTAATTCTGTGT................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................CGAGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GAGGAGACAGGCGGACGCTCCGA................... 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................CTAATTCTGTGTTTTAAGAAATATACGA................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................TTCGGAGGTCTCCGATAGCACGAGCGG......................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTCCG.................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGAAAGGCGGACGCTCCGACAC................ 27 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................AGGAGACAGGCGGACGCTCCGACAC................ 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................CTCGTCGAGGAGACAGGCGGACGC........................ 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TGAAAAACACGAGAGGGGTCTCCT.............................................. 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................AGCACGAGCGGCGTCTCAGTTTTCT........................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................GTCTCCGACAGCACGAGCGGCGT...................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................GTTGAAAAACACGAGAGGGGT................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GAGGAGACAGGCGGACGCTCCGAC.................. 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ATCGAGGAGACAGGCGGACGCTCCGAC.................. 27 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AACGAGGAGACAGGCGGACGCTCCGAC.................. 27 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................TATACGATTTCGCGTTTATTGTAAT............................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................GTCTCCGACAGCACGAGCGGCGTC..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................ATTGTCGAGGAGACAGGCGGACGCT....................... 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ATCGAGGAGACAGGCGGACGCTCCGA................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CAGCACGAGCGGCGTCTCAGTTTTCT........................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................ACAGCACGAGCGGCGTCTCAGTTTT............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GCGGCGTCTCAGTTTTCTAATTCTG.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TAGGCGGACGCTCCGACACCTGCACCT........ 27 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TCGTCGAGGAGACAGGCGGACGCTC...................... 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................CCGACAGCACGAGCGGCGTCTCAGTTTT............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................AGAGGGGTCTCCTAGTCTA........................................ 19 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................CTGTGTTTTAAGAAATATACGATTT.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................CGAGCGGCGTCTCAGTTTTCTAATTCT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................ACAGCACGAGCGGCGTCTCAGT................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................AACGTCGAGGAGACAGGCGGACG......................... 23 2 1 1.00 1 1 0 0 0 0 0
......................................................................................AACGGAGGTCTCCGACAGCACGAGC........................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCGAGGAGACAGGCGGACGCTC...................... 22 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................AGCGGCGTCTCAGTTTTCTAATT....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTCCGACA................. 26 0 1 1.00 1 1 0 0 0 0 0
......................................................GTAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................ACGGACGCTCCGACACCTGCACCTACT..... 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................ACTCAGTTTTCTAATTCTGTGT................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAGAGCCCGTATTTATCGTGATCGT.......................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................CTCCTCGTCGAGGAGACAGGCGGACGCT....................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGAGGAGACAGGCGGACGCTCCGAC.................. 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTCCGACAGCACGAGCGGCGTCTCAGTTT.............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................TCGGAGGTCTCCGACAGCACGAGC........................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................ATCCTCGTCGAGGAGACAGGCGGACGCT....................... 28 1 1 1.00 1 1 0 0 0 0 0
.....................................................................ATCGTGATCGTATAAGTTTCGGAGGT........................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAGGTCTCCGACAGCACGAGCGGCGT...................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTCCGAAAGCACGAGCGGCGTCTCAGTTTT............................................................................................................................. 30 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................ATCGTCGAGGAGACAGGCGGACG......................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................GTTGAAAAACACGAGAGGGGTCTC................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GTCGAGGAGACAGGCGGACGCTCCGACA................. 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCGAGGAGACCGGCGGACGCTCCGACA................. 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GGCGTCTCAGTTTTCTAATTCT..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CAGCACGAGCGGCGTCTCAGTTTTCTA.......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GCACGAGCGGCGTCTCAGTTTT............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.............................AAAAGCACCTTCCTCGAGCCTGAGT.................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
......................GTTTATGTAAAGCACCTTCCTCGAGC.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................AGCGGCGTCTCAGTTTTCTAATTCTGT................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................TATCGTGATCGTATAAGTTTCGGAGGT........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................CGAAGGTCTCCGACAGCACGAGCGG......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................TGCGGCGTCTCAGTTTTCTAATTCTGT................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................AATTATTGTAATTTAATTCGTTGAAA................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................TCCTCGTCGAGGAGACAGGCGGACGCT....................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................GGAGGTCTCCGACAGCACGTGCGG......................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ATCGAGGAGACAGGCGGACGCTCCG.................... 25 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................AATTTAAGAAATATACGATTTCGCGT......................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
.......................................................CAGAGCCCGTATTTATCGTGATCGTAT........................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................AAAGTTGAAAAACACGAGAGGGGTCT................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................TCTGTGTTTTAAGAAATATACGAT................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TGAAAAACACGAGAGGGGTCT................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......................AATATGTAAAGCACCTTCCTCGAGC.......................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ATCGAGGAGACAGGCGGACGCTC...................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................ACGAGCGGCGTCTCAGTTTTCTAATTCT..................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................AAGAGGAGACAGGCGGACGCT....................... 21 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................ATTATAAACACGAGAGGGGTCT................................................. 22 3 2 0.50 1 1 0 0 0 0 0
..........................................CCGAGCCGTAGTGCAGAGCCC........................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0
............................................GAGCCAGAGTACCGAGCCCG.......................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0
...................................................AGTGCAGAGTCCGTA........................................................................................................................................................................................ 15 1 6 0.17 1 0 0 0 1 0 0
........................................................................................................................................................................................................TCCTCGTCGGGGAGA................................... 15 1 8 0.13 1 0 0 0 0 1 0
....................................................................................................................................................................................GGAAAAACACGAGAG....................................................... 15 1 12 0.08 1 0 0 1 0 0 0
....................................................................................................................................................................................................GGCCTCCTAGTCGGGGAGA................................... 19 3 14 0.07 1 0 1 0 0 0 0
.........................................................................................................................................................TTTCCTGTTTATTGTAATT.............................................................................. 19 2 14 0.07 1 0 0 0 0 0 1
........................................CCTCGAGCCAGAGTAC.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................TCTGTTTTAAGAAAT....................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:8651442-8651691 - dsi_29628 TTCGTGT---------------------TTTTTTCACTCTGCACAAATACAT-TTCGTGGAA-G----------G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCATG
droSec2 scaffold_12:1548692-1548941 - TTCGTAC---------------------TTTTTTCACTCTGCACAAATACAT-TTCGTGGAA-G----------G-AGATT--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCATG
dm3 chr3R:12604924-12605174 + TTCGTGC---------------------TTTTTTCACTCTGCACAAATACATTTTCATGGAA-G----------G-AGTTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGCC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATACGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGTTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGAG-------GATG-----AGCATG
droEre2 scaffold_4770:9031421-9031678 - TTTTCGC----------------------TTTTTCACTCTGCACAAATACATTTTCGTGGAA-G----------G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCCCCA-----------------------------GC----------TCCCCAGAGGAGC---AGCTCCTCC--------GCCCG------------CCTGCGA-------------GGATGAGGACGTG-------GTTG-----AGCATG
droYak3 3R:11788749-11789005 - GTTCCGC---------------------TTTTTTCACTCTGCACAAACACATTTTCGTGGAA-GGAGCA--G--G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGATGAGGACGTG-------GATG-----AGCATG
droEug1 scf7180000409804:20-282 + TAAGTAG--------------------TTTTTCTCTCCCTGCACAAATACATTTTCGTGGAA-CGAGCGACG--G-AGATC--AGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGGCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG---TCG------CGTCCAA-------------AGATGAGGATGAA-------GTTG-----AGGCTG
droBia1 scf7180000299102:540225-540507 + TACTTATTA-TACATAATG-----AATA-TTTTTTTCTCTGCACAAATACATTTTCGTGGAATGGAGCT-----G-AGTTC--GGACTCACGTCCCGCGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GGTCG------------CCACCGA-------------GGACGGGGATGCGATGGCGTTGTGGCTGCGGCATG
droTak1 scf7180000415580:59973-60223 - T---------------------------TTTTTTCTCTCTGCACAAATACATTTTCGTGGAA-CGAGCG-----GAGGCTC--GGACTCACGTCCCGTGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GGCCGCCGTCGCCATCTCCGTCGA-------------GGATGAGG------------------------ATG
droEle1 scf7180000486474:1637966-1638224 + TTTTTATTGCTAATCAATGGCAGTATTATTTTTTCTCTCTGCACAAATACATTTTCGTGAAA-CGAACG-----G-AGCTC--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGT---TGCTCCTCT--------GGCCG------------CCGTCGA-------------GG------------------------------ATG
droRho1 scf7180000779004:2944-3186 + TGCAACA---------------------TTTTTTCTCTCTGCACAAATATATTTTCGAGGAA-CGAGGGACGTGG-AGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TGCTCCTCC--------GGCCG------------CCGTCGA-------------GG------------------------------ATG
droFic1 scf7180000452523:35849-36098 + TA--TAC---------------------TTTTCTCTCTCTGCACAAATACATTTTCGTGGAA-CGATCT-----G-AGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTC------------CG------------CCGGCGA-------------GGATGAAGATGCG-------GATG-----ACGACG
droKik1 scf7180000302313:68301-68536 + TTTG----------------------------------GTGCACAAATACATTTTCATGGAA-CGAGCG-----G-TGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCGGAGGAGC---TTCG---------------CCG------------CAGTCGA-------------GGATGCGGATGAG-------CATG-----CGAATG
droAna3 scaffold_13340:7290248-7290506 - TTGTTGCC--TAC--------------ATTTTTTCTCCCTGT---------TATTCGAGGAC-T----------G-AGGTCCAAGACTCACGTCCCAGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TTCA---------------CCG------------CATTCGAAACTGAGACCAGAGACTGGGGATGGGA------GAGGACC--GGCATG
droBip1 scf7180000396708:1564081-1564290 + ------------------------------------------------------------------------------------GACTCACGTCCCAGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TTCA---------------CCG------------CATTCGAAACTGAGAC-AGAGACTGGAGACGGG-------CATGACT--GGCATG
dp5 2:17585243-17585496 + ----------------------------------------------------------GGAG-CGAGCGCCG--------G--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGCA--------GTGGGTCTCGC----------------------------------------------TCTC------------------------------CTGCTTACCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAATGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-GTCCTTTCGACCATC--------------ATCCTGCCTCCGCTCTGTTTTTCAG----TTCTGCTGTCTGTGGGCCTTTGGAGCCGC----------------------------------------------------------------CGG-------ACTG-----AAGCTG
droPer2 scaffold_0:11435480-11435749 + ----------------------------------------------------------GGAG-CGAGCGCCG--------G--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGCA--------GTGGGTATCGCT-------CTCCAGCT-CTCCTGC----------------------TCTC------------------------------CTGCTTACCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAATGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-GTCCTTTCGACCATC--------------ATCCTGCCTCCGCTCTGTTTTGCAG----TTCTGCTGTCTGTGGGCCTTTGGAGCCGC----------------------------------------------------------------CGG-------ACTG-----AAGCTA
droWil2 scf2_1100000004943:5000995-5001230 - -------------------------------------------------------CGAAGAT-G----------G-AGCTT--TGACTCACGTTCCGGGCATAAATAGTGCTAGCATATTCAAAGCCTC-AGAGACGACTGCTGGATGGGTCTCTC-----------TGGTTTCGC------------------------TTGCTC------------------------------AAGCTCACCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAAAGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-AGCATCT--------------------------------CTGCTCGATTCTCCGGTCGCTTCTCTTGTCTCATGTCCCT--------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:5647018-5647253 - --------------------------------------------------------------------------------------CTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATC-AGAGGCGTAC----------------G----------------------------------------------CTCAAGCTCAGGCTCAGGCTCGGGCTTGGGCACGGGTTCGCCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-GGCGTCTTCG-------ACAGCGTCTCC--A-----------------------------TCTGTTGTCGGTGCGCCGGAGGAGCCAACGCTCC------------------------------------------------------------------------------GCATG
droMoj3 scaffold_6540:16039432-16039657 - --------------------------------------------------------------------------------------CTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATCT-GAGGCGTAC----------------GGTCGGTGCT--GCCT-CTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTG------------------------------G----AGCCAAAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCCCGGCGTCTTCG-GCATCGACAGCGTCTCC--A-----------------------------TCTGTTGTCGG--------------------------------------------------------------------------------------------------------TG
droGri2 scaffold_14906:11012827-11013041 - ------------------------------------------------------------------------------------GGCTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATC-AGAGGC------------------------------------------------------------------GTAC--------------------------------GCTCGCCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATTTGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-GGCATCTTCG-------GCAGCGTCTCC--A-----------------------------TCTGTTGTCTGTGCGCCGGAGGAGCCAAAGCTCCGCTCTGCTTGTGGCTA------------CC-----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCGTGT---------------------TTTTTTCACTCTGCACAAATACAT-TTCGTGGAA-G----------G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----AGCA..26153.0053000000000000530000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----AGCAA.27113.0013000000000000130000
...............................................................................................................................TCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAG...........................................................................................................................................................................................................................................................2818.00800000000000080000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------GGCTGTGGACGTG-------GATG-----AGCAT.2418.00800000000000080000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----AGC...2517.00700000000000070000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------GGCTGTGGACGTG-------GATG-----AGCATG2517.00700000000000070000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCC....................................................................................................................................................................................................................................................................................................................................................................................2415.00500000000000050000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGACGTG-------GATG-----AGCATG2114.00400000000000040000
...............................................................................................................................TCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGA............................................................................................................................................................................................................................................................2714.00400000000000040000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGACGTG-------GATG-----AGCAT.2113.00300000000000030000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTCA............................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300000000000030000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTG............................2513.00300000000000030000
...................................................................................................................................................................................................................................................................TTAAGACACAAAATTCTTTATATGC..........................................................................................................................................................................................................................2513.00300000000000030000
..............................TTTTCACTCTGCACAAATACAT-TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300000000000030000
...............................................................................................................................TCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAA...........................................................................................................................................................................................................................................................2813.00300000000000030000
...............................................TACAT-TTCGTGGAA-G----------G-AGCTC--GGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000000030000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------GGCTGTGGACGTG-------GATG-----AGCAA.2413.00300000000000030000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCT--------GTCCG------------CCTGCGA-------------GGCTGT.............................2413.00300000000000030000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTCACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----AGCAT.2712.00200000000000020000
...............................................................................................................TAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGT.........................................................................................................................................................................................................................................................................................................2812.00200000000000020000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCCA...................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
.............................................................................................................................................................................................................................................TGCTCGCCGCAGAGTCAAAAGATTAAG..............................................................................................................................................................................................................................................2712.00200000000000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----......2612.00200000000000020000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCCAGAGG...............................................................................................................................................................................................................................................................................................................................................................................2912.00200000000000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG------------CCTGCGA-------------GGCTGTGGACGTG-------G..............2412.00200000000000020000
...................................................................................................................................GAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTC.........................................................................................................................................................................................................................................................2612.00200000000000020000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTCACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
...................................................................................GGACTCACGTCTCGGGCATAAATAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000000000020000
.............................................AATACAT-TTCGTGGAA-G----------G-AGCTC--GGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
...................................................................................................................................GAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAA.......................................................................................................................................................................................................................................................2812.00200000000000020000
.....................................................................................................................................................................................................................................................................................................AATAACATTAAATTAAGCAACTTT.........................................................................................................................................................................................2412.00200000000000020000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCCAGA.................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
..........................................ACAAATACAT-TTCGTGGAA-G----------G-AGCTC--...................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
.......................................................CGTGGAA-G----------G-AGCTC--GGACTCACGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...............................................TACAT-TTCGTGGAA-G----------G-AGCTC--GGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.................................TCACTCTGCACAAATACAT-TTCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................AGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGA............................................................................................................................................................................................................................................................2411.00100000000000010000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCC..2811.00100000000000010000
................................................................................C--GGACTCACGTCTCGGGCATAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--------GTCCG------------CCTGCGA-------------GGCTGTGGA..........................2411.00100000000000010000
.......................................................CGTGGAA-G----------G-AGCTC--GGACTCACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA-------------GGCTGTGGACGTG-------GATG-----AGCAT.2611.00100000000000010000
...............................................................................................................................................................................................................................................................................................AGCGCAAATAACATTAAATTAAGCAAC............................................................................................................................................................................................2711.00100000000000010000
...................................................................................................................................................................................................................................................................................................................AAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGA.................................................................................................2611.00100000000000010000
.....................................TCTGCACAAATACAT-TTCGTGGAA-G----------G-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------GGCTGTGGACGTG-------GATG-----AGC...2111.00100000000000010000
............................................................................................................................................................................................................................................................................................TAAAGCGCAAATAACATTAAATTA..................................................................................................................................................................................................2411.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--------GTCCG------------CCTGCGA-------------GGCTGTGGAA.........................2511.00100000000000010000
...............................................................................................CGGGCATAAATAGCACTAGCATATTC.............................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.TCGTGT---------------------TTTTTTCACTCTGCACAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCCT...................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
TTCGTGT---------------------TTTTTTCACTCTGCACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----A.....2311.00100000000000010000
...................................................................................................................................................................................................................................................................................................................AAGCAACTTTTTGTGCTC-------------------------TC......................................................................................................................................................2011.00100000000000010000
...................................................T-TTCGTGGAA-G----------G-AGCTC--GGACTCACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...............................................................................................................................TCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGC...............................................................................................................................................................................................................................................................2411.00100000000000010000
...............................................TACAT-TTCGTGGAA-G----------G-AGCTC--GGACTCA............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------CCTGCGA-------------GGCTGTGGACGTG-------G..............2311.00100000000000010000
...................................................................................................................................GAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCA........................................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGCTG..............................2811.00100000000000010000
.......................................TGCACAAATACAT-TTCGTGGAA-G----------G-AGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..................................CACTCTGCACAAATACAT-TTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-------------GGCTGTGGACGTG-------GATG-----AGCATG2611.00100000000000010000
...............................................TACAT-TTCGTGGAA-G----------G-AGCTC--GGACTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
.......................................................................................TCACGTCTCGGGCATAAATAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...................................................................................................................................................................................................................................................................TTAAGACACAAAATTCTTTATATG...........................................................................................................................................................................................................................2411.00100000000000010000
................................................................................C--GGACTCACGTCTCGGGCATAAAT............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
........................................................GTGGAA-G----------G-AGCTC--GGACTCACGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.....................................................TTCGTGGAA-G----------G-AGCTC--GGACTCACGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-------------GGCTGTGGACGTG-------GATG-----AGCAT.2511.00100000000000010000
...................................................................................................................................GAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAA......................................................................................................................................................................................................................................................2911.00100000000000010000
......................................................................................CTCACGTCTCGGGCATAAATAGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
....................................................................................GACTCACGTCTCGGGCATAAATAG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..............................................................................................TCGGGCATAAATAGCACTAGCATATTC.............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.......................................................CGTGGAA-G----------G-AGCTC--GGACTCACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGA-------------GGCTGTGGACGTG-------GATG-----AG....2411.00100000000000010000
...................................................................................................................................GAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAT.......................................................................................................................................................................................................................................................2811.00100000000000010000
...............................................................................................CGGGCATAAATAGCACTAGCATATTCA............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................................................................................................................GATTAAGACACAAAATTCTTTATA.............................................................................................................................................................................................................................2411.00100000000000010000
..............................................................................................TCGGGCATAAATAGCACTAGCATATTCA............................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCA..3011.00100000000000010000
.........................................................TGGAA-G----------G-AGCTC--GGACTCACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCT--------GTCCG------------CCTGCGA-------------GGCTG..............................2311.00100000000000010000
...............................................................G----------G-AGCTC--GGACTCACGTCTCGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.....................................................................................ACTCACGTCTCGGGCATAAATAGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.......................................................................................TCACGTCTCGGGCATAAATAGCACA......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
......................................................TCGTGGAA-G----------G-AGCTC--GGACTCACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------GGCTGTGGACGTG-------GATG-----AGCA..2311.00100000000000010000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................TAAGACACAAAATTCTTTA...............................................................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................AGCACTAGCATATTCAAAGCCTCTGC..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................AAATAACATTAAATTAAGCAACTTTA........................................................................................................................................................................................2611.00100000000000010000
...............................................................................TC--GGACTCACGTCTCGGGCATAA..............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.......................................................................................TCACGTCTCGGGCATAAATAAA.........................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000000000010000
droSec2
TTCGTAC---------------------TTTTTTCACTCTGCACAAATACAT-TTCGTGGAA-G----------G-AGATT--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGTG-------GATG-----AGCATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTCGTGC---------------------TTTTTTCACTCTGCACAAATACATTTTCATGGAA-G----------G-AGTTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGCC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATACGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGTTCCTCT--------GTCCG------------CCTGCGA-------------GGCTGTGGACGAG-------GATG-----AGCATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................AAATACATTTTCATGGAT-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
TTTTCGC----------------------TTTTTCACTCTGCACAAATACATTTTCGTGGAA-G----------G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCCCCA-----------------------------GC----------TCCCCAGAGGAGC---AGCTCCTCC--------GCCCG------------CCTGCGA-------------GGATGAGGACGTG-------GTTG-----AGCATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GTTCCGC---------------------TTTTTTCACTCTGCACAAACACATTTTCGTGGAA-GGAGCA--G--G-AGCTC--GGACTCACGTCTCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TGTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG------------CCTGCGA-------------GGATGAGGACGTG-------GATG-----AGCATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TAAGTAG--------------------TTTTTCTCTCCCTGCACAAATACATTTTCGTGGAA-CGAGCGACG--G-AGATC--AGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGGCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GTCCG---TCG------CGTCCAA-------------AGATGAGGATGAA-------GTTG-----AGGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TACTTATTA-TACATAATG-----AATA-TTTTTTTCTCTGCACAAATACATTTTCGTGGAATGGAGCT-----G-AGTTC--GGACTCACGTCCCGCGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GGTCG------------CCACCGA-------------GGACGGGGATGCGATGGCGTTGTGGCTGCGGCATGSizeHit CountTotal NormTotal
No Reads
droTak1
T---------------------------TTTTTTCTCTCTGCACAAATACATTTTCGTGGAA-CGAGCG-----GAGGCTC--GGACTCACGTCCCGTGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTCT--------GGCCGCCGTCGCCATCTCCGTCGA-------------GGATGAGG------------------------ATGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTTATTGCTAATCAATGGCAGTATTATTTTTTCTCTCTGCACAAATACATTTTCGTGAAA-CGAACG-----G-AGCTC--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGT---TGCTCCTCT--------GGCCG------------CCGTCGA-------------GG------------------------------ATGSizeHit CountTotal NormTotal
No Reads
droRho1
TGCAACA---------------------TTTTTTCTCTCTGCACAAATATATTTTCGAGGAA-CGAGGGACGTGG-AGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TGCTCCTCC--------GGCCG------------CCGTCGA-------------GG------------------------------ATGSizeHit CountTotal NormTotal
No Reads
droFic1
TA--TAC---------------------TTTTCTCTCTCTGCACAAATACATTTTCGTGGAA-CGATCT-----G-AGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCAGAGGAGC---AGCTCCTC------------CG------------CCGGCGA-------------GGATGAAGATGCG-------GATG-----ACGACGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTG----------------------------------GTGCACAAATACATTTTCATGGAA-CGAGCG-----G-TGCTC--GGACTCACGTCCCGGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCTC-------------------------TCC-----------------------------------------------CCGGAGGAGC---TTCG---------------CCG------------CAGTCGA-------------GGATGCGGATGAG-------CATG-----CGAATGSizeHit CountTotal NormTotal
No Reads
droAna3
TTGTTGCC--TAC--------------ATTTTTTCTCCCTGT---------TATTCGAGGAC-T----------G-AGGTCCAAGACTCACGTCCCAGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TTCA---------------CCG------------CATTCGAAACTGAGACCAGAGACTGGGGATGGGA------GAGGACC--GGCATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
------------------------------------------------------------------------------------GACTCACGTCCCAGGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGC------------------------------------------------------------------TCTC------------------------------GTGCTCGCCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAGCGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-------------------------TCC-----------------------------------------------CCAGAGGAGC---TTCA---------------CCG------------CATTCGAAACTGAGAC-AGAGACTGGAGACGGG-------CATGACT--GGCATGSizeHit CountTotal NormTotal
No Reads
dp5
----------------------------------------------------------GGAG-CGAGCGCCG--------G--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGCA--------GTGGGTCTCGC----------------------------------------------TCTC------------------------------CTGCTTACCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAATGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-GTCCTTTCGACCATC--------------ATCCTGCCTCCGCTCTGTTTTTCAG----TTCTGCTGTCTGTGGGCCTTTGGAGCCGC----------------------------------------------------------------CGG-------ACTG-----AAGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
----------------------------------------------------------GGAG-CGAGCGCCG--------G--GGACTCACGTCCCGAGCATAAATAGCACTAGCATATTCAAAGCCTCCAGAGGCA--------GTGGGTATCGCT-------CTCCAGCT-CTCCTGC----------------------TCTC------------------------------CTGCTTACCGCAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAATGCAAATAACATTAAATTAAGCAACTTTTTGTGCCC-GTCCTTTCGACCATC--------------ATCCTGCCTCCGCTCTGTTTTGCAG----TTCTGCTGTCTGTGGGCCTTTGGAGCCGC----------------------------------------------------------------CGG-------ACTG-----AAGCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-------------------------------------------------------CGAAGAT-G----------G-AGCTT--TGACTCACGTTCCGGGCATAAATAGTGCTAGCATATTCAAAGCCTC-AGAGACGACTGCTGGATGGGTCTCTC-----------TGGTTTCGC------------------------TTGCTC------------------------------AAGCTCACCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAAAGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-AGCATCT--------------------------------CTGCTCGATTCTCCGGTCGCTTCTCTTGTCTCATGTCCCT--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
--------------------------------------------------------------------------------------CTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATC-AGAGGCGTAC----------------G----------------------------------------------CTCAAGCTCAGGCTCAGGCTCGGGCTTGGGCACGGGTTCGCCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-GGCGTCTTCG-------ACAGCGTCTCC--A-----------------------------TCTGTTGTCGGTGCGCCGGAGGAGCCAACGCTCC------------------------------------------------------------------------------GCATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................G----------------------------------------------CTCAAGCTCAGGCTCAGG.........................................................................................................................................................................................................................................................................................1930.331001000000000000000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------CTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATCT-GAGGCGTAC----------------GGTCGGTGCT--GCCT-CTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTG------------------------------G----AGCCAAAGAGTCAAAAGATTAAGACACAAAATTCTTTATATGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCCCGGCGTCTTCG-GCATCGACAGCGTCTCC--A-----------------------------TCTGTTGTCGG--------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
------------------------------------------------------------------------------------GGCTCACGTCTGGGGCATAAATAGCACTAGCATATTCAAAGCATC-AGAGGC------------------------------------------------------------------GTAC--------------------------------GCTCGCCGCAAAGTCAAAAGATTAAGACACAAAATTCTTTATTTGCTAAAACGCAAATAACATTAAATTAAGCAACTTTTTGTGCC-GGCATCTTCG-------GCAGCGTCTCC--A-----------------------------TCTGTTGTCTGTGCGCCGGAGGAGCCAAAGCTCCGCTCTGCTTGTGGCTA------------CC-----------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:18 PM