dsi_29614

CDS [3r_26314847_26314984_-]; exon [3r_26314847_26314984_-]; intron [3r_26314273_26314846_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTGCTGTCAAGCTGTCCCTTTTTTAGTCCCTTCACTTTTTGTCGGTTGGCACTCAATTAAACAGTTGACTCCAAGGGAAAACTTGCCAACTGATTGCGAGTGGAGAGTTTGTTTTCCCTTTAGTTTCCCAGGATCTAGCCATGCCTTGTTTGCTTTCGTGATTTGTTCGCCAATCTAAAGGAAGAAAGTAAAGTGC ************************************************....((.(((..((((((.........(((...((((((((...(((((((((((...........((((..(((...)))..)))))))))))))))...))))))))...))).........))))))..))).))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR902008 ovaries	M053 female body	GSM343915 embryo	SRR618934 dsim w501 ovaries	M024 male body	M025 embryo	M023 head	SRR553487 NRT_0-2 hours eggs
...............ATACGACGAACGGTGAGGCTGGA....................................................................................................................................................................................................................	23	3	1	5.00	5	3	2	0	0	0	0	0	0	0
................TACGACGAACGGTGAGGCTGGA....................................................................................................................................................................................................................	22	3	1	3.00	3	2	1	0	0	0	0	0	0	0
...............ATACGACGAACGGTGAGGCTGG.....................................................................................................................................................................................................................	22	3	1	3.00	3	2	1	0	0	0	0	0	0	0
...............ATACGACGAACGGTGAGGCTG......................................................................................................................................................................................................................	21	3	2	2.50	5	5	0	0	0	0	0	0	0	0
...............ATACGACGAACGGTGAGGCTGGAG...................................................................................................................................................................................................................	24	3	1	2.00	2	0	2	0	0	0	0	0	0	0
..............GATTCGACGAAGGTCGCGGGT.......................................................................................................................................................................................................................	21	3	1	1.00	1	0	0	0	0	1	0	0	0	0
........GGAGGTGATACGACGAAGGGC.............................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.TGAGGCCGGAGGTGATACGACGAAGG...............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............................CGAGGGTGGAGTTCCTGCATATGTC.....................................................................................................................................................................................................	25	1	1	1.00	1	0	0	0	1	0	0	0	0	0
......................GAAGGGCGAGGGTGGAGT..................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...............ATACGACGAAGGGCGAGGGTG......................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................GGGTGGAGTTCCTGCATATGTCGG...................................................................................................................................................................................................	24	2	1	1.00	1	0	0	1	0	0	0	0	0	0
..............................................................................AGTCCCTTCACTTTTTGTCGGTTGGC..................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	1	0	0
................TACGACGAACGGTGAGGCTGG.....................................................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTGTTTGCGTTAGTGATT.................................	19	2	5	0.20	1	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................TGATCTAGCCATGCC...................................................	15	1	19	0.16	3	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................GCCAGTGGAGAGTGTGTTT..................................................................................	19	2	10	0.10	1	0	0	0	0	1	0	0	0	0
........................AGTGCGATGGTGGAGT..................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0

GACTCCGGCCTCCACTATGCTGCTTCCCGCTCCCACCTCAAGGACGTATACATTCACGACAGTTCGACAGGGAAAAAATCAGGGAAGTGAAAAACAGCCAACCGTGAGTTAATTTGTCAACTGAGGTTCCCTTTTGAACGGTTGACTAACGCTCACCTCTCAAACAAAAGGGAAATCAAAGGGTCCTAGATCGGTACGGAACAAACGAAAGCACTAAACAAGCGGTTAGATTTCCTTCTTTCATTTCACG ************************************************....((.(((..((((((.........(((...((((((((...(((((((((((...........((((..(((...)))..)))))))))))))))...))))))))...))).........))))))..))).))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O001 Testis	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
..............................................................................................................................................................................ACCAAAGGGCCCTAGATCAGT.......................................................	21	3	1	1.00	1	1	0	0	0
..........................CCGCTCCCACCTCAAGGACGTATACATTC...................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0
.....................................................................GGGAATACATCAGGGGAGT..................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0
.....................................TCAAGGACTTAAACATCCAC.................................................................................................................................................................................................	20	3	12	0.08	1	0	0	0	1
..........................................................................................................................................................................GGAAACCAAAGGGCCCT...............................................................	17	2	19	0.05	1	1	0	0	0
.........................................................................................................................................................................................CTAGATCGCTAGAGAACAA..............................................	19	3	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:26314647-26314896 -	dsi_29614	CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTGCTGTC---AAGCTGT-------------CCC----TTTTTT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGGATCTA-------GCCATGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTAAAGGAA-----GAAAGT----AA--------AGTGC
droSec2	scaffold_4:5829295-5829541 -		CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTG--GTC---AAGCTGT-------------CCC----T-TTTT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--T-CCTTT-AGTTT-CCCAGGATCTA-------GCCGTGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTAAAGGAA-----GAAAGT----AA--------AGTGC
dm3	chr3R:27011171-27011417 -		CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGTGTTCCTGCATATGTAAGTG--GTC---AAACTAT-------------CCC----TTTTTT----AGTCCCCTCACTCTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAAGAAAAACTTGCCAACTAA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--G-CCTTT-AGTTT-CCCAGGATCTA-------GCCATGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTGAG-GAA-----GAAAGT----AA--------AGTGC
droEre2	scaffold_4820:973616-973864 +		CTGAGGCCGGAGGTGATACAACGAAGGGCGAGGGCGGAGTTCCTGCATATGTAAGTG--CTC---AAAGTAT-------------CCT----T-TTTT----AGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGTGTGAGTGGAC-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGAATCTA-------GGCATGCCTTGTTTGCTT------------TGGTGATTTGTTCACCAATCTAAAGGAA-----GAAAGT----GA--------AGTGC
droYak3	3R:27946954-27947200 -	dya_1174	CTGAGGCTGGAGGAGATACAACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTG--GTC---AAACTAT-------------CCC----T-TTTT----AGTCCTTTCCCTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCCACTGA------TTGC--GTGTGGGG-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGGATCTA-------GCCCTGCCTTGTTTGCTT------------TGATGATTTGTTCGCCAATCTAGAATGA-----GAAAGT----AA--------AGTGC
droEug1	scf7180000409166:22095-22346 +		CTGAGGCCGGAGGTGATACGACAAAGGGCGAGGGCGGTGTCCCTGCATACGTAAGTG--GTC---AAACTCC-------------CCCGT--TTTTTT----AGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGATT---CCAAGGGAAAACTTGCTAACTGA------ATGG--GAGTGAAG-AG----------GTTTGTTTT--CCCCTCT-AGCTC-TTCAGCATTCA-------GCCTTGGCATGTTTGCTA------------TGCTGATTTGTTCGGCAATCAAAAGGGA-----AGAAAG----AA--------ATTGC
droBia1	scf7180000302113:303119-303338 +		CTGAGGCTGGAGGCGATACGACAAAGGGCGAGGGCGGAGTTCCTGCATACGTAAGTG--GTC---AAACTCT-------------CCT----TTTTTC----CGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACC--ACCAGGGGAAAACTTGCCAACTGA------TTGT--GGGGCAAG-AG----------GTTTGTT-----------------------------------------GGCATGTTTGCTC------------CGGTGATTTGTTCGGCAATCAAAAGGGA------GAAGT----AA--------AGTGC
droTak1	scf7180000415286:124315-124575 -		CTGAGGCTGGAGGCGATACGACAAAAGGCGAGGGCGGAGTTCCTGCATATGTAAGTG--GTC---AAGTTCT-------------CCCTTTTTTTTCT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCAGTCAATTAAACAGTTGATTCTCTCAGGGGAAAACTTGCCAACTGA------TTGTGTGAGTGAAG-AG----------TTTTGTTTTTTGCCCTTT-AGTTG-TCCAGCATTCA-------GCCTTGGCATGTTTGCCT------------TGGTGATTTGTTCGGCAATCAAAAGGGT-----AAAAGT----AA--------AGTGC
droEle1	scf7180000491194:1011499-1011737 -		CGGAGGCCGGAGGTGACACGACAAAGGGCGAGGGCGGTGTTCCTGCATATGTAAGTG--GTC---AGACTCT-------------CCCTT--TTTTTC----AGTCCCTTCAGTTTTTGTCG-----------------------------------GTTGGCGCTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCTAACTGA------TTGT--GCCTGAAG-AG----------GTTTGTTTT--CCACTTA-AGTTT-CCCAAAA--------------------TGTTTGCTT------------TGATGATTTGTTCGGCAATCAAAGAGGA-----TGAAGT----AA--------ATTGA
droRho1	scf7180000777206:321538-321777 +		CTGAGGCCGGAGGTGATACGACAAAAGGCGAGGGCGGTACTCCTGCATATGTAAGTG--GTC---AAACGCT-------------CCCTT--T--TTT-TCCACTTCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCCAGGGAAAACTTGCTGACTGA------TTGT--GACTGAAG-AG----------GTTTGTTTT--CCTCTTT-AGTTT-CCCAGGA--------------------TGTTTGCTT------------TGCTGATTTGTTCTGCAATCAAAAGGGA-----AAAAGT----AG--------AGAGG
droFic1	scf7180000453782:295041-295271 +		CTGAGGCCGGAGGAGATACTACCAAAGGAGAAGGCGGTGTTCCTGCATATGTATGTG--GTC---GAAATCC-------------CTC----T-TTTT----AGT-----CATTTTTTGTCG-----------------------------------GTGCACACTCAATTAAACAGTTGACT---CTGAGGGA-AACTTGCCAACTGA------TTGG--AAGAGAAGCAG-----------TTGGTTGT----------------------ATCTAGCATTCCCACTTGCCGTGTTTGCAT------------TGGCGATTTGTTGGGCAGCCAGGAGGAA------AAAGA----AA--------AGTGA
droKik1	scf7180000301923:122831-123084 -		CCGAAGCTGGAGGAGATACGACCCAGGGAGCTGGCGGTGTTCCTGCATTCGTAAGTG--GTCCTTGGACTTTTTC-------TACTT-----TTTTTT----AGTTTATTTCCATTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCGTAGGAAACTTTGCCAACTGA------TTGT--GAGGGAAG-GG-----------TGGGCTAC--C-CCTTTTGGTTTCCCCAGGAT----------GTTCTGTCCTGTTTGCTT------------AGGTGATTCGTTGGACAATCAAAAAGAA------TTAGT----AA--------AGAGA
droAna3	scaffold_13340:14395829-14396072 -		CTGAGGCAGGAGGAGATACCACCACAGGAGCCGGTGGTGTTCCTGCATTCGTAAGTG--TCTCT-GAACTGTCCCTGAACTCTGACCC----T-TGTT----TGCTCATTCACTTTTTGCCT-----------------------------------GCTAGCACTCAATTAAGCAGTTGATT---GCAAAGAAAAACTTTTCCAGAGAAGGGTTTTCC--GAGAGGAC-TG-----------TTTGCTTC--G-CC----ATTTT-CCCA---------------------------------------------TGTGATTTATCCTTAAATCAAAAAGAATCTGAGAAGAG----AA--------AGTAT
droBip1	scf7180000395971:769318-769555 +		CTGAGGCAGGAGGAGATACCACCACAGGAGCGGGTGGTGTGCCAGCATTCGTAAGTG--TCCCT-GAACTGCTCCTGAACTCTGACCC----T-TGTT----TGCTCATTCACTTTTTGCCT-----------------------------------GTTGGCACTCAATTAAGCAGTTGATT---GCAAAGAAAAACTTCCCAAGTG------------------GGG-GG-----------TT--------------------T-CCCAG----------------------TTTTTGCTTTACCACTTTCCCATGTGATTCATTCTTAAATCAAAAGGAATCTGTAAAGAG----AA--------AGGAC
dp5	2:121159-121371 +		CAGAGGCTGGCGGTGATACCACCAAGGGCGAGGGCGGCACTCCGGCTTATGTAAGTT----------------------------CTT----C-TTTTTGTTGTTTCTTTCG----GAATTA-----------------------------------AT-----TTCAATTAAACGGAGGA------------GAG--------------------G------------C--TGAGTGCGTAATTTACCTT--T-CTCCT-CGCTC-TCC---------------TCTCCGTCATGTTTGCTT------------TGTTAATGTGTTGAGCAATCAAAGAGAG-----AGCATTAGAGAAGGGGAGCCTGTGT
droPer2	scaffold_7:2912844-2913048 +		CAGAGGCTGGCGGTGATACCACCAAGGGCGAGGGCGGCACTCCGGCTTATGTAAGTT----------------------------CTT----C-TTTTTGTTGTTTCTTTC----GGAGTTA-----------------------------------AT-----TTCAATTAAACGGAGGA------------GAG--------------------G------------C--TGAGTGCGTAATTTACATT--T-CTCCT-CGCTC-TCC---------------TCTCCGTCATGTTTGCTT------------TGTTAATGTGTTGAGCAATCAAAGAGAG-----AGCATTAGAGGA--------TGTGT
droWil2	scf2_1100000004921:677604-677684 -		CAGAGGCTGGTGGTGATACAACCAAGGGCGAGGGTGGCACTCCAGCATATGTAAGTT--GCC------------------------------T-TTAT----TTTCCTTTCATTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12855:1268703-1268874 +		CCGAAGCGGGCGGTGATACGACGAAGGGCGAGGGCGGTGTGCCTGCATTTGTAAGTC--TCTTT-GAAATTT-------------CTCTTT-TCATAT----AGTTTTCAAACTTTACAACTTTCTGCGTGTTTTGGCTGCAGCGCGTACACGTTTTGGTCGCACTTAATTAAACATTTTGCA---CAATGGGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:27015827-27015882 +		CTGAGGCGGGCGGCGATACGACCAAGGGCGAGGGCGGTGTGCCCGCATTCGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_2695:649-704 +		CTGAGGCTGGCGGCGATACGACAAAGGGCGAGGGCGGTGTTCCCGCATACGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTGCTGTC---AAGCTGT-------------CCC----TTTTTT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGGATCTA-------GCCATGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTAAAGGAA-----GAAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........GGAGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGAGGCCGGAGGTGATACGACGAAGG..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGAGGGTGGAGTTCCTGCATATGTC................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................GAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATACGACGAAGGGCGAGGGTG.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGC..................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTG--GTC---AAGCTGT-------------CCC----T-TTTT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--T-CCTTT-AGTTT-CCCAGGATCTA-------GCCGTGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTAAAGGAA-----GAAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............GATACGACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0
.................ACGACGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...............ATACGACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................GACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...............ATACGACGAAGGGCGAGGG...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........AGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...............ATACGACGAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
............................CGAGGGTGGAGTTCCTGC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..............GATACGACGAAGGGCGAGGGTGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.............................GAGGGTGGAGTTCCTGCATATGTC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.....................CGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
CTGAGGCCGGAGGTGATACGACGAAGG..........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
........GGAGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................GAGGGTGGAGTTCCTGCATAT...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................ACGACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........GGAGGTGATACGACGAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
..........................GGCGAGGGTGGAGTTCCTGC.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
................TACGACGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0

dm3

CTGAGGCCGGAGGTGATACGACGAAGGGCGAGGGTGGTGTTCCTGCATATGTAAGTG--GTC---AAACTAT-------------CCC----TTTTTT----AGTCCCCTCACTCTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAAGAAAAACTTGCCAACTAA------TTGC--GAGTGGAG-AG-----------TTTGTTTT--G-CCTTT-AGTTT-CCCAGGATCTA-------GCCATGCCTTGTTTGCTT------------TCGTGATTTGTTCGCCAATCTGAG-GAA-----GAAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........GGAGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	3	0	0	0	0	0	0
...........GGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
...........................GCGAGGGTGGTGTTCCTGC.......................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0
........................AGGGCGAGGGTGGTGTTCCT.........................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
..............GATACGACGAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0
..............GATACGACGAAGGGCGAGGGTGGT...............................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0
...............ATACGACGAAGGGCGAGGGTG.................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
........GGAGGTGATACGACGAAG...........................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......CGGAGGTGATACGACGAAGGGCG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............TGATACGACGAAGGGCGAGGGTGGT...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................CGAGGGTGGTGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................AAGGGCGAGGGTGGTGTTCCTGC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........AGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................GGTGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTGAGGCCGGAGGTGATACAACGAAGGGCGAGGGCGGAGTTCCTGCATATGTAAGTG--CTC---AAAGTAT-------------CCT----T-TTTT----AGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCAACTGA------TTGTGTGAGTGGAC-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGAATCTA-------GGCATGCCTTGTTTGCTT------------TGGTGATTTGTTCACCAATCTAAAGGAA-----GAAAGT----GA--------AGTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................GCGAGGGCGGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	3	0	0
..............GATACAACGAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	0	1	0	1	0
.................ACAACGAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0
...........GGTGATACAACGAAGGGCGAGGG...................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
......CCGGAGGTGATACAACGAAGGG.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................GGGCGAGGGCGGAGTTCC..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
....GGCCGGAGGTGATACAACGAAGGG.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....GGCCGGAGGTGATACAACGA.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........GGAGGTGATACAACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................AGGGCGAGGGCGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........GGTGATACAACGAAGGGCG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...............ATACAACGAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................GGCATGCCTTGTTTGCTT------------TGGT......................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....GCCGGAGGTGATACAACGAA............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............................GGGCGGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............GATACAACGAAGGGCGAGGGCGGAGTT............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
............GTGATACAACGAAGGGCGAGGG...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................GGCGGAGTTCCTGCATATGTC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............GATACAACGAAGGGCGAGGGCGGAGT.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

droYak3

CTGAGGCTGGAGGAGATACAACGAAGGGCGAGGGTGGAGTTCCTGCATATGTAAGTG--GTC---AAACTAT-------------CCC----T-TTTT----AGTCCTTTCCCTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCCCACTGA------TTGC--GTGTGGGG-AG-----------TTTGTTTT--C-CCTTT-AGTTT-CCCAGGATCTA-------GCCCTGCCTTGTTTGCTT------------TGATGATTTGTTCGCCAATCTAGAATGA-----GAAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................ACAACGAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
.....GCTGGAGGAGATACAACGAAGG..........................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................AACTTGCCCACTGA------TTGC--GTGTGGGG-A..............................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............ATACAACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................AACGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.................ACAACGAAGGGCGAGGGTGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...........................GCGAGGGTGGAGTTCCTGC.......................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................AAACTTGCCCACTGA------TTGC--GTGTGGGG-A..............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAACGAAGGGCGAGGGTGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTAGAATGA-----GAAAGT----AA--------AGT..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GATACAACGAAGGGCGAGGGTGGAG..............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ACTTGCCCACTGA------TTGC--GTGTG...................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............GATACAACGAAGGGCGAG.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................GGAGTTCCTGCATATGTC................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................ACAACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............GAGATACAACGAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GATACAACGAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................CAACGAAGGGCGAGGGTGGAGTTCCT.........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAACGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............ATACAACGAAGGGCGAGGGTG.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAACGAAGGGCGAGGGTGGA...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAACTTGCCCACTGA------TTGC--GTGTGGGG-...............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GATACAACGAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAACGAAGGGCGAGGGTGG................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................CGAGGGTGGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................GGGTGGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................GGCGAGGGTGGAGTTCCTGCATAT...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACTTGCCCACTGA------TTGC--GTGTGGGG-A..............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GAGGGTGGAGTTCCTGCATATGTC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................AACGAAGGGCGAGGGTGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................CAACGAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................GGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
CTGAGGCTGGAGGAGATACAAC...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ATACAACGAAGGGCGAGGGTGGAGT.............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ATACAACGAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ATACAACGAAGGGCGAGGGTGGAGTTC...........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................ACAACGAAGGGCGAGGGTGGAGTT............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ACTTGCCCACTGA------TTGC--GTGTGGGG-AG-----------..................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GTGGAGTTCCTGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAACGAAGGGCGAGGGTGGAGTTCC..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................TACAACGAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AATTAAACAGTTGACT---CCAAGGGAAAA................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................ACAACGAAGGGCGAGGGTGGAG..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................AACTTGCCCACTGA------TTGC--GTGTGGGG-...............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............ATACAACGAAGGGCGAGGGTGGAGTTCCT.........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CTGAGGCCGGAGGTGATACGACAAAGGGCGAGGGCGGTGTCCCTGCATACGTAAGTG--GTC---AAACTCC-------------CCCGT--TTTTTT----AGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGATT---CCAAGGGAAAACTTGCTAACTGA------ATGG--GAGTGAAG-AG----------GTTTGTTTT--CCCCTCT-AGCTC-TTCAGCATTCA-------GCCTTGGCATGTTTGCTA------------TGCTGATTTGTTCGGCAATCAAAAGGGA-----AGAAAG----AA--------ATTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGAGGCTGGAGGCGATACGACAAAGGGCGAGGGCGGAGTTCCTGCATACGTAAGTG--GTC---AAACTCT-------------CCT----TTTTTC----CGTCCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACC--ACCAGGGGAAAACTTGCCAACTGA------TTGT--GGGGCAAG-AG----------GTTTGTT-----------------------------------------GGCATGTTTGCTC------------CGGTGATTTGTTCGGCAATCAAAAGGGA------GAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGAGGCTGGAGGCGATACGACAAAAGGCGAGGGCGGAGTTCCTGCATATGTAAGTG--GTC---AAGTTCT-------------CCCTTTTTTTTCT----AGTCCCTTCACTTTTTGTCG-----------------------------------GTTGGCAGTCAATTAAACAGTTGATTCTCTCAGGGGAAAACTTGCCAACTGA------TTGTGTGAGTGAAG-AG----------TTTTGTTTTTTGCCCTTT-AGTTG-TCCAGCATTCA-------GCCTTGGCATGTTTGCCT------------TGGTGATTTGTTCGGCAATCAAAAGGGT-----AAAAGT----AA--------AGTGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGAGGCCGGAGGTGACACGACAAAGGGCGAGGGCGGTGTTCCTGCATATGTAAGTG--GTC---AGACTCT-------------CCCTT--TTTTTC----AGTCCCTTCAGTTTTTGTCG-----------------------------------GTTGGCGCTCAATTAAACAGTTGACT---CCAAGGGAAAACTTGCTAACTGA------TTGT--GCCTGAAG-AG----------GTTTGTTTT--CCACTTA-AGTTT-CCCAAAA--------------------TGTTTGCTT------------TGATGATTTGTTCGGCAATCAAAGAGGA-----TGAAGT----AA--------ATTGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTGAGGCCGGAGGTGATACGACAAAAGGCGAGGGCGGTACTCCTGCATATGTAAGTG--GTC---AAACGCT-------------CCCTT--T--TTT-TCCACTTCTTTCACTTTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCCAGGGAAAACTTGCTGACTGA------TTGT--GACTGAAG-AG----------GTTTGTTTT--CCTCTTT-AGTTT-CCCAGGA--------------------TGTTTGCTT------------TGCTGATTTGTTCTGCAATCAAAAGGGA-----AAAAGT----AG--------AGAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGAGGCCGGAGGAGATACTACCAAAGGAGAAGGCGGTGTTCCTGCATATGTATGTG--GTC---GAAATCC-------------CTC----T-TTTT----AGT-----CATTTTTTGTCG-----------------------------------GTGCACACTCAATTAAACAGTTGACT---CTGAGGGA-AACTTGCCAACTGA------TTGG--AAGAGAAGCAG-----------TTGGTTGT----------------------ATCTAGCATTCCCACTTGCCGTGTTTGCAT------------TGGCGATTTGTTGGGCAGCCAGGAGGAA------AAAGA----AA--------AGTGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGAAGCTGGAGGAGATACGACCCAGGGAGCTGGCGGTGTTCCTGCATTCGTAAGTG--GTCCTTGGACTTTTTC-------TACTT-----TTTTTT----AGTTTATTTCCATTTTGTCG-----------------------------------GTTGGCACTCAATTAAACAGTTGACT---CCGTAGGAAACTTTGCCAACTGA------TTGT--GAGGGAAG-GG-----------TGGGCTAC--C-CCTTTTGGTTTCCCCAGGAT----------GTTCTGTCCTGTTTGCTT------------AGGTGATTCGTTGGACAATCAAAAAGAA------TTAGT----AA--------AGAGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTGAGGCAGGAGGAGATACCACCACAGGAGCCGGTGGTGTTCCTGCATTCGTAAGTG--TCTCT-GAACTGTCCCTGAACTCTGACCC----T-TGTT----TGCTCATTCACTTTTTGCCT-----------------------------------GCTAGCACTCAATTAAGCAGTTGATT---GCAAAGAAAAACTTTTCCAGAGAAGGGTTTTCC--GAGAGGAC-TG-----------TTTGCTTC--G-CC----ATTTT-CCCA---------------------------------------------TGTGATTTATCCTTAAATCAAAAAGAATCTGAGAAGAG----AA--------AGTAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............GATACCACCACAGGAGCCGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	3	0	0	4	0
..............GATACCACCACAGGAGCCGGTGGT...............................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0
..............GATACCACCACAGGAGCCGGTGGC...............................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
..............GATACCACCACAGGAGCC.....................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	1	0	0
............GAGATACCACCACAGGAGCCGGT..................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1
...................................GGTGTTCCTGCATTCGTCG...............................................................................................................................................................................................................................................................................................................................	19	2	1.50	3	0	0	2	0	1	0
..............GATACCACCACAGGAGCCGGTGGG...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........AGGAGATACCACCACAGGA........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................CC--GAGAGGAC-TG-----------TTTGCTTC--G-C.....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................CTTTTCCAGAGAAGGGTTTTCC--........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................GGAGCCGGTGGTGTTCCTGCATTCGTC................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................TACCACCACAGGAGCCGGT..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........GGAGGAGATACCACCACAGGAGCC.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.............................GCCGGTGGTGTTCCTGCATTCGTC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............GATACCACCACAGGAGCCGGTG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................................GGTGGTGTTCCTGCATTCGTC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............GATACCACCACAGGAGCCG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........AGGAGATACCACCACAGGAGCC.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............ATACCACCACAGGAGCCGGTG.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............AGATACCACCACAGGAGCCGGC..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................CAAAGAAAAACTTTTCCAGAGAAGGGT...............................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

CTGAGGCAGGAGGAGATACCACCACAGGAGCGGGTGGTGTGCCAGCATTCGTAAGTG--TCCCT-GAACTGCTCCTGAACTCTGACCC----T-TGTT----TGCTCATTCACTTTTTGCCT-----------------------------------GTTGGCACTCAATTAAGCAGTTGATT---GCAAAGAAAAACTTCCCAAGTG------------------GGG-GG-----------TT--------------------T-CCCAG----------------------TTTTTGCTTTACCACTTTCCCATGTGATTCATTCTTAAATCAAAAGGAATCTGTAAAGAG----AA--------AGGAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGAGGCTGGCGGTGATACCACCAAGGGCGAGGGCGGCACTCCGGCTTATGTAAGTT----------------------------CTT----C-TTTTTGTTGTTTCTTTCG----GAATTA-----------------------------------AT-----TTCAATTAAACGGAGGA------------GAG--------------------G------------C--TGAGTGCGTAATTTACCTT--T-CTCCT-CGCTC-TCC---------------TCTCCGTCATGTTTGCTT------------TGTTAATGTGTTGAGCAATCAAAGAGAG-----AGCATTAGAGAAGGGGAGCCTGTGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............GATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	21	1	24.00	24	0	21	0	0	2	0	1	0	0	0
............GTGATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	3	2	0	0	0	0	0	0	0
.............TGATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............GATACCACCAAGGGCGAGGGCGG................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............ATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........GGTGATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..................CCACCAAGGGCGAGGGCGG................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............GATACCACCAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................ACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GCGGCACTCCGGCTTATGTC................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................GGCGAGGGCGGCACTCCGGCTTATGTC................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................GGCGAGGGCGGCACTCCGGC.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GATACCACCAAGGGCGAGGGCG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................TACCACCAAGGGCGAGGGCGGCA..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....GGCTGGCGGTGATACCACCAAGGGC........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GGGCGAGGGCGGCACTCCGGC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GATACCACCAAGGGCGAGGG...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................GGCACTCCGGCTTATGTCG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGAGGCTGGCGGTGATACCACCAAGGGCGAGGGCGGCACTCCGGCTTATGTAAGTT----------------------------CTT----C-TTTTTGTTGTTTCTTTC----GGAGTTA-----------------------------------AT-----TTCAATTAAACGGAGGA------------GAG--------------------G------------C--TGAGTGCGTAATTTACATT--T-CTCCT-CGCTC-TCC---------------TCTCCGTCATGTTTGCTT------------TGTTAATGTGTTGAGCAATCAAAGAGAG-----AGCATTAGAGGA--------TGTGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............GATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	1	1	0	0	2
...................................GGCACTCCGGCTTATGTCG...............................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0
..................CCACCAAGGGCGAGGGCGGCACTCC..........................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..............GATACCACCAAGGGCGAGGGCGG................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............GTGATACCACCAAGGGCGAG.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.......TGGCGGTGATACCACCAAGGGC........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............GATACCACCAAGGGCGAG.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................AGGGCGAGGGCGGCACTCCGGCTT.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....GCTGGCGGTGATACCACCAAGGGCGA......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........GCGGTGATACCACCAAGGGC........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........GGTGATACCACCAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................TTAAACGGAGGA------------GAG--------------------G------------C--TGAGTGC......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................CAAGGGCGAGGGCGGCACTCCGGC.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droWil2

CAGAGGCTGGTGGTGATACAACCAAGGGCGAGGGTGGCACTCCAGCATATGTAAGTT--GCC------------------------------T-TTAT----TTTCCTTTCATTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............ATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	0	1	10	1	0
...............ATACAACCAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	1	0	5	0
..............GATACAACCAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	4	0	0
..............GATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	1	2	0	1
............GTGATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	4	0	0
...............ATACAACCAAGGGCGAGGGTGGC...............................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	3	0	0
.................ACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	1	2	0	0
................TACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
...........GGTGATACAACCAAGGGCGAGG....................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
.........GTGGTGATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
.................................GTGGCACTCCAGCATATGTC................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
.......................AAGGGCGAGGGTGGCACTCCAG........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........................GGGCGAGGGTGGCACTCCAGCATAT...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...........................GCGAGGGTGGCACTCCAGCATATGT.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................GGCACTCCAGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............GATACAACCAAGGGCGAGGG...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................GGCGAGGGTGGCACTCCAGCATAT...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.......................AAGGGCGAGGGTGGCACTCCAGCA......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..............GATACAACCAAGGGCGAGGGTGGC...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......................AAGGGCGAGGGTGGCACTCCAGC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........GGTGGTGATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...........GGTGATACAACCAAGGGCGAGGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...............ATACAACCAAGGGCGAGGGTGG................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................ACAACCAAGGGCGAGGGTG.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......CTGGTGGTGATACAACCAAGGGCG.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..............................AGGGTGGCACTCCAGCATAT...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......................AAGGGCGAGGGTGGCACTCCAGCATAT...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................TGGCACTCCAGCATATGTCG...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

CCGAAGCGGGCGGTGATACGACGAAGGGCGAGGGCGGTGTGCCTGCATTTGTAAGTC--TCTTT-GAAATTT-------------CTCTTT-TCATAT----AGTTTTCAAACTTTACAACTTTCTGCGTGTTTTGGCTGCAGCGCGTACACGTTTTGGTCGCACTTAATTAAACATTTTGCA---CAATGGGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................CTGCATTTGTAAGTC--TCTTT-GAA.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............GATACGACGAAGGGCGAGGGC..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................TGCGTGTTTTGGCTGCAGCGC...................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGGTGTGCCTGCATTTGTAA...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........GGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATACGACGAAGGGCGAGGGCGG................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGGTGATACGACGAAGGGC........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

CTGAGGCGGGCGGCGATACGACCAAGGGCGAGGGCGGTGTGCCCGCATTCGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................CAAGGGCGAGGGCGGTGTGCCCGC.......................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0
......CGGGCGGCGATACGACCAAG...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......................CAAGGGCGAGGGCGGTGTGCCCGCATTC...................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...............ATACGACCAAGGGCGAGGGCG.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................AAGGGCGAGGGCGGTGTGCCCGC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........GGCGATACGACCAAGGGC........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............GATACGACCAAGGGCGAGGGCG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droGri2

CTGAGGCTGGCGGCGATACGACAAAGGGCGAGGGCGGTGTTCCCGCATACGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_29614

3r:26314697-26314846 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.3	-36.2	-36.2