ID:

dsi_2948

 Coordinate:

2r:5181181-5181294 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAGTCCCAAGTCCCAGCTGGTAATCTGTGCGTGCCTGGTTAGTGTGCAGGTGAGTGTGTGGAGTGGTCTGGCGGCGCTCCTGGCGGTGACCCACGGGGCGGATGTGGAATCGAGATGCCCTGCGCTGACTCCGTGTCATTCGTTCCATTCACTCCATTCGCAGATACTCATCAACGGCGTTTGGATGGTAATTGCGCCATCACATGCCATGCA
**************************************************.((.....(((((((((..(((..........((((((((..((((((((((.(((((............)))))))).))))))))))).))))))).)))))))))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
...........................GTTCGTGCCTGGTTAGGGT........................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................AGATACTCATCAACGGCG.................................. 18 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................CATTCGTTCCGTTCACTGC.......................................................... 19 2 1 1.00 1 0 1 0 0 0 0
..........................AGTTCGTGCCTGGTTAGGGT........................................................................................................................................................................ 20 3 2 1.00 2 1 0 0 1 0 0
................................TCCCTGGTTAGTGTTGAGG................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 1 0
...................................................................................GCGGTGACCCATGAAGCGGA............................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1
.............................TCGTGCCTGGTTAGGGT........................................................................................................................................................................ 17 2 9 0.11 1 1 0 0 0 0 0
...........................GTTCGGGCCTGGTTAGGGT........................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0 0
.....................TAATCTGTGACTGACTGGT.............................................................................................................................................................................. 19 3 16 0.06 1 0 1 0 0 0 0
.................................................................................................GCTGGATGTGGAATCGA.................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AATCAGGGTTCAGGGTCGACCATTAGACACGCACGGACCAATCACACGTCCACTCACACACCTCACCAGACCGCCGCGAGGACCGCCACTGGGTGCCCCGCCTACACCTTAGCTCTACGGGACGCGACTGAGGCACAGTAAGCAAGGTAAGTGAGGTAAGCGTCTATGAGTAGTTGCCGCAAACCTACCATTAACGCGGTAGTGTACGGTACGT
**************************************************.((.....(((((((((..(((..........((((((((..((((((((((.(((((............)))))))).))))))))))).))))))).)))))))))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR1275483
Male prepupae		 SRR902009
testis
 SRR1275487
Male larvae		 SRR1275485
Male prepupae
..TCAGGAGTCAGGGTCGACCGT............................................................................................................................................................................................... 21 3 1 591.00 591 486 87 6 5 3 1 1 1 0 1 0 0 0
..TCAGGAGTCAGGGTCGAC.................................................................................................................................................................................................. 18 2 5 462.40 2312 1771 480 31 19 4 2 2 2 0 0 0 1 0
..TCAGGAGTCAGGGTCGACCG................................................................................................................................................................................................ 20 3 4 332.75 1331 1082 212 17 12 1 2 3 2 0 0 0 0 0
..TCAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 19 2 2 291.50 583 454 112 11 1 1 1 2 0 1 0 0 0 0
...CAGGAGTCAGGGTCGACCGT............................................................................................................................................................................................... 20 3 3 78.33 235 174 38 6 1 9 6 1 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCG................................................................................................................................................................................................ 19 3 15 27.13 407 314 74 4 4 6 4 0 0 1 0 0 0 0
...CAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 18 2 3 18.67 56 43 9 0 4 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGAC.................................................................................................................................................................................................. 18 1 1 11.00 11 9 1 1 0 0 0 0 0 0 0 0 0 0
CATCAGGAGTCAGGGTCGAC.................................................................................................................................................................................................. 20 3 1 9.00 9 7 2 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGACCG................................................................................................................................................................................................ 20 2 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCGTTA............................................................................................................................................................................................. 23 3 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGGGTCAGGGTCGAC.................................................................................................................................................................................................. 18 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0
.GTCAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 20 3 7 5.00 35 19 5 0 8 1 1 0 0 1 0 0 0 0
CATCAGGAGTCAGGGTCGA................................................................................................................................................................................................... 19 3 14 4.21 59 45 14 0 0 0 0 0 0 0 0 0 0 0
AGTCAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 21 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGACC................................................................................................................................................................................................. 19 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCGTT.............................................................................................................................................................................................. 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
CATCAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 21 3 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGACCGTC.............................................................................................................................................................................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGGGTCAGGGTCGACCG................................................................................................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGATTCAGGGTCGACCG................................................................................................................................................................................................ 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
CGTCAGGATTCAGGGTCGAC.................................................................................................................................................................................................. 20 3 4 1.50 6 5 0 1 0 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGAC.................................................................................................................................................................................................. 17 2 12 1.17 14 0 0 0 0 3 9 1 1 0 0 0 0 0
..TCAGGAGTCAGGGTCGA................................................................................................................................................................................................... 17 2 17 1.12 19 0 0 0 0 1 2 3 1 11 0 0 0 1
..TCAGGAGTCAGGGTCGACCAT............................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGATTCAGGGTCGACC................................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCG.................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCTT............................................................................................................................................................................................... 21 3 3 1.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCATAAG............................................................................................................................................................................................ 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCC................................................................................................................................................................................................ 20 3 6 1.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCAT............................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGGGTCAGGGTCGACCGT............................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGACTCAGGGTCGACC................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGACTCAGGGTCGACCG................................................................................................................................................................................................ 20 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGACCGT............................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGGGTCAGGGTCGACC................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTCGACCGTCA............................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGATTCAGGGTTGACCGT............................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGATTCAGGGTCGACCGTCA............................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGATTCAGGGTCGACCGTC.............................................................................................................................................................................................. 21 3 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGACCCT............................................................................................................................................................................................... 21 3 4 1.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0
.........TCAGGGTCGACCGTTATA........................................................................................................................................................................................... 18 2 5 0.80 4 2 2 0 0 0 0 0 0 0 0 0 0 0
CGTCAGGGGTCAGGGTCGA................................................................................................................................................................................................... 19 3 20 0.80 16 14 2 0 0 0 0 0 0 0 0 0 0 0
.GTCAGGATTCAGGGTCGA................................................................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
CGTCAGGGGTCAGGGTCGAC.................................................................................................................................................................................................. 20 3 18 0.56 10 7 2 0 1 0 0 0 0 0 0 0 0 0
....AGGAGTCAGGGTCGACCGT............................................................................................................................................................................................... 19 3 20 0.55 11 0 0 0 0 6 3 2 0 0 0 0 0 0
...............................................................................GGACCGCCACTGGATG....................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCATC.............................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGACTCAGGGTCGACC................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..GCAGGAGTCAGGGTCGACC................................................................................................................................................................................................. 19 3 20 0.50 10 5 5 0 0 0 0 0 0 0 0 0 0 0
..CCAGGATTCAGGGTCGACCG................................................................................................................................................................................................ 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..CCAGGATTCAGGGTCGAC.................................................................................................................................................................................................. 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCGTTA............................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
CGTCAGGATTCAGGGTCGACC................................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGGGTCAGGGTCGACCG................................................................................................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGATC................................................................................................................................................................................................. 19 3 11 0.36 4 2 1 0 1 0 0 0 0 0 0 0 0 0
AGTCAGGAGTCAGGGTCGA................................................................................................................................................................................................... 19 3 20 0.35 7 7 0 0 0 0 0 0 0 0 0 0 0 0
.GTCAGGGGTCAGGGTCGAC.................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....AGGATTCAGGGTCGACCGTCA............................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........TCAGGGTCGACCATCATA........................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGA................................................................................................................................................................................................... 16 2 20 0.30 6 0 0 0 0 0 0 0 6 0 0 0 0 0
..............................................................................CGGACCGCCACTGGATG....................................................................................................................... 17 2 11 0.27 3 0 0 0 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTTGAGTAGTTGCCGCTAA............................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................GGTGCCCCGCCTCCAGCT......................................................................................................... 18 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................CGCCGCGAGGACCACCA.............................................................................................................................. 17 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.GTCAGGGGTCAGGGTCGA................................................................................................................................................................................................... 18 2 15 0.20 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..CCAGGGGTCAGGGTCGACCG................................................................................................................................................................................................ 20 3 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGTAGTCAGGGTCGACC................................................................................................................................................................................................. 19 3 15 0.20 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAATCAGGGTCGAC.................................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AGTCAGGAGTCAGGGTCGAC.................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGACCGCCACTGGAT........................................................................................................................ 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..TCAGGATTCAGGTTCGAC.................................................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCTACC................................................................................................................................................................................................. 19 3 12 0.17 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGGACCGCCACTGGAT........................................................................................................................ 16 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCTT............................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...CAGGAATCAGGGTCGACCG................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACTA................................................................................................................................................................................................ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCAGGAGTCAGGGTCGTCC................................................................................................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CAGGAGTCAGGGTCGACCC................................................................................................................................................................................................ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATTTGAGTAGTTGCCGCTAA............................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................CGGGGACCGCTACTGGATG....................................................................................................................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..TCAGGCGTCAGGGTCGAC.................................................................................................................................................................................................. 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..TCGGGAGTCAGGGTCGACC................................................................................................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTATGAGTAGTTACCG................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................AGACCGCTGCGAGGA.................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 11:40 AM