dsi_29602

exon [3r_4626563_4626711_+]; exon [3r_4626766_4626945_+]; CDS [3r_4626563_4626711_+]; CDS [3r_4626766_4626945_+]

Sense Strand Reads

Anti-sense strand reads

##################################################------------------------------------------------------################################################## ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAGTTCTTATTATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCAATGGGGACATCGTGGA ************************************************((((((.((((((((((.((((.......)))).))))))))))..))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR902009 testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	O001 Testis	O002 Head	SRR553485 Chicharo_3 day-old ovaries
.................................................................................TTATTGGTTCAAATCGCTCGCAG..................................................	23	0	1	54.00	54	26	20	0	3	2	2	0	0	1
.................................................................................TTATTGGTTCAAATCGCTCGC....................................................	21	0	1	5.00	5	5	0	0	0	0	0	0	0	0
...................................................................................ATTGGTTCAAATCGCTCGCAGT.................................................	22	1	1	4.00	4	2	1	0	0	0	1	0	0	0
.................................................................................TTATTGGTTCAAATCGCTCGCA...................................................	22	0	1	3.00	3	0	2	0	1	0	0	0	0	0
...................................................................................ATTGGTTCAAATCGCTCGCAG..................................................	21	0	1	3.00	3	0	0	3	0	0	0	0	0	0
.................................................................................TTATTGGTTCAAATCGCTCGCAGT.................................................	24	1	1	2.00	2	1	1	0	0	0	0	0	0	0
...................................................................................ATTGGTTCAAATCGCTCGC....................................................	19	0	1	2.00	2	0	0	2	0	0	0	0	0	0
..................................................................................TATTGGTTCAAATCGCTCGCAG..................................................	22	0	1	2.00	2	0	0	0	1	0	0	0	1	0
...................................................................................ATTGGTTCAAATCGCTCGCA...................................................	20	0	1	2.00	2	0	0	2	0	0	0	0	0	0
...................................................................................ATTGGTTCAAATCGCTCGT....................................................	19	1	1	2.00	2	0	0	2	0	0	0	0	0	0
...................................................................................ATTGGTTCAAATCGCTCGCAGTT................................................	23	2	1	2.00	2	0	0	2	0	0	0	0	0	0
.................................................................................TTATTGGTTCAAATCGCTCGCG...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..................................................................................TATTGGTTCAAATCGCTCGCAGT.................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0
.................................................................................TTATTGGTTCAAATCGCTCGTAG..................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0	0
.........ACCACTTCCGCAACATAA...............................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0
...................................................................................ATTGGTTCAAATCGCTCGCAGA.................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim2	3r:4626662-4626815 +	dsi_29602	ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAG---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCAATGGGGACATCGTGGA
droSec2	scaffold_27:54782-54935 +	dse_146	ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAG---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCAATGGGGACATCGTGGA
dm3	chr3R:16678977-16679130 -	dme-mir-1011	ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAG---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAGAACAGCAATGGGGTCATCGTGGA
droEre2	scaffold_4770:4975793-4975946 +	der_129	ACATCGAGCACCACTTTCGAAACATAACCATGGACATTCTGACCGTCCACGTGAGTTTTTGAGCCATGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCCATGGAGTCATAGTGGA
droYak3	3R:5477768-5477921 -	dya_102	ACATCGAGCACCACTTTCGCAACATAACCATGGACATTCTGACCGTGCATGTGAGTTTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTCACCAAAAACAGCCATGGAGTCATCGTTGA
droEug1	scf7180000409542:497607-497760 +		ACATTGAGCACCATTTTCGCAACATCACCATGGACATTGTTACCATACATGTGAGTCTTTGAGCCAGGAATATAA---------TTAT------TAT-TATTGGTTCGAATTGCTCGTAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCCATGGCGTCATCGTAAA
droBia1	scf7180000302402:9517609-9517762 -		ACATAGAGCACCACTTTCGCAACATCACCTTGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGTAGAACCCTCCTTGGCAAATCCTCACCAAGAACAGCAATGGGGCCATCGTGAA
droTak1	scf7180000415245:28076-28229 +		ACATAGAGCACCACTTCCGCAACATCACCATGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TCCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAGTCCTCACCAAAAACCGGCATGGGGTGATCGTAAA
droEle1	scf7180000491080:558855-559014 -		ACGTCGAGCACCATTTTCGCAACATCACCATGGACATTCTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAATTAACATA---AT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCACCCTGGCAAATTCTAACCAAGAACAGCCATGGAGTCATTGTGGA
droRho1	scf7180000779659:261298-261451 -		ACATCGAGCACCACTTCCGCAACATCACCATGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCACCCTGGCAAATCCTCACCAAGAACAGCCATGGAGTTATAGTGAA
droFic1	scf7180000453930:97497-97650 +		ACATCGATCACCATTTCCGCAACATAACCATGGATATTGTTACTGCACACGTGAGTCTTTGAGCCAGGAATAACA---------TCCT------TAT-TATTGGTTCGAATCTCTCGTAGAATCCACCGTGGCAAATTCTCAAAAAGAACAGCCATGGGGTCATCGTCGA
droKik1	scf7180000302307:69533-69686 +		ACATCGAGCACCACTTTCGCAACATCACCATGGACGTGCTAACCGTGCATGTGAGTCTTTGAGCCAGGAATATAA---------TCCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCGCCCTGGCAAATCCTGACCAAAAACCAGCACGGGGTGATCGTCGA
droAna3	scaffold_13340:7952035-7952189 -	dan_318	ATATCGACCACCACTTCCGCAACATCACAATGGATGTGGTGACGGTGCATGTGAGTCTTTGAACCAGGAATATAA---------TTTG------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAATTCTTACCAAAGACAGCCATGGAGTTATTTTGGA
droBip1	scf7180000396708:893964-894118 +		ATATCGAGCACCACTTCCGCAACATCACAATGGACGTGGTGACTGTTCATGTGAGTCTTTGAGCCAGGAATATAA---------TTTT------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAATCCTAACCAAAAATAGTCATGGGGTCATTGTGGA
dp5	2:12756628-12756792 +		ACATCGCGCAGCACTTCCGTAATATCACCATGGACATTGTGACGATGCATGTGAGATTTTGAATCTAATATATAA----TATAATCCGTACGTGTAT-ATATGGTTCAAATTACTCGTAGAACCCTCCCTGGCAAATACTGACCAAGAACAGCGACGGAGTCATTGTCGA
droPer2	scaffold_0:7702077-7702240 -		ACATCGCGCAGCACTTCCGTAATATCACCATGGACATTGTGACGATGCATGTGAGATTTTGAATCTAATATATAA----TATAAT-CTTACATGTAT-ATATGGTTCAAATAACTCGTAGAATCCTCCCTGGCAAATACTGACCAAGAACAGCCACGGAGTCATTGTCGA
droWil2	scf2_1100000004921:2184431-2184587 +	dwi_97	ACATTGAGCATCATTTTCGGAACATCACCATGGATATTCTGACCGTACATGTGAGTCTTTGAATCAGGAATATAT----TA---TCAT------TATATATTGGTTCGAAATGCTCGTAGAATCCACCTTGGCAAATCCTGACCAAAAATAGTCTGGGTCACATAGTCGA
droVir3	scaffold_13047:12031296-12031458 +	dvi_143	ACATAGATCAGCATTTTCGCAACATCACCATGGATATTGTCACGGTGCATGTGAGTCATTGAACCAGGAATATATGT-ATGTAATTCT------TATATATTGGTTCAAATTTCTCGCAGAATCCGCCCTGGCAAATATTGACTAAAGACAGCCGCGGTGCCATCGTGGA
droMoj3	scaffold_6540:29750554-29750711 -	dmo_337	ATATTGATCACCATTTTCGTAACATCACCATGGACATTGTGACAGTGCATGTGAGTCTTTGAGCCAGGAATATAT----GTTC-ATCT------TAT-TATTGGTTCAAATCTCTCGTAGAATCCTCCCTGGCAAATCTTAACCAAGGATAGTCGCGGCGTCATCGTCGA
droGri2	scaffold_14830:1201824-1201978 +		ATATCGAGCATCATTTTCGGAATATCACCATGGATATTGTCACTGAGCATGTGAGTCTTTGAGCCAGGAATATAA---------TTGT------TATATATTGGTTCAAACAACTCGTAGAATCCGCCCTGGCAAATTCTCACCAAGGACTCTCGCGGCGTCATTGTCGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAG---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCAATGGGGACATCGTGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis
................................................................................................T-TATTGGTTCAAATCGCTCGCAG..................................................	23	1	54.00	54	26	0	20	0	0	0	1	0	2	2	0	3	0	0
................................................................................................T-TATTGGTTCAAATCGCTCGC....................................................	21	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................T-TATTGGTTCAAATCGCTCGCA...................................................	22	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................ATTGGTTCAAATCGCTCGCAG..................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3
...................................................................................................ATTGGTTCAAATCGCTCGC....................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................TATTGGTTCAAATCGCTCGCAG..................................................	22	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	1	0	0
...................................................................................................ATTGGTTCAAATCGCTCGCA...................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.........ACCACTTCCGCAACATAA...............................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................ATTGGTTCAAATCGCTCGCAGA.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ACATCGAGCACCACTTCCGCAACATAACCATGGACATTCTGACCGTGCACGTGAGTTTTTGAGCCAGGAATATAG---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCAATGGGGACATCGTGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................T-TATTGGTTCAAATCGCTCGCAG..................................................	23	1	14.00	14	0	0	9	5
................................................................................................T-TATTGGTTCAAATCGCTCGCA...................................................	22	1	6.00	6	0	1	2	3
..................................................GTGAGTTTTTGAGCCAGGAATA..................................................................................................	22	1	1.00	1	0	0	1	0

droEre2

ACATCGAGCACCACTTTCGAAACATAACCATGGACATTCTGACCGTCCACGTGAGTTTTTGAGCCATGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCCATGGAGTCATAGTGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head
................................................................................................T-TATTGGTTCAAATCGCTCGCAG..................................................	23	1	14.00	14	5	0	1	0	0	8
................................................................................................T-TATTGGTTCAAATCGCTCGCA...................................................	22	1	6.00	6	1	0	0	0	2	3
...................................................................................................ATTGGTTCAAATCGCTCGC....................................................	19	1	3.00	3	0	0	0	0	0	3
...................................................................................................ATTGGTTCAAATCGCTCGCAG..................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................T-TATTGGTTCAAATCGCTCGC....................................................	21	1	1.00	1	0	0	0	0	0	1

droYak3

ACATCGAGCACCACTTTCGCAACATAACCATGGACATTCTGACCGTGCATGTGAGTTTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGCAGAATCCACCCTGGCAAATCCTCACCAAAAACAGCCATGGAGTCATCGTTGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body
................................................................................................T-TATTGGTTCAAATCGCTCGCAG..................................................	23	1	42.00	42	30	4	1	0	0	7	0
................................................................................................T-TATTGGTTCAAATCGCTCGC....................................................	21	1	9.00	9	7	0	0	0	0	0	2
................................................................................................T-TATTGGTTCAAATCGCTCGCA...................................................	22	1	6.00	6	1	1	0	0	0	3	1
...................................................................................................ATTGGTTCAAATCGCTCGCAG..................................................	21	1	3.00	3	1	0	1	0	0	0	1
................................................................................................T-TATTGGTTCAAATCGCTC......................................................	19	1	1.00	1	1	0	0	0	0	0	0

droEug1

ACATTGAGCACCATTTTCGCAACATCACCATGGACATTGTTACCATACATGTGAGTCTTTGAGCCAGGAATATAA---------TTAT------TAT-TATTGGTTCGAATTGCTCGTAGAATCCACCCTGGCAAATCCTTACCAAAAACAGCCATGGCGTCATCGTAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACATAGAGCACCACTTTCGCAACATCACCTTGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGTAGAACCCTCCTTGGCAAATCCTCACCAAGAACAGCAATGGGGCCATCGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACATAGAGCACCACTTCCGCAACATCACCATGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TCCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAGTCCTCACCAAAAACCGGCATGGGGTGATCGTAAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACGTCGAGCACCATTTTCGCAACATCACCATGGACATTCTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAATTAACATA---AT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCACCCTGGCAAATTCTAACCAAGAACAGCCATGGAGTCATTGTGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACATCGAGCACCACTTCCGCAACATCACCATGGACATTGTGACCGTGCACGTGAGTCTTTGAGCCAGGAATATAA---------TTCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCACCCTGGCAAATCCTCACCAAGAACAGCCATGGAGTTATAGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACATCGATCACCATTTCCGCAACATAACCATGGATATTGTTACTGCACACGTGAGTCTTTGAGCCAGGAATAACA---------TCCT------TAT-TATTGGTTCGAATCTCTCGTAGAATCCACCGTGGCAAATTCTCAAAAAGAACAGCCATGGGGTCATCGTCGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACATCGAGCACCACTTTCGCAACATCACCATGGACGTGCTAACCGTGCATGTGAGTCTTTGAGCCAGGAATATAA---------TCCT------TAT-TATTGGTTCAAATCGCTCGTAGAATCCGCCCTGGCAAATCCTGACCAAAAACCAGCACGGGGTGATCGTCGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATATCGACCACCACTTCCGCAACATCACAATGGATGTGGTGACGGTGCATGTGAGTCTTTGAACCAGGAATATAA---------TTTG------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAATTCTTACCAAAGACAGCCATGGAGTTATTTTGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................ATATTGGTTCAAATCGCTCGTAG..................................................	23	1	3.00	3	1	0	0	0	1	1
................................GATGTGGTGACGGTGCATGTG.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................ATATTGGTTCAAATCGCTCG.....................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................GTGAGTCTTTGAACCAGGAAT...................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

ATATCGAGCACCACTTCCGCAACATCACAATGGACGTGGTGACTGTTCATGTGAGTCTTTGAGCCAGGAATATAA---------TTTT------TATATATTGGTTCAAATCGCTCGTAGAATCCTCCCTGGCAAATCCTAACCAAAAATAGTCATGGGGTCATTGTGGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACATCGCGCAGCACTTCCGTAATATCACCATGGACATTGTGACGATGCATGTGAGATTTTGAATCTAATATATAA----TATAATCCGTACGTGTAT-ATATGGTTCAAATTACTCGTAGAACCCTCCCTGGCAAATACTGACCAAGAACAGCGACGGAGTCATTGTCGA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

ACATCGCGCAGCACTTCCGTAATATCACCATGGACATTGTGACGATGCATGTGAGATTTTGAATCTAATATATAA----TATAAT-CTTACATGTAT-ATATGGTTCAAATAACTCGTAGAATCCTCCCTGGCAAATACTGACCAAGAACAGCCACGGAGTCATTGTCGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ACATTGAGCATCATTTTCGGAACATCACCATGGATATTCTGACCGTACATGTGAGTCTTTGAATCAGGAATATAT----TA---TCAT------TATATATTGGTTCGAAATGCTCGTAGAATCCACCTTGGCAAATCCTGACCAAAAATAGTCTGGGTCACATAGTCGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................ATATTGGTTCGAAATGCTCGTAG..................................................	23	1	50.00	50	3	0	0	45	2
.................................................................................................ATATTGGTTCGAAATGCTCGTA...................................................	22	1	7.00	7	0	0	0	7	0
.................................................................................................ATATTGGTTCGAAATGCTCGT....................................................	21	1	3.00	3	3	0	0	0	0
..................................................................................................TATTGGTTCGAAATGCTCGTAG..................................................	22	1	1.00	1	0	0	0	1	0
..................................................GTGAGTCTTTGAATCAGGAATAT.................................................................................................	23	1	1.00	1	0	0	0	1	0

droVir3

ACATAGATCAGCATTTTCGCAACATCACCATGGATATTGTCACGGTGCATGTGAGTCATTGAACCAGGAATATATGT-ATGTAATTCT------TATATATTGGTTCAAATTTCTCGCAGAATCCGCCCTGGCAAATATTGACTAAAGACAGCCGCGGTGCCATCGTGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body
.................................................................................................ATATTGGTTCAAATTTCTCGC....................................................	21	1	14.00	14	0	0	3	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3
.................................................................................................ATATTGGTTCAAATTTCTCGCAG..................................................	23	1	12.00	12	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.................................................................................................ATATTGGTTCAAATTTCTCGCA...................................................	22	1	7.00	7	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.................................................................................................ATATTGGTTCAAATTTCTCG.....................................................	20	1	7.00	7	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1
..................................................................................................TATTGGTTCAAATTTCTCGCA...................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TATTGGTTCAAATTTCTCGCAG..................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TATATTGGTTCAAATTTCTCGCAG..................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TATATTGGTTCAAATTTCTCGCA...................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................GGTTCAAATTTCTCGCAG..................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TATATTGGTTCAAATTTCTCG.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

ATATTGATCACCATTTTCGTAACATCACCATGGACATTGTGACAGTGCATGTGAGTCTTTGAGCCAGGAATATAT----GTTC-ATCT------TAT-TATTGGTTCAAATCTCTCGTAGAATCCTCCCTGGCAAATCTTAACCAAGGATAGTCGCGGCGTCATCGTCGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................T-TATTGGTTCAAATCTCTCGTAG..................................................	23	1	16.00	16	6	1	0	3	6	0
................................................................................................T-TATTGGTTCAAATCTCTCGT....................................................	21	1	3.00	3	0	0	1	2	0	0
................................................................................................T-TATTGGTTCAAATCTCTCGTA...................................................	22	1	2.00	2	0	0	0	1	0	1

droGri2

ATATCGAGCATCATTTTCGGAATATCACCATGGATATTGTCACTGAGCATGTGAGTCTTTGAGCCAGGAATATAA---------TTGT------TATATATTGGTTCAAACAACTCGTAGAATCCGCCCTGGCAAATTCTCACCAAGGACTCTCGCGGCGTCATTGTCGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_29602

3r:4626712-4626765 +

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.6	-20.2