ID:

dsi_29519

 Coordinate:

2r:5139873-5139929 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5139861_5139872_+]; five_prime_UTR [2r_5139822_5139860_+]; exon [2r_5139822_5139872_+]; exon [2r_5139930_5140562_+]; CDS [2r_5139930_5140256_+]; intron [2r_5139873_5139929_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
TCACGAGTTCTCTAGTCTGACAATCTAACCAAGTCAAAATGTTCAAGATCGTAAGTATCTGAAGATCAAAGCCGGACAGTTCAATGAGTAATCCCGGATTATCCTAGCTGCTTGTCTGCGCCCTCGCCGCCCTGGTGGCCGCCAACGAGAATCCTGA
**************************************************.............(((.....((((..................))))...)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR1275487
Male larvae		 M023
head
....GAGTTCTACAGTCTGACGATC.................................................................................................................................... 21 3 2 21.50 43 27 14 1 1 0 0 0 0 0
.....AGTTCTACAGTCTGACGATC.................................................................................................................................... 20 3 2 13.50 27 18 8 0 0 1 0 0 0 0
....GAGTTCTATAGTCCGACGATC.................................................................................................................................... 21 3 1 13.00 13 7 5 1 0 0 0 0 0 0
....GAGTTCTACAGTCCGACAATC.................................................................................................................................... 21 3 11 3.82 42 6 1 19 9 6 1 0 0 0
.....AGTTCTATAGTCCGACGATC.................................................................................................................................... 20 3 3 3.67 11 7 3 1 0 0 0 0 0 0
...AGAGTTCTATAGTCCGACAATC.................................................................................................................................... 22 3 1 2.00 2 0 0 1 0 1 0 0 0 0
......GTTCTACAGTCTGACGATC.................................................................................................................................... 19 3 10 1.90 19 16 2 1 0 0 0 0 0 0
.....................................................................AGCCGGACAGCTCAATGAGTAATCC............................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...CGAGTTCTCCAGTCCGACGATC.................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...CGAGTTCTACAGTCCGACAATC.................................................................................................................................... 22 3 2 1.00 2 0 0 0 1 0 1 0 0 0
..ACGAGTTCTCTAGTCTGACA....................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....GAGTTCTATAGTCTGACGATC.................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
........TCTCTAGTCCGACGATC.................................................................................................................................... 17 2 9 0.56 5 4 1 0 0 0 0 0 0 0
....GAGTTCTAAAGTCTGACGATC.................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..ACGAGTTCTACAGTCCGACAA...................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
........TCTCTAGTCCGACGATCT................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................TGCTTGTCTGCGCACTCGCCGCCC......................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0
......GTTCTACAGTCTGACGATCT................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
....GAGTTCTCTAGTCCGACACA..................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
....GAGTTCTACAGTCTGACGAT..................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0
....GAGTTCTATAGTCCGACGAT..................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................................................................................GTAATCGCGGATTATCAT.................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0
..ACGAGTTCTACAGTCCGAC........................................................................................................................................ 19 3 13 0.23 3 3 0 0 0 0 0 0 0 0
.....AGTTCTCCAGTCCGACGATC.................................................................................................................................... 20 3 20 0.20 4 3 0 0 1 0 0 0 0 0
.....AGTTCTACAGTCCGACAATCT................................................................................................................................... 21 3 11 0.18 2 0 0 0 0 0 0 0 2 0
.......................................................TATCTGAAGATCTACGCC.................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1
..ACGAGTTCTACAGTCCGACA....................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
........................CTAACCAAGTCAACATTT................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0
......GTTCTATAGTCCGACGATC.................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0
...CGAGTTCTACAGTCCGACAAT..................................................................................................................................... 21 3 11 0.09 1 0 0 1 0 0 0 0 0 0
........TCTACAGTCTGACGATCTA.................................................................................................................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0
.............................................................AAGATCAAAGGCCGACA............................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................GCGCGCTCGCCGCCGAGGT..................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0
.............................................................................................CCGGAGTACCCTAGCT................................................ 16 2 17 0.06 1 0 0 0 0 1 0 0 0 0
...AGAGTTCTATAGTCCGACA....................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTGCTCAAGAGATCAGACTGTTAGATTGGTTCAGTTTTACAAGTTCTAGCATTCATAGACTTCTAGTTTCGGCCTGTCAAGTTACTCATTAGGGCCTAATAGGATCGACGAACAGACGCGGGAGCGGCGGGACCACCGGCGGTTGCTCTTAGGACT
**************************************************.............(((.....((((..................))))...)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M053
female body
...........................TGGTTCAGTTTTACAAGTTCTAGCAT........................................................................................................ 26 0 1 5.00 5 2 0 3 0 0 0 0 0
.......ATGAGATCAGACTGTCAGAA.................................................................................................................................. 20 3 4 2.00 8 0 8 0 0 0 0 0 0
.......................................................................GGCCTGTCGAGTTACTCAT................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
......CATGAGATCAGACTGTCAGAA.................................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0
............................GGTTCAGTTTTACAAGTTCTAGCAT........................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................AGACTTCTAGTTTCGGCCTGTCGAGT.......................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
......CGAGAGATCAGACTGTTAGATTGGT.............................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................TAGTTTCGGCCTGTCGAGTTACTCAT................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
........TGAGATCAGACTGTCAGAA.................................................................................................................................. 19 3 11 0.55 6 0 6 0 0 0 0 0 0
.........................................................................................................................GGAGCGGCTGGACCGCCGGCT............... 21 3 3 0.33 1 0 1 0 0 0 0 0 0
.....TCAAGCTATCAGACTGGTAG.................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0
.........GAGCTAAGACTGTTAGAT.................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 1 0 0 0
.........................................................................................TTAGGGCCTAAACGGAT................................................... 17 2 12 0.17 2 0 2 0 0 0 0 0 0
...........................................................................................AGGGCCTAATAGGGT................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0
.......AAGAGTTAAGACTGTTAG.................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0
.......................................................................GGTCTGACAAGTGACTCAT................................................................... 19 3 9 0.11 1 0 1 0 0 0 0 0 0
....................................................................................................TAGGATCGACGGACA.......................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0
..............CAGACTGTTTGGTTGGTTTAG.......................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 1 0
......TATGAGTTCAGACTGTTAG.................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1
.............TCAGTCTGTTAGATAGGTC............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0
........................................................TAGAATCCTAGTTTCG..................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
........................................................TAGTGTTCTAGTTTCG..................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 10:11 AM