dsi_29497

CDS [2l_6331457_6331538_+]; exon [2l_6331354_6331538_+]; intron [2l_6331539_6331971_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGCCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGTGCAAATGAGGAGGGAAATCCCACGGCCAGCTGCTTTTCGGTCACGTTCGCCGATTTGGCGGAGCTTCTGCCCTGGAATTGCATAATATTGGAGTGCAGGTGGTAGACCAGCATGATACTGTGCTCCACAAACCTGGAGAGCATCAGATTTGGACCCACAGAAAAGTGTCTATGGAAAGTGCGAGGTTATGT ********************************************************..................((...((((.(((.(((....)))...))).))))....))***********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M025 embryo	O002 Head	SRR553486 Makindu_3 day-old ovaries
...................................................................................................................................................................................................AGAGCATCAGATTTGGAC.....................................	18	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........CGCCAAAATGTTGCCTACACGCCCGTGCGC..................................................................................................................................................................................................................	30	0	1	2.00	2	0	0	0	1	0	0	0	0	0	1
................................................................................................................................................................................................................................TGTCTATGGAAAGTGCGAGGT.....	21	0	1	2.00	2	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................TTGGAGTGCAGATGGTAGAC....................................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............CAAAATGTTGCCTACACGCCCGTGCGCTT................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................ATGTTGCCTACACGCCCGTGCGCTTCTG.............................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GCCTACACGCCCGTGCGCT.................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........................................................TGCAAATGAGGAGGGAAATCCCA.........................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................TTTTCGGTCACGTTCGCCGATTTGG.....................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................AATGTTGCCTACACGCCC........................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................CTGGAGAGCATCGGATTTGGA......................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................GCCTACACGCCCGTGCGCTT................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................AATTGCATAATATTGGAGTGC...............................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................TTGGAGTGCAGATGGTAGACCAAA................................................................................	24	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................TGCCTACACGCCCGTGCGCTT................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGTGCAGATGGTAGACCGGCTT..............................................................................	22	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................CGCCGATTTGGCGGAGCTTCTGCCCTGG....................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................GTGCAAATGAGGAGG..................................................................................................................................................................................	15	0	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.........ACGCCAAAATGTTGCGTA...............................................................................................................................................................................................................................	18	1	2	0.50	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TGAGTGCCGGTAGTAGAC....................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........CGCCCAAATGTTCCCT................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0	0	0	0

ACGGCGGCGTGCGGTTTTACAACGGATGTGCGGGCACGCGAAGACGTTTTCATTCACCACGTTTACTCCTCCCTTTAGGGTGCCGGTCGACGAAAAGCCAGTGCAAGCGGCTAAACCGCCTCGAAGACGGGACCTTAACGTATTATAACCTCACGTCCACCATCTGGTCGTACTATGACACGAGGTGTTTGGACCTCTCGTAGTCTAAACCTGGGTGTCTTTTCACAGATACCTTTCACGCTCCAATACA ***********************************************************************************************************************************..................((...((((.(((.(((....)))...))).))))....))********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
...................................................................................................................................................................................................................................GATACCTTTCACGCTCCAATA..	21	0	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................AGTCAAAACCTGGGTGTCTTT............................	21	1	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................TCGTAGTCAAAACCTGGGTGT................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................AGTGCAAGCGGCTAAACCGCCT.................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................GACCTCTCGTAGTCTAAACCT......................................	21	0	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................CGTACTATGACACGAGGTGTT.............................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
.......................GGATGTGCGGGCACGCGAAGACGTTT.........................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................GCAAGCCTGTAAACCGCCTC................................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0	0
ACGGCGGGGTGTGGTTTTTCA.....................................................................................................................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................TCTTTTCTCAGATACGT................	17	2	19	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:6331489-6331738 +	dsi_29497	TGCCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGAGGAGGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGCTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGT-AGACCAGCATGATACTGTG-----CTCCAC----------------------------AAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT
droSec2	scaffold_3:2097540-2097789 +		TGCCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGAGGAGGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGCTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGT-AGACCAGCATGGCACTGTG-----CTCCAC----------------------------AAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT
dm3	chr2L:6557935-6558184 +		TGCCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGCGGAGGGAAGTCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGTTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGA-AGACCAGCATGGCACTGTG-----CTCCAC----------------------------TAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TTGAAAGTGCGAGGTTATGT
droEre2	scaffold_4929:15465831-15466080 +		TGCCGCCGCACGCCAGAATGTAACCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAACCGAGAAGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGGTTGTTGCCTGG--AATTGCATAATATTGGAGTGTAGGTGGT-AAAACACCAGGGCACTGTG-----CTCCAC----------------------------TCTCCTGGAAA-----GCT----GCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGAAGAGTGCGAGGTTATGT
droYak3	2L:6358114-6358363 -		TGCTGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAAGCAGGGGGGAAATCCCACTGCCAGCT-------GCTTT----TCGGTCACGTTCGTCG--------------AC-TT----------------------------------GGCGGAGGTTCTGCTCTGG--AATTGCATAATATTGGCGTGCTGGTGAT-AGAACACCAAGGCACTGTG-----CTCCAC----------------------------ACTCCTGGAAA-----GCT----GCAG-GCTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT
droEug1	scf7180000409463:1991337-1991585 +		TGCCGCCGCACGCCAAAATGTTACCTACACACCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-AAAACTAG-GGGTAAATCCCACGGATAGCT-------GCTTC----TCGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGATTTGCAGGGCTGA--AATTGCATAATTGAGGAGTGCAGGAGGG-AAAACAACTAAGAGCTGGA-----CTGCTC----------------------------TCACCTAGGAA-----GCT----GCAG-TTTTGGACCCCG--AAAAAAGTGCCAT---TGGAAAGTGCGAGGTTATGT
droBia1	scf7180000302422:2907808-2908061 -		TGCCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAAGCAGCAGGCAAATCCCACGGACAGCT-------GCTCCC---CTGGTCACGTTCGCCG--------------AAAGT----------------------------------GGCGGAGGTTCTGGCCTGGATAATTGCATAATTATGAACACCAGATGGG-TCAACACCAAGTCGCAGCA-----GTAGTT----------------------------AACCCCGGGAA-----GCT----GCAG-TTTTGGGCCCCC--A-AAAAGTGCCCAT--TGGAAAGTGCGAGGTTATGT
droTak1	scf7180000415858:127235-127495 -		TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGATG-AAAGGCTGAGGGGAAATCCCACGGACAGCT-------GCTTAC---CTGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGAGATTCTGGGCTGGATAATTGCATAATTGCGGAGAGCAGGTC----------------------------CC-ACCTGCACCTGTTCAGATGGAGCGAACTTAGTCCCTGGGAA-----ACT----GCAG-CTTTGGGCCCCCCGAGAAAAGTGCCTT---TGGAAAGTGCGAGGTTATGT
droEle1	scf7180000490970:389246-389495 -		TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-CAAACCTAGAGGGAAATCCCACGGATAGCT-------GCTTT----TCGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGACATTCTGGACTGG--AATTGCATAACCATGGAGCGCTGGTGGCTAAAACACCAAGGCGTTGCA-----CCC-TG----------------------------TTGCCTGGAAA-----GCT----GCAG-TTTTGGGTCCCG--AGAAAAGTGCCAC---TCGAAAGTGCGAGGTTATGT
droRho1	scf7180000779524:271655-271902 +		TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-CAAACCAG-AGGGAAATCCCACGGACAGCT-------GCTTT----TCGGTCACGTTCGCCA--------------AA-AT----------------------------------TGTCGCGAATCTGTGCTGG--AATTGCATAATTATGGATGGCTACTGGG-GAGACACCTAGTCGTTGCA-----ATC-TT----------------------------TTCCCGGGGAA-----GCT----GCCG-TTTTCGTTCCCG--AGAAAAGTGCCAT---CGGAAAGTGCGAGGTTATGT
droFic1	scf7180000453815:508299-508549 -		TACCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-ATAATCAGGAGGGAAATCCCACGGAGCGCT-------GAATT----TCCGTCACGTTCGCCA--------------AAATT----------------------------------GGCGGAGCTTCTTGCCTGG--AATTGCATAATTATGGAGTCAGTGTATG-AAATCACTATGTCATCACA-----CTAGTC----------------------------TCGCCTTGGAA-----GCT----GCAG-TTCTGGACCCCG--AGAAAAGTGCCTT---TGGAAAGTGCGAGGTTATGT
droKik1	scf7180000302684:448343-448613 +		TGCCGCCGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGTG-CCAAAACCAGGAGGGAAATCCCGCAGAT----GAAGC--AGTTTGCCATCCGTCACGTTCACCA-CCGTTGGCTGGCCAA-TT----------------------------------GGCGGCGACCGAAGGCCGG--AATTGCATAATTATGGAGTGGCTGCAGT-CAAATACCAAT----CCTC-----CTGCAC------G-------------GGG-----ACATCTGGAAA-----ACT----GCAA-T-TTGGGCGCAG--GAAAAAGTCGATGTTGTGGAGAGTGCGAGGTTATGT
droAna3	scaffold_12916:13514526-13514787 -		TGCCGCTGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGGA-G-AAAATCAGGC-GGAAAACTCCCCGCCAGCTGAGAT--GCTTCG---CCCGTCACGTTTGCCT-TTTCCGGACGG--GA-TG----------------------------------GGAGGCGATTTGCTGCTGG--AATTGCATAATACCAAAGTGCATTGAGCTCAAATAAGAAC----CCTACCATGGCT-GC----------------------------TTGCATGGAAA-----GAT----GCAG-TTTTCGCGG-AT--GGAAAAGTGC-------GGAGAGTGCGAGGTTATGT
droBip1	scf7180000396535:490602-490863 -		TGCCGCCGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGGA-G-AAATTCAGGT-GGAAAACTCTCCGCCAGCTGAGAT--GCTTTT---CCCGTCACGTTCGCCT-TTTCCGCACGG--GA-TG----------------------------------GGAGGCGATTCGCTGCTGG--AATTGCATAATAGCCGAGTGCATCGAGCTCAAATAAGAAC----CCTACCATGGCT-GC----------------------------TTGCATGGAAA-----GAT----GCAG-TTTTCGCGA-AT--GGAAAAGTGC-------GGAGAGTGCGAGGTTATGT
dp5	4_group1:1626241-1626515 +		TGCCGCTGCACGCCAAAATGTTACATACGCGCCCGTGCGTTTTTGCAAAAGTAAGTGCA-G-AAA-TCAA-ACCGAAATCCC--------CT-------GCGCT----GCCGTCACGTCCGCCCGTCGTGGT--GT-------GTAGA------TTTTGGTGTGAAGGCACTTCTGCGTCCGAGTTTCATGGCTAG--GATTGCATAATATGACAACCAATGCAATGCCAGAACACAG----TCTGCGGCAGCC-CC----------------------------CTGCATCTGGA-----GCA----GCAG-TTTTTGGCAATT--GAAAATGCGCCTG---CTTCGGTGGGGAGGTTATGT
droPer2	scaffold_5:3579778-3580052 -		TGCCGCTGCACGCCAAAATGTTACATACGCGCCCGTGCGTTTTTGCAAAAGTAAGTGCA-G-AAA-TCAA-ACCGAAATCCC--------CT-------GCGCT----GCCGTCACGTCCGCCCGTCGTGGT--GT-------GTAGA------TTTTGGTGTGAAGGCACTTCTGCGTCCGAGTTTCATGGCTAG--GATTGCATAATATGACAACCAATGCAATGCCAGAACACAG----TCTGCGGCAGCC-CC----------------------------CTGCATCTGGA-----GCA----GCAG-TTTTTGGCAATT--GAAAATGCGCCTG---CTTCGGTGGGGAGGTTATGT
droWil2	scf2_1100000004521:6446122-6446265 +		TGCTGCCGCTCAACACAATGTTAAATACACGCCCGTGCGTTTTTGCAAAAGTAAGTCAA----------------AAATCGCTTGCCTCGCT-----TGTCGTT----GTCGTCACGTCCACCAGTAGC----AAAATCA-TT----------------------------------C-----GCACCACCACAAG--GATTGCATAATAGAGGA----------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:1129740-1129997 -		TGCCGCCGCACGCCAAAATGTGACATACCACTCCGTTCGCACCTGCAAAAGTAAGTAGG-A-AT--TGCGTACCAAAACG-----G--CGCA-------ACTTC----GCCGTCACGTCCGCCT-TGTTCGCGCGT--G--TGGCAGACAATCCCTTTGCTGCCAAGGCGCCTC-------------CATAAGCCG--TATTACATAATGCG-GACACAAA---AT-ATATCAGGCCTGC----------------------------------------------TGTGTGTGCAACAAAGATTTAGCCAGATTTTAGATGGT----GAAAAGTGTG--------CGGGTGGGAGGTTATGT
droMoj3	scaffold_6500:27890242-27890307 -		TGCTGCCGCACGCCAAAATGTGACATACAACTCCGTGCGTACCTGCAAAAGTAAGTAAT-A-AAAACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15126:7341255-7341368 +		TGTCGCCGCACGCCAAAATGTAACATACCACTCCGTGCGTACCTGCAAAAGTAAGTACC-A-AA--GAAG-CGAGAAAACTAA------ACG-------GCGCA----ATCGTCACGTCCACCG--------------CC-TC----------------------------------AGTGTGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGCCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGAGGAGGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGCTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGT-AGACCAGCATGATACTGTG-----CTCCAC----------------------------AAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................AGA-----GCA----TCAG-ATTTGGAC..........................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGCCAAAATGTTGCCTACACGCCCGTGCGC...................................................................................................................................................................................................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TGTCTA---TGGAAAGTGCGAGGT.....	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.............CAAAATGTTGCCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGTTGCCTACACGCCCGTGCGCTTCTG..............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCCTACACGCCCGTGCGCT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................T-G-CAAATGAGGAGGGAAATCCCA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GG........................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................AATGTTGCCTACACGCCC.........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AATTGCATAATATTGGAGTGC................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................TGCCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CGCCG--------------AT-TT----------------------------------GGCGGAGCTTCTGCCCTGG--.....................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GT-G-CAAATGAGGAGG.................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGCCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGAGGAGGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGCTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGT-AGACCAGCATGGCACTGTG-----CTCCAC----------------------------AAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................ACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.........................TACACGCCCGTGCGCTTCTG..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........................CTACACGCCCGTGCGCTTC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AAGTGTCTA---TGGAAAGTG...........	18	1	1.00	1	0	0	1	0
..........................................................T-G-CAAATGAGGAGGGAAATCCCA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.........................TACACGCCCGTGCGCTTCTGCA............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...............................................AAAGTAAGTGGT-G-CAAATGAGGAGGGAA..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................TTGGAGTGCAGGTGGT-AGACC...................................................................................................................................	21	1	1.00	1	0	0	1	0

dm3

TGCCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-CAAATGCGGAGGGAAGTCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGTTTCTGCCCTGG--AATTGCATAATATTGGAGTGCAGGTGGA-AGACCAGCATGGCACTGTG-----CTCCAC----------------------------TAACCTGGAGA-----GCA----TCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TTGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......GCACGCCAGAATGTTGCCT.................................................................................................................................................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCCCGTGCGCTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCCGCACGCCAGAATGTTGCC..................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCCCGTGCGCTTCTGCA............................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCACGCCAGAATGTTGCC..................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCCCGTGCGCTTCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................CCCGTGCGCTTCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CGTGCGCTTCTGCAAAAGACT.....................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CGTGCGCTTCTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCCGCCGCACGCCAGAATGTAACCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAACCGAGAAGGAAATCCCACGGCCAGCT-------GCTTT----TCGGTCACGTTCGCCG--------------AT-TT----------------------------------GGCGGAGGTTGTTGCCTGG--AATTGCATAATATTGGAGTGTAGGTGGT-AAAACACCAGGGCACTGTG-----CTCCAC----------------------------TCTCCTGGAAA-----GCT----GCAG-ATTTGGACCCAC--AGAAAAGTGTCTA---TGAAGAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................CCTACACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	2	0	0	0	2	0
.....................AACCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0
.................ATGTAACCTACACGCCCGTGCGCT..................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0
.................ATGTAACCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0
...................GTAACCTACACGCCCGTGCGC...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.........................TACACGCCCGTGCGCTTCTGCA............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGTGTCTA---TGAAGAGTGCGAGGT.....	23	1	1.00	1	0	0	0	1	0	0	0
..........CGCCAGAATGTAACCTACA..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................TACACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
............................ACGCCCGTGCGCTTCTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........................ACACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................TAATATTGGAGTGTAGGTGGT-........................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
....GCCGCACGCCAGAATGTAACC..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........GCCAGAATGTAACCTACACGCC..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......................ACCTACACGCCCGTGCGCTTCTGCA............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CCAGGGCACTGTG-----CTCCAC----------------------------TCT...........................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................AGGAAATCCCACGGCCAGCT-------GC......................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................GTAACCTACACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TGCATAATATTGGAGTGTAGG.............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........CGCCAGAATGTAACCTACACGC...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................ATGTAACCTACACGCCCGTGCGCTTC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................ATAATATTGGAGTGTAGGT............................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......................CCTACACGCCCGTGCGCTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............AGAATGTAACCTACACGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................CACTGTG-----CTCCAC----------------------------TCTCCTGG......................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................CCCGTGCGCTTCTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0

droYak3

TGCTGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAAGCAGGGGGGAAATCCCACTGCCAGCT-------GCTTT----TCGGTCACGTTCGTCG--------------AC-TT----------------------------------GGCGGAGGTTCTGCTCTGG--AATTGCATAATATTGGCGTGCTGGTGAT-AGAACACCAAGGCACTGTG-----CTCCAC----------------------------ACTCCTGGAAA-----GCT----GCAG-GCTTGGACCCAC--AGAAAAGTGTCTA---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................CTACACGCCCGTGCGCTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GTTGCCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................GCCTACACGCCCGTGCGCTTCT...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CTACACGCCCGTGCGCTTC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AGAATGTTGCCTACACGCCCGTGCGCTT.................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAAAAGTGTCTA---TGGAAAGTGCGAGG......	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................GCCTACACGCCCGTGCGCT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................CACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................GTTGCCTACACGCCCGTGCGCTTCTGCA............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GTTGCCTACACGCCCGTGCGCTTCT...............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GAACACCAAGGCACTGTG-----CTC.............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TGCCTACACGCCCGTGCGCTTCT...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................TGCCTACACGCCCGTGCGCTTCTG..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................CTACACGCCCGTGCGCTTCT...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................TTGCCTACACGCCCGTGCGCT..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................TACACGCCCGTGCGCTTCTGCAA...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CTGCTCTGG--AATTGCATAATATTGGCGT..................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GCTGCCGCACGCCAGAATGTTGC...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GGAAA-----GCT----GCAG-GCTTGGACCCAC--AG..................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CTACACGCCCGTGCGCTTCTGC.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TGCCGCCGCACGCCAAAATGTTACCTACACACCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-AAAACTAG-GGGTAAATCCCACGGATAGCT-------GCTTC----TCGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGATTTGCAGGGCTGA--AATTGCATAATTGAGGAGTGCAGGAGGG-AAAACAACTAAGAGCTGGA-----CTGCTC----------------------------TCACCTAGGAA-----GCT----GCAG-TTTTGGACCCCG--AAAAAAGTGCCAT---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGT-G-AAAAGCAGCAGGCAAATCCCACGGACAGCT-------GCTCCC---CTGGTCACGTTCGCCG--------------AAAGT----------------------------------GGCGGAGGTTCTGGCCTGGATAATTGCATAATTATGAACACCAGATGGG-TCAACACCAAGTCGCAGCA-----GTAGTT----------------------------AACCCCGGGAA-----GCT----GCAG-TTTTGGGCCCCC--A-AAAAGTGCCCAT--TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGATG-AAAGGCTGAGGGGAAATCCCACGGACAGCT-------GCTTAC---CTGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGAGATTCTGGGCTGGATAATTGCATAATTGCGGAGAGCAGGTC----------------------------CC-ACCTGCACCTGTTCAGATGGAGCGAACTTAGTCCCTGGGAA-----ACT----GCAG-CTTTGGGCCCCCCGAGAAAAGTGCCTT---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-CAAACCTAGAGGGAAATCCCACGGATAGCT-------GCTTT----TCGGTCACGTTCGCCA--------------AA-TT----------------------------------GGCGGACATTCTGGACTGG--AATTGCATAACCATGGAGCGCTGGTGGCTAAAACACCAAGGCGTTGCA-----CCC-TG----------------------------TTGCCTGGAAA-----GCT----GCAG-TTTTGGGTCCCG--AGAAAAGTGCCAC---TCGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TACCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-CAAACCAG-AGGGAAATCCCACGGACAGCT-------GCTTT----TCGGTCACGTTCGCCA--------------AA-AT----------------------------------TGTCGCGAATCTGTGCTGG--AATTGCATAATTATGGATGGCTACTGGG-GAGACACCTAGTCGTTGCA-----ATC-TT----------------------------TTCCCGGGGAA-----GCT----GCCG-TTTTCGTTCCCG--AGAAAAGTGCCAT---CGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACCGCCGCACGCCAAAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAAGTAAGTGGA-G-ATAATCAGGAGGGAAATCCCACGGAGCGCT-------GAATT----TCCGTCACGTTCGCCA--------------AAATT----------------------------------GGCGGAGCTTCTTGCCTGG--AATTGCATAATTATGGAGTCAGTGTATG-AAATCACTATGTCATCACA-----CTAGTC----------------------------TCGCCTTGGAA-----GCT----GCAG-TTCTGGACCCCG--AGAAAAGTGCCTT---TGGAAAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCCGCCGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGTG-CCAAAACCAGGAGGGAAATCCCGCAGAT----GAAGC--AGTTTGCCATCCGTCACGTTCACCA-CCGTTGGCTGGCCAA-TT----------------------------------GGCGGCGACCGAAGGCCGG--AATTGCATAATTATGGAGTGGCTGCAGT-CAAATACCAAT----CCTC-----CTGCAC------G-------------GGG-----ACATCTGGAAA-----ACT----GCAA-T-TTGGGCGCAG--GAAAAAGTCGATGTTGTGGAGAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCCGCTGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGGA-G-AAAATCAGGC-GGAAAACTCCCCGCCAGCTGAGAT--GCTTCG---CCCGTCACGTTTGCCT-TTTCCGGACGG--GA-TG----------------------------------GGAGGCGATTTGCTGCTGG--AATTGCATAATACCAAAGTGCATTGAGCTCAAATAAGAAC----CCTACCATGGCT-GC----------------------------TTGCATGGAAA-----GAT----GCAG-TTTTCGCGG-AT--GGAAAAGTGC-------GGAGAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................ATACACGCCCGTGCGTTTCTGC.............................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	3	3	1	0	0	0
........................ATACACGCCCGTGCGTTTCTGCA............................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	2	1	1	0	0	0
...............GAATGTTGCATACACGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
...CGCTGCACGCCAGAATGTTGC...................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0
..............................GCCCGTGCGTTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0	0
.GCCGCTGCACGCCAGAATGTTG....................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................CGCCCGTGCGTTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................TACACGCCCGTGCGTTTCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.GCCGCTGCACGCCAGAATGTTGC...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................ATACACGCCCGTGCGTTTCTGCAA...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.GCCGCTGCACGCCAGAAT........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................ATACACGCCCGTGCGTTTCTGCAAA..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........CACGCCAGAATGTTGCAT.................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
.........................TACACGCCCGTGCGTTTCTGCA............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................GTTGCATACACGCCCGTGCGTTTCTGCA............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..............................GCCCGTGCGTTTCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
......TGCACGCCAGAATGTTGC...................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
TGCCGCTGCACGCCAGAATGTTGCA..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................CACGCCCGTGCGTTTCTGC.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......GCACGCCAGAATGTTGCATACA..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................ATAAGAAC----CCTACCATGGCT-GC----------------------------TT............................................................................	24	1	1.00	1	0	1	0	0	0	0
............................................GCAAAAGTAAGTGGA-G-AAAA.........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...CGCTGCACGCCAGAATGTTGCATACA..............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................GTTGCATACACGCCCGTGCGTTTC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........CGCCAGAATGTTGCATACA..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................GTTGCATACACGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......TGCACGCCAGAATGTTGCA..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................AAATCAGGC-GGAAAACTCCCC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................ACACGCCCGTGCGTTTCTGCA............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
TGCCGCTGCACGCCAGAATGTTGC...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................ATGTTGCATACACGCCCGTGCGTTTCTG..............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................CACGCCCGTGCGTTTCTGCAA...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................GTTGCATACACGCCCGTGCGTTTCTGC.............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............CCAGAATGTTGCATACACGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................CGCCCGTGCGTTTCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

TGCCGCCGCACGCCAGAATGTTGCATACACGCCCGTGCGTTTCTGCAAAAGTAAGTGGA-G-AAATTCAGGT-GGAAAACTCTCCGCCAGCTGAGAT--GCTTTT---CCCGTCACGTTCGCCT-TTTCCGCACGG--GA-TG----------------------------------GGAGGCGATTCGCTGCTGG--AATTGCATAATAGCCGAGTGCATCGAGCTCAAATAAGAAC----CCTACCATGGCT-GC----------------------------TTGCATGGAAA-----GAT----GCAG-TTTTCGCGA-AT--GGAAAAGTGC-------GGAGAGTGCGAGGTTATGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCCGCTGCACGCCAAAATGTTACATACGCGCCCGTGCGTTTTTGCAAAAGTAAGTGCA-G-AAA-TCAA-ACCGAAATCCC--------CT-------GCGCT----GCCGTCACGTCCGCCCGTCGTGGT--GT-------GTAGA------TTTTGGTGTGAAGGCACTTCTGCGTCCGAGTTTCATGGCTAG--GATTGCATAATATGACAACCAATGCAATGCCAGAACACAG----TCTGCGGCAGCC-CC----------------------------CTGCATCTGGA-----GCA----GCAG-TTTTTGGCAATT--GAAAATGCGCCTG---CTTCGGTGGGGAGGTTATGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................GTTACATACGCGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	19	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.................ATGTTACATACGCGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	1	0	0	1	0	0	0	0	0
............................GCGCCCGTGCGTTTTTGCAA...........................................................................................................................................................................................................................................................................................................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TGCGGCAGCC-CC----------------------------CTGCATCTGG....................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATGCGCCTG---CTTCGGTGGGGA........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................AATGTTACATACGCGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.........................TACGCGCCCGTGCGTTTTTGCA............................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTAGA------TTTTGGTGTGAAGGCA.................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0
.......................................................................ACCGAAATCCC--------CT-------GCGCT----GCC............................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAAGGCACTTCTGCGTCCGA....................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.GCCGCTGCACGCCAAAATGTTACAT.................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................CATACGCGCCCGTGCGTTTTTGC.............................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AACACAG----TCTGCGGCAGCC-TT----------------------------T.............................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCC-CC----------------------------CTGCATCTGGA-----GC............................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........CGCCAAAATGTTACATACG..............................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................GTGAAGGCACTTCTGCGTC.......................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.........................TACGCGCCCGTGCGTTTTTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TGCGGCAGCC-CC----------------------------CTGCATCTG.....................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................T--GT-------GTAGA------TTTTGGTGTGAA.....................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...............................................................AA-TCAA-ACCGAAATCCC--------CT-------GC......................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAAGGCACTTCTGCGTCCGAG...................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GTCACGTCCGCCCGTCGTGGT--G....................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................GTTACATACGCGCCCGTGCGT...................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACACAG----TCTGCGGCAGCC-C...........................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GCCTG---CTTCGGTGGGGAGG......	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GAGTTTCATGGCTAG--GATTGCA..............................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................TCTGCGTCCGAGTTTCATGGC..........................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACACAG----TCTGCGGCAGC..............................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CGAAATCCC--------CT-------GCGCT----GCCGT..........................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CTGCATCTGGA-----GCA----GCAG-TT................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................T-------GTAGA------TTTTGGTGTGAAGGC..................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................CGTCGTGGT--GT-------GTAGA------TTTTG............................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAACACAG----TCTGCGGCAGCC-............................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................ACCGAAATCCC--------CT-------GCGCT----GCCC...........................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................AAATCCC--------CT-------GCGCT----GCCGTCA........................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................ACGCGCCCGTGCGTTTTTGCA............................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................TACGCGCCCGTGCGTTTTTG..............................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............CAAAATGTTACATACGCGCCCGTGC.....................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..........................ACGCGCCCGTGCGTTTTTG..............................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................TACGCGCCCGTGCGTTTTTGCAA...........................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....GCTGCACGCCAAAATGTTACATACGC.............................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................GCCGTCACGTCCGCCCGTCGT..........................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TCCC--------CT-------GCGCT----GCCGTCACG......................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................TCCGCCCGTCGTGGT--GT-------GTA.........................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................A-ACCGAAATCCC--------CT-------GCGCT----GC.............................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CGGCAGCC-CC----------------------------CTGCATCTGGA-----..............................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................AATGTTACATACGCGCCCGT.......................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0

droPer2

TGCCGCTGCACGCCAAAATGTTACATACGCGCCCGTGCGTTTTTGCAAAAGTAAGTGCA-G-AAA-TCAA-ACCGAAATCCC--------CT-------GCGCT----GCCGTCACGTCCGCCCGTCGTGGT--GT-------GTAGA------TTTTGGTGTGAAGGCACTTCTGCGTCCGAGTTTCATGGCTAG--GATTGCATAATATGACAACCAATGCAATGCCAGAACACAG----TCTGCGGCAGCC-CC----------------------------CTGCATCTGGA-----GCA----GCAG-TTTTTGGCAATT--GAAAATGCGCCTG---CTTCGGTGGGGAGGTTATGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................TACGCGCCCGTGCGTTTTT...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................GT-------GTAGA------TTTTGGTGTGAAGG...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................CA-G-AAA-TCAA-ACCGAAATCCC--------.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................GT-------GTAGA------TTTTGGTGTGAAG....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................ACGTCCGCCCGTCGTGGT--GT-------............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................GTTACATACGCGCCCGTGCGT...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................GTGCGTTTTTGCAAAAGTAAGTGCA-G-.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................TACGCGCCCGTGCGTTTTTGC.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................GT-------GTAGA------TTTTGGTGTGAAGT...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................GCCTG---CTTCGGTGGGGAGGTT....	21	1	1.00	1	0	0	0	0	0	1

droWil2

TGCTGCCGCTCAACACAATGTTAAATACACGCCCGTGCGTTTTTGCAAAAGTAAGTCAA----------------AAATCGCTTGCCTCGCT-----TGTCGTT----GTCGTCACGTCCACCAGTAGC----AAAATCA-TT----------------------------------C-----GCACCACCACAAG--GATTGCATAATAGAGGA----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................CAAG--GATTGCATAATAGA.......................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
....................TTAAATACACGCCCGTGCG....................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
...................GTTAAATACACGCCCGTGCGTTT.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.GCTGCCGCTCAACACAATGTTAAA..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....................TAAATACACGCCCGTGCGTTTT................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........................TACACGCCCGTGCGTTTTTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...............CAATGTTAAATACACGCCCGTGCGT...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.................ATGTTAAATACACGCCCGTGCGTTTTT...............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........................ATACACGCCCGTGCGTTTTTGCA............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.............................................................................................................................................TT----------------------------------C-----GCACCACCACAAG--GATTG................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.......................AATACACGCCCGTGCGTTTTTGCA............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
TGCTGCCGCTCAACACAAT........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...............CAATGTTAAATACACGCCCGTG......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0

droVir3

TGCCGCCGCACGCCAAAATGTGACATACCACTCCGTTCGCACCTGCAAAAGTAAGTAGG-A-AT--TGCGTACCAAAACG-----G--CGCA-------ACTTC----GCCGTCACGTCCGCCT-TGTTCGCGCGT--G--TGGCAGACAATCCCTTTGCTGCCAAGGCGCCTC-------------CATAAGCCG--TATTACATAATGCG-GACACAAA---AT-ATATCAGGCCTGC----------------------------------------------TGTGTGTGCAACAAAGATTTAGCCAGATTTTAGATGGT----GAAAAGTGTG--------CGGGTGGGAGGTTATGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................AATGTGACATACCACTCCGTTCGCACC................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGTGACATACCACTCCGTTCGCACC................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTCCGTTCGCACCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CACTCCGTTCGCACCTGCAA...........................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTCCGTTCGCACCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AAATGTGACATACCACTCCGTTCGCACC................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTCCGTTCGCACCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TTTAGATGGT----GAAAAGTGTG--------C................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGTGACATACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACGCCAAAATGTGACATACCACTCC.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGTGACATACCACTCCGTTCGCACCTG..............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGATGGT----GAAAAGTGTG--------CGGG.............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ACACAAA---AT-ATATCAGGCCTG............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTCCGTTCGCACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATACCACTCCGTTCGCA..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........CGCCAAAATGTGACATACC..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACATACCACTCCGTTCGCACCTGC.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCGTTCGCACCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TACCACTCCGTTCGCACCTGCAAC..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CT-TGTTCGCGCGT--G--TGGCAGAC......................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CGCCGCACGCCAAAATGTGACATAC...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AAATGTGACATACCACTCC.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AATGTGACATACCACTCCGTTC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GTTCGCGCGT--G--TGGCAGACAATCCC................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AATGTGACATACCACTCCGTTCGCACCT...............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CACTCCGTTCGCACCTGC.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGCAACAAAGATTTAGCCAGA..................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACCTGC.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACCTG..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGTGACATACCACTCCGTTCGCA..................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACCTGCA............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAAATGTGACATACCACTCCGTT......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACCACTCCGTTCGCACCTGCAAAA.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATACCACTCCGTTCGCACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATACCACTCCGTTCGCACCTGCAAAAT........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TACCACTCCGTTCGCACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATACCACTCCGTTCGCAC.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CAAAATGTGACATACCACTCCGTT......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATACCACTCCGTTCGCACCTG..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CCAAAATGTGACATACCACTCCGT.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................TTACATAATGCG-GACACAA...............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACATACCACTCCGTTCGCACC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATACCACTCCGTTCGCACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........CGCCAAAATGTGACATACCACTCCGTT......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCTGCCGCACGCCAAAATGTGACATACAACTCCGTGCGTACCTGCAAAAGTAAGTAAT-A-AAAACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................ATACAACTCCGTGCGTACCTGC.............................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
........................ATACAACTCCGTGCGTACCTGCAA...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................AATGTGACATACAACTCCGTGC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..........CGCCAAAATGTGACATACAACTCCGT.......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................TGTGACATACAACTCCGTGCGTACC................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................CAACTCCGTGCGTACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
......................ACATACAACTCCGTGCGTACCTGCA............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
........................ATACAACTCCGTGCGTACCTGCAAAATG.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........CGCCAAAATGTGACATACAACTCCGTGC.....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
....................TGACATACAACTCCGTGCGTACCTGCA............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................ACTCCGTGCGTACCTGCAAA..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

TGTCGCCGCACGCCAAAATGTAACATACCACTCCGTGCGTACCTGCAAAAGTAAGTACC-A-AA--GAAG-CGAGAAAACTAA------ACG-------GCGCA----ATCGTCACGTCCACCG--------------CC-TC----------------------------------AGTGTGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................ACATACCACTCCGTGCGTACCTG..............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
...................GTAACATACCACTCCGTGCGTACCTGCA............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0

-13.0	-12.7	-12.5	-12.5

dsi_29497

2l:6331539-6331688 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads