dsi_29449

exon [3r_26314104_26314272_-]; CDS [3r_26314104_26314272_-]; exon [3r_26313398_26313992_-]; CDS [3r_26313398_26313992_-]; intron [3r_26313993_26314103_-]

##################################################---------------------------------------------------------------------------------------------------------------################################################## TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGATTGCGGGGTTCCTGCCATGGGTGGCAACTAAAGTTTAGAAACCGGTTGTGTTTTGGTAACTGCCAATCTCCATGTATCTTATATGCATTTTACTCATTTAGATGCTGCTCTGTTACCTCTAACCTTTGCCCCCGAGTCTGGTAACATGCTG ************************************************.....((.(((....((((...(((((((((((((((((((((..((.((.....)).)))))))))...)))))...))))))..........)))....))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	GSM343915 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553488 RT_0-2 hours eggs
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACCT.................................	23	2	1	21.00	21	15	4	1	1	0	0	0
.............................................................................................................................................................ATCGATGCTGCTCTGTTACCT.................................	21	2	1	6.00	6	3	3	0	0	0	0	0
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACCC.................................	23	3	1	4.00	4	2	2	0	0	0	0	0
..........................................................................................................................................................GATATCGATGCTGCTCTGTTACCT.................................	24	3	1	4.00	4	3	0	0	1	0	0	0
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACCTCTAACC...........................	29	2	1	3.00	3	3	0	0	0	0	0	0
...............................................................................................................................................................................................CCGAGTCTGGTAACATGC..	18	0	1	3.00	3	3	0	0	0	0	0	0
.............................................................................................................................................................ATCGATGCTGCTCTGTTACCTC................................	22	2	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................................GATGCTGCTCTGTTACCT.................................	18	0	1	2.00	2	2	0	0	0	0	0	0
...............................................................................................................................................................CGATGCTGCTCTGTTACCT.................................	19	1	1	2.00	2	0	0	1	1	0	0	0
................................................................................................................................................................GATGCTGCTCTGTTACCTCTAAC............................	23	0	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................................................................................TCTGTTACCTCTAACCTTTGCCCCC..................	25	0	1	1.00	1	1	0	0	0	0	0	0
......................CTAATTGGCTCCTGCAACAAGG.......................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACC..................................	22	2	1	1.00	1	1	0	0	0	0	0	0
........................................................TTGATTGCGGGGTTCCTGCCATGGGTGGC..............................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................ATCGATGCTGCTCTGTTACCTCTAACCT..........................	28	2	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................CTCTGTTACCTCTAACCTTTGCCC....................	24	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................ATCGATGCTGCTCTGTTACCG.................................	21	3	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................TATCGATGCTGCTCTGTTACCT.................................	22	2	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................GATGCTGCTCTGTTACCTCT...............................	20	0	1	1.00	1	0	0	0	1	0	0	0
..................GATTCTAATTGGCTCCTG...............................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
..................................TGCAACAAGGATATCGGTACGTTTGAT......................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACCTCT...............................	25	2	1	1.00	1	1	0	0	0	0	0	0
..TCCGCGTGGACGAGCAGATTCTAATT.......................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................GTTACCTCTAACCTTTGCCCC...................	21	0	1	1.00	1	1	0	0	0	0	0	0
.........................ATTGGCTCCTGCAACAAGG.......................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................................................ATATCGATGCTGCTCTGTTACCTC................................	24	2	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................ATCGATGCTGCTCTGTTACCC.................................	21	3	3	0.33	1	0	1	0	0	0	0	0
.............................................................................................................................................................TTAACTGCTGGTCTGTTACC..................................	20	3	3	0.33	1	0	0	0	0	0	1	0
...........................................................................................................................................................ATATCGATGCTGCTCTGT......................................	18	2	8	0.13	1	1	0	0	0	0	0	0
...............................................................................................................................................................CGATGCTGTTCTGTTACCTT................................	20	3	9	0.11	1	0	0	1	0	0	0	0
.............................................................TGCGGGGTTCCTGCGGT.....................................................................................................................................	17	2	10	0.10	1	0	0	0	0	0	0	1
..............................................................................................TTGGAAACCGGTTGT......................................................................................................	15	1	15	0.07	1	0	0	0	0	0	0	1

AAAGGCGCACCTGCTCGTCTAAGATTAACCGAGGACGTTGTTCCTATAGCCATGCAAACTAACGCCCCAAGGACGGTACCCACCGTTGATTTCAAATCTTTGGCCAACACAAAACCATTGACGGTTAGAGGTACATAGAATATACGTAAAATGAGTAAATCTACGACGAGACAATGGAGATTGGAAACGGGGGCTCAGACCATTGTACGAC ************************************************.....((.(((....((((...(((((((((((((((((((((..((.((.....)).)))))))))...)))))...))))))..........)))....))))))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
............................................................................TGCCCACCGTTGATTTC......................................................................................................................	17	1	1	1.00	1	1	0	0
.....................................................................................TTGATTTCGAATCTTTG.............................................................................................................	17	1	4	0.25	1	1	0	0
.......................................................................................................................................................................GGGAAAATGGAGATTGGATA........................	20	3	7	0.14	1	0	1	0
AAATGCGCACCTGATGGTC................................................................................................................................................................................................	19	3	8	0.13	1	0	0	1
...............................................................GCCCTAAGGACTGTAC....................................................................................................................................	16	2	20	0.10	2	2	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:26313943-26314153 -	dsi_29449	TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGCCATGGGTGGCAACTAAAGTTTAGAAACCGGT----TGTGTTTTGGTAACTGCCA------------ATCTCCATGTATCTTATATGCA-------------------------------------------------------------------T--TTTACT----CATTTAGATGCTGCTCTGTTACCTCTAACCTTTGCCCCCGAGTCTGGTAACATGCTG
droSec2	scaffold_4:5828591-5828801 -		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAAGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGCCATGGGTGGCAACTAATGTTTAGAAACCGGT----TGTGTTTTGGTAACTGCCA------------ATCTCCCTGTATCTTATATGCA-------------------------------------------------------------------T--TTTACT----CATTTAGATGCTGCTCTGCTACCTCTAACCTTTGCCCCCGAGTCTGGTAACATGCTG
dm3	chr3R:27010485-27010697 -		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGTCATTGGTGGCAACTAAAGCTTAGAAACTGAT----TGGGTTTTGGGAACTGTCA------------ATTTCCATGTATCTTATATGCA-------------------------------------------------------------------TCTTTTACT----CATTTAGATGCTGCTCTGCTACCTCTTACCTTTGCCCCCGAGTCTGGTAATATGCTG
droEre2	scaffold_4820:974357-974540 +	der_913	TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGAA-------------------------------GGGTCCCTGTAATTG---------------------------------GTTTTGGGAACTGCCA------------GTTTCGATGTGTCTTATATGTA-------------------------------------------------------------------TCTTTTACT----CCATTAGATGCGGCTTTGCTACCTCTGACTTTTGCCCCCGAATCTGGCAACATGCTG
droYak3	3R:27946272-27946474 -		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGACTTCCTTT------------------------GGCGCCCTACAATGG---------------------------------GTTTTGGAAACTTCCATTTCCATTTGTCATTTCCATGTGCCTTATATGCA-------------------------------------------------------------------TTTTTTACT----CATTTAGATGCGGCTCTGCTACCTCTGACCTTTGCCCCCGAATCGGGCAACATGCTG
droEug1	scf7180000409166:22846-23040 +		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTAAGTTTGGC-TTGT---------------------AAAAATATA---T-TGATTTCAGGG---------------------------------ATTTTGATAACAGTTA------------TCAAGCCT------------------------------------------TCATTTTAA---T-----ATTTGTAT------------ATTTTTCATT----CTCCCAGATGCTGCCCTGCTACCTTTGACATTTGCGCCCGAATCTGGTAATATGCTT
droBia1	scf7180000302113:303847-303968 +		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCA-------------------------------GGGCCACTTT-ATCGATGGCCCTGAAAG-TTAGATACTGTTTTG--GGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGTA----GCTG
droTak1	scf7180000415286:123631-123786 -		TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCA-------------------------------GGGACACTTTAATTGATGGTCGGGTAAA-TTAGAAATTGTTTTGCTGGGTTTGGATAACTACTC------------A-------------CTTTTA--------------------------------------------------------AGATAG-----------ATTTT----TACATG-----------------------------------------------GATT
droEle1	scf7180000491194:1010724-1010808 -		TTTCCGCGTGGACGAGCAGATTCTAATTGGGTCCTGCAACAAGGATATCGGTACGTATGAG-TGCA-------------------------------GGGTTACTTTAGTGGATGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777206:322538-322602 +		ATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACT----CCATTAGATGCCGCCCTGCTACCTTTGACCTTTGCCCCCGAATCTGGCAACATGCTG
droFic1	scf7180000453782:295806-295980 +		CTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTGCGTTTGAT-TGCA-------------------------------GGCTCTCTTGAACAG---------------------------------GTTTTAAA---------------------------------------------------TTC--------------------CTTAATTAT-----ACCTATAT------------TTTTGTAACT----TTCTCAGATGCCGCCCTGCTGCCTTTGACCTTCGCCCCCGAATCGGGCAACATGCTG
droKik1	scf7180000301923:122043-122203 -		ATTCCGCGTGGACGAGCAGATTCTAATAGGCTCATGCAACAAGGATATCGGTAGGTTTAAC-----------------------------------------------------------------------------------------------------------------------------ATATAAGCAGTTTCCTATTTCAATT--------------------ATAAT-----ATTTA----------------T-TTCGATT----TAATTAGATGCCGCTCTCTTACCTTTGACCTTTGCCCCCGAATCCGGCAACATGTTG
droAna3	scaffold_13340:14395207-14395364 -		ATTCCGAGTGGACGAGCAGATTTTGATTGGCTCTTGTAATAAGGATATAGGTATGTTTTGATTATA-------------------------------GGTT-TTTATT-------------------------------------------------ACTAT----------------------TTTTATTTG--------------------------------------------------------ACATTG-----------TTTTT----TGATTAGATGCTGCTCTGTTGCCTTTGACCTTTGCTCCCGAATCTGGCAACATGTTG
droBip1	scf7180000395971:770019-770175 +		TTTCCGAGTGGACGAGCAGATTTTGATTGGCTCTTGTAATAAGGACATAGGTATTTTTTGATTGAG-------------------------------AGAT-ACCATT-------------------------------------------------ACTAT----------------------TTTTATTTG--------------------------------------------------------ACTTTG------------TTTT----CGTTTAGATGCCGCTCTGTTGCCTCTGACCTTTGCTCCCGAATCTGGCAACATGTTG
dp5	2:121883-122048 +		TTTCCGCGTGGACGAGCAGATTCTCATAGGCTCCTGCAACAAGGACATAGGTGCGTATGAT-TGCCTGAGTTTCGCTTTGGGCTTGAG---------AG---------------------------------ATTGAT----TG-------------AC-----------------------------------------------------------------------------------------------------TATCC-TTTGT----GCCGTAGATGCCGCTTTGCTGCCTCTGACATTTGCCCCCGAGTCGGGCAACATGCTG
droPer2	scaffold_7:2913560-2913725 +		TTTCCGCGTGGACGAGCAGATTCTCATAGGCTCCTGCAACAAGGACATAGGTGCGTATGAT-TGCCTGAGTTTCGCTTTGGGCTTGAG---------AG---------------------------------ATTGAT----TG-------------AC-----------------------------------------------------------------------------------------------------TATCC-TTTGT----GCCGTAGATGCCGCTTTGCTGCCTCTGACATTTGCCCCCGAGTCGGGCAACATGCTG
droWil2	scf2_1100000004921:676951-677135 -		TTTCCGCATCGATGAGCAAATTTTAATTGGTTCCTGCAACAAGGATATTGGTGCGTATGAT-TTTCTAATT---------------AG----AATGTTAATTACTTT------------------------------------------------------------------------------------------------TATA------TCGAAATCCCAATTTTTGA---T-----ACTCATTT------------ATTTATT-AT----TATCCAGATGCTGCTCTGTTGCCACTGACCTTTGCTCCCGAATCGGGTAATATGTTG
droVir3	scaffold_12855:1270129-1270297 +		TTTCCGCATCGATGAACAGATTTTAATTGGCTCCTGCAACAAGGATATTGGTGCGTATAAT-TTGC-------------------------------TGATTGCTTTCACTG---------------------------------ATTTTGGT----------------------------------------------------------------------CCACTCTAATTAC-----------AC------------ATTTGT-CCC----CTTGCAGATGCTGCTTTGTTGCCGCTTACCTTTGCACCGGAGTCGGGCAACATGCTG
droMoj3	scaffold_6540:27017128-27017294 +		ATTCCGCATCGACGAACAGATTTTGATTGGGTCGTGCAACAAGGATATCGGTGCGTATGAT-TAAT-------------------------------GGC----CTT------------------------------------------------------------------------------------------------TGTCGATTTT-----GGGTTTCACTTTAATTAT---------------------------GG-CCTCTACCTATGACAGATGCTGCGCTTCTGCCGCTGACGTTTGCGCCCGAGTCAGGCAACATGCTG
droGri2	scaffold_14624:3861492-3861670 +		TTTCCGTATCGATGAGCAAATTTTAATTGGGTCCTGCAACAAGGATATTGGTGCGTATAAT-TGTG---------------------------------TTTACCCCAATTG---------------------------------TTATTGGGC---TCTA----------------------------------------------------------------------ATTACATTTG--------ATTTTGCCTTCC-TTCCTTTCC----TCTTTAGATGCTGCCCTACTGCCGCTGACCTTTGCCCCGGAGTCGGGCAATATGTTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGCCATGGGTGGCAACTAAAGTTTAGAAACCGGT----TGTGTTTTGGTAACTGCCA------------ATCTCCATGTATCTTATATGCA-------------------------------------------------------------------T--TTTACT----CATTTAGATGCTGCTCTGTTACCTCTAACCTTTGCCCCCGAGTCTGGTAACATGCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................CCGAGTCTGGTAACATGC..	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCTGCTCTGTTACCT.................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCTGCTCTGTTACCTCTAAC............................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCTGTTACCTCTAACCTTTGCCCCC..................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................TTGAT-TGCG-------------------------------GGGTTCCTGCCATGGGTGGC.......................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CTCTGTTACCTCTAACCTTTGCCC....................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCTGCTCTGTTACCTCT...............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GATTCTAATTGGCTCCTG........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGCAACAAGGATATCGGTACGTTTGAT-..............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..TCCGCGTGGACGAGCAGATTCTAATT................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTTACCTCTAACCTTTGCCCC...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAAGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGCCATGGGTGGCAACTAATGTTTAGAAACCGGT----TGTGTTTTGGTAACTGCCA------------ATCTCCCTGTATCTTATATGCA-------------------------------------------------------------------T--TTTACT----CATTTAGATGCTGCTCTGCTACCTCTAACCTTTGCCCCCGAGTCTGGTAACATGCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................AGATTCTAATTGGCTCCTGCAACAAAGAT..............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................CTAACCTTTGCCCCCGAGTCTGG..........	23	1	1.00	1	0	1	0	0
..TCCGCGTGGACGAGCAGATT......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........................AATTGGCTCCTGCAACAAAGATATC...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................CTAACCTTTGCCCCCGAGTCTG...........	22	1	1.00	1	0	0	1	0
......................CTAATTGGCTCCTGCAACAAAGA...............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

dm3

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCG-------------------------------GGGTTCCTGTCATTGGTGGCAACTAAAGCTTAGAAACTGAT----TGGGTTTTGGGAACTGTCA------------ATTTCCATGTATCTTATATGCA-------------------------------------------------------------------TCTTTTACT----CATTTAGATGCTGCTCTGCTACCTCTTACCTTTGCCCCCGAGTCTGGTAATATGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................AATTGGCTCCTGCAACAAGGA...............................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTTACCTTTGCCCCCGAGTCT............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.......GTGGACGAGCAGATTCTAATT................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....CGCGTGGACGAGCAGATTCTAAT.................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
...CCGCGTGGACGAGCAGATT......................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTGCTACCTCTTACCTTTGCC.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................GCTCTGCTACCTCTTACCTTT........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................GATTCTAATTGGCTCCTGCAACA...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAATTGGCTCCTGCAACAA..................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCCGAGTCTGGTAAT......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATGCTGCTCTGCTACCTCTTA.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGAA-------------------------------GGGTCCCTGTAATTG---------------------------------GTTTTGGGAACTGCCA------------GTTTCGATGTGTCTTATATGTA-------------------------------------------------------------------TCTTTTACT----CCATTAGATGCGGCTTTGCTACCTCTGACTTTTGCCCCCGAATCTGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................GATGCGGCTTTGCTACCTCTGACTTT.........................	26	1	3.00	3	3	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GGCTTTGCTACCTCTGACTTT.........................	21	1	2.00	2	2	0	0	0	0	0	0
......................CTAATTGGCTCCTGCAACAAGGATATC...........................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCGGCTTTGCTACCTCTGACTTTT........................	27	1	2.00	2	2	0	0	0	0	0	0
...............GCAGATTCTAATTGGCTCC..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................TTCTAATTGGCTCCTGCAACAAG.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTGACTTTTGCCCCCGAAT..............	21	1	1.00	1	1	0	0	0	0	0	0
..................GATTCTAATTGGCTCCTGCAACAAG.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................ATTCTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TTTGCTACCTCTGACTTTTGCCCCCG.................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CCTCTGACTTTTGCCCCCGAATCTGGC.........	27	1	1.00	1	1	0	0	0	0	0	0
.................AGATTCTAATTGGCTCCTG........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCGGCTTTGCTACCTCTGACTTTTG.......................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GGCTTTGCTACCTCTGACTTTTGC......................	24	1	1.00	1	0	1	0	0	0	0	0
..................GATTCTAATTGGCTCCTGCAACAAGGAT..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CTTTTGCCCCCGAATCTGGC.........	20	1	1.00	1	0	0	0	1	0	0	0
..........GACGAGCAGATTCTAATTGGC.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................GACTTTTGCCCCCGAATCTGGC.........	22	1	1.00	1	0	1	0	0	0	0	0
......................CTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................CGGCTTTGCTACCTCTGAC............................	19	1	1.00	1	0	0	0	0	0	1	0
.......GTGGACGAGCAGATTCTA...................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
................CAGATTCTAATTGGCTCCTGCAACAAG.................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
........................AATTGGCTCCTGCAACAAGGATAT............................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................TCTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGACTTCCTTT------------------------GGCGCCCTACAATGG---------------------------------GTTTTGGAAACTTCCATTTCCATTTGTCATTTCCATGTGCCTTATATGCA-------------------------------------------------------------------TTTTTTACT----CATTTAGATGCGGCTCTGCTACCTCTGACCTTTGCCCCCGAATCGGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................GGCTCTGCTACCTCTGACCTT.........................	21	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0
.........................ATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCGGCTCTGCTACCTCTGACCTTT........................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................TTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACCTTTGCCCCCGAATCGGGC.........	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................GATTCTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTCTGCTACCTCTGACCT..........................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATGCGGCTCTGCTACCTCTGACCTT.........................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCCCCCGAATCGGGC.........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TACCTCTGACCTTTGCCCCC..................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............GCAGATTCTAATTGGCTCCTGC.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GACGAGCAGATTCTAATTGG..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.TTCCGCGTGGACGAGCAGATT......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGCTACCTCTGACCTTTGCCCCCGAATC.............	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................ATTCTAATTGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTGCTACCTCTGACCTTTGCCCCC..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TGCGGCTCTGCTACCTCTGACCTTTGC......................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
TTTCCGCGTGGACGAGCA..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCCCCGAATCGGGCAACATGCTG	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TGCGGCTCTGCTACCTCTGAC............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GGCTCTGCTACCTCTGACC...........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCCGAATCGGGCAACATGCTG	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................ATTGGCTCCTGCAACAAGGAT..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCCCCCGAAT..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCCCCCGAATCGGGCA........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TCCGCGTGGACGAGCAGATTCT....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................AGATTCTAATTGGCTCCTGCAACA...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTACCTCTGACCTTTGCCCCCGAATCGG...........	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CATTTAGATGCGGCTCTGCTA....................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............AGCAGATTCTAATTGGCTC...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CGAGCAGATTCTAATTGGCT............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCCCCCGAATCGGGCAA.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GACGAGCAGATTCTAATTG...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTGCTACCTCTGACCTTTGC......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........GGACGAGCAGATTCTAATTGGC.............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTAAGTTTGGC-TTGT---------------------AAAAATATA---T-TGATTTCAGGG---------------------------------ATTTTGATAACAGTTA------------TCAAGCCT------------------------------------------TCATTTTAA---T-----ATTTGTAT------------ATTTTTCATT----CTCCCAGATGCTGCCCTGCTACCTTTGACATTTGCGCCCGAATCTGGTAATATGCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCA-------------------------------GGGCCACTTT-ATCGATGGCCCTGAAAG-TTAGATACTGTTTTG--GGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGTA----GCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTACGTTTGAT-TGCA-------------------------------GGGACACTTTAATTGATGGTCGGGTAAA-TTAGAAATTGTTTTGCTGGGTTTGGATAACTACTC------------A-------------CTTTTA--------------------------------------------------------AGATAG-----------ATTTT----TACATG-----------------------------------------------GATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTCCGCGTGGACGAGCAGATTCTAATTGGGTCCTGCAACAAGGATATCGGTACGTATGAG-TGCA-------------------------------GGGTTACTTTAGTGGATGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACT----CCATTAGATGCCGCCCTGCTACCTTTGACCTTTGCCCCCGAATCTGGCAACATGCTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTTCCGCGTGGACGAGCAGATTCTAATTGGCTCCTGCAACAAGGATATCGGTGCGTTTGAT-TGCA-------------------------------GGCTCTCTTGAACAG---------------------------------GTTTTAAA---------------------------------------------------TTC--------------------CTTAATTAT-----ACCTATAT------------TTTTGTAACT----TTCTCAGATGCCGCCCTGCTGCCTTTGACCTTCGCCCCCGAATCGGGCAACATGCTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTCCGCGTGGACGAGCAGATTCTAATAGGCTCATGCAACAAGGATATCGGTAGGTTTAAC-----------------------------------------------------------------------------------------------------------------------------ATATAAGCAGTTTCCTATTTCAATT--------------------ATAAT-----ATTTA----------------T-TTCGATT----TAATTAGATGCCGCTCTCTTACCTTTGACCTTTGCCCCCGAATCCGGCAACATGTTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTCCGAGTGGACGAGCAGATTTTGATTGGCTCTTGTAATAAGGATATAGGTATGTTTTGATTATA-------------------------------GGTT-TTTATT-------------------------------------------------ACTAT----------------------TTTTATTTG--------------------------------------------------------ACATTG-----------TTTTT----TGATTAGATGCTGCTCTGTTGCCTTTGACCTTTGCTCCCGAATCTGGCAACATGTTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................CTTTGACCTTTGCTCCCGAATCTGGC.........	26	1	2.00	2	1	1	0	0	0	0
ATTCCGAGTGGACGAGCA..........................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTTGCCTTTGACCTTTGCTCCCGA................	24	1	2.00	2	0	2	0	0	0	0
............CGAGCAGATTTTGATTGGCT............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................GATTTTGATTGGCTCTTGTAATAAGGAT..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.....GAGTGGACGAGCAGATTTT....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTTTGACCTTTGCTCCCGA................	19	1	1.00	1	0	1	0	0	0	0
..................GATTTTGATTGGCTCTTGT.......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...............GCAGATTTTGATTGGCTCTTGT.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................ATTGGCTCTTGTAATAAGGAT..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................TTTTGATTGGCTCTTGTAATAAGGA...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
.TTCCGAGTGGACGAGCAGAT.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........GGACGAGCAGATTTTGATTGGCT............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGCCTTTGACCTTTGCTCCCG.................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................GCTGCTCTGTTGCCTTTGACCTTTGCT.....................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTTTGACCTTTGCTCCCGAATCTGGCAA.......	28	1	1.00	1	1	0	0	0	0	0
.....................TTTGATTGGCTCTTGTAATAAGGA...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........GACGAGCAGATTTTGATTGGCT............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................GCTGCTCTGTTGCCTTTGAC............................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................CTTTGCTCCCGAATCTGGC.........	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCCTTTGACCTTTGCTCCCGAATCT............	25	1	1.00	1	0	1	0	0	0	0
........................GATTGGCTCTTGTAATAAGGAT..............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTCTGTTGCCTTTGACCT..........................	19	1	1.00	1	1	0	0	0	0	0
.....................TTTGATTGGCTCTTGTAATAAG.................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................TTTGATTGGCTCTTGTAATAAGG................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................CCTTTGCTCCCGAATCTGGC.........	20	1	1.00	1	0	1	0	0	0	0
...............GCAGATTTTGATTGGCTCT..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........GGACGAGCAGATTTTGATTGGCC............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
ATTCCGAGTGGACGAGCAGATTTT....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTGTTGCCTTTGACCTTTGCTCCC..................	24	1	1.00	1	0	1	0	0	0	0

droBip1

TTTCCGAGTGGACGAGCAGATTTTGATTGGCTCTTGTAATAAGGACATAGGTATTTTTTGATTGAG-------------------------------AGAT-ACCATT-------------------------------------------------ACTAT----------------------TTTTATTTG--------------------------------------------------------ACTTTG------------TTTT----CGTTTAGATGCCGCTCTGTTGCCTCTGACCTTTGCTCCCGAATCTGGCAACATGTTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTTCCGCGTGGACGAGCAGATTCTCATAGGCTCCTGCAACAAGGACATAGGTGCGTATGAT-TGCCTGAGTTTCGCTTTGGGCTTGAG---------AG---------------------------------ATTGAT----TG-------------AC-----------------------------------------------------------------------------------------------------TATCC-TTTGT----GCCGTAGATGCCGCTTTGCTGCCTCTGACATTTGCCCCCGAGTCGGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................GCCCCCGAGTCGGGCAACATGCTG	24	1	5.00	5	0	4	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGTCGGGC.........	24	1	4.00	4	0	2	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTGACATTTGCCCCCGAGTCGGGC.........	26	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCCGAGTCGGGCAACATGCTG	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTTTGCTGCCTCTGACATT.........................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCCCGAGTCGGGCAACATGCTG	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACATTTGCCCCCGAGTCGGGC.........	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.TTCCGCGTGGACGAGCAGA........................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TTTGCTGCCTCTGACATTT........................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTGACATTTGCCCCCGAGTCGGGC.........	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................ATTCTCATAGGCTCCTGCAACAA..................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
......................CTCATAGGCTCCTGCAACAAGGAC..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............AGCAGATTCTCATAGGCTC...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AGCAGATTCTCATAGGCTCC..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CATAGGCTCCTGCAACAAGGA...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCCGAGTCGGGCAACATGCTG	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TCTCATAGGCTCCTGCAACAAGGA...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGATTCTCATAGGCTCCTGCAACAAG.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.TTCCGCGTGGACGAGCAGATT......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGATTCTCATAGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGCTGCCTCTGACATTTGC......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AGATGCCGCTTTGCTGCCTCT...............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CCTCTGACATTTGCCCCCGAGTCGGG..........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACATTTGCCCCCGAGTCGGGCAACA.....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CATTTGCCCCCGAGTCGGGC.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATGCCGCTTTGCTGCCTCTGA.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................ATTCTCATAGGCTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCCGCGTGGACGAGCAGATTCT....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GCCGCTTTGCTGCCTCTGACATTTGCCC....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GTGGACGAGCAGATTCTCATAGGC.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........TGGACGAGCAGATTCTCAT.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTTTGCTGCCTCTGACATTTGCCC....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GCAGATTCTCATAGGCTCCT.........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GATTCTCATAGGCTCCTGCAACAAGGAC..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GCCGCTTTGCTGCCTCTGAC............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGTCGGG..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCCTCTGACATTTGCCCCCGAGTCGGGC.........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTGACATTTGCCCCCGAGTCGGGCA........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AGGCTCCTGCAACAAGGACATAGGT........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGCCCCCGAGTCGGGCAACATGCTG	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GGACGAGCAGATTCTCATAGGCT............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GACGAGCAGATTCTCATAGGCTCCTG........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GATTCTCATAGGCTCCTGCAACAAG.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................ATTCTCATAGGCTCCTGCAA.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACATTTGCCCCCGAGTCGGGC.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GTGGACGAGCAGATTCTCATAGG..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CGAGCAGATTCTCATAGG..............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTTCCGCGTGGACGAGCAGATTCTCATAGGCTCCTGCAACAAGGACATAGGTGCGTATGAT-TGCCTGAGTTTCGCTTTGGGCTTGAG---------AG---------------------------------ATTGAT----TG-------------AC-----------------------------------------------------------------------------------------------------TATCC-TTTGT----GCCGTAGATGCCGCTTTGCTGCCTCTGACATTTGCCCCCGAGTCGGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................TGCCCCCGAGTCGGGCAACATGCTG	25	1	4.00	4	0	4	0	0	0	0
..................GATTCTCATAGGCTCCTG........................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
...............GCAGATTCTCATAGGCTCC..........................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTGACATTTGCCCCCGAGTCGGGC.........	26	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................CTTTGCTGCCTCTGACATT.........................	19	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCTGACATTTGCCCCCGAGT..............	21	1	2.00	2	1	1	0	0	0	0
.......GTGGACGAGCAGATTCTCATAG...............................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACATTTGCCCCCGAGTCGGGC.........	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CTTTGCTGCCTCTGACATTTGCCCCCGA................	28	1	2.00	2	2	0	0	0	0	0
....CGCGTGGACGAGCAGATTCTCATAGGCTC...........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGTCGG...........	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CATTTGCCCCCGAGTCGGG..........	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................CTTTGCTGCCTCTGACATTTGC......................	22	1	1.00	1	1	0	0	0	0	0
...............GCAGATTCTCATAGGCTCCTG........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGTCGGGC.........	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCCCGAGTCGGGCAACATGCTG	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGCTTTGCTGCCTCTGACATT.........................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGTCG............	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................TGCTGCCTCTGACATTTGCCCC...................	22	1	1.00	1	1	0	0	0	0	0
.......GTGGACGAGCAGATTCTCATAGGC.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............GCAGATTCTCATAGGCTCCTGC.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTTTGCTGCCTCTGACATT.........................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AGATGCCGCTTTGCTGCCTCTGAC............................	24	1	1.00	1	0	1	0	0	0	0
.........GGACGAGCAGATTCTCATAGGC.............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TTTGCCCCCGAGTCGGGC.........	18	1	1.00	1	1	0	0	0	0	0
................CAGATTCTCATAGGCTCCTGCAACAA..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CATTTGCCCCCGAGTCGGGC.........	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTTTGCTGCCTCTGACATTTGCC.....................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCTGCCTCTGACATTTGC......................	18	1	1.00	1	0	1	0	0	0	0
................CAGATTCTCATAGGCTCCTGC.......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCCCGAGTCGGGCAACATGC..	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTGCCTCTGACATTTGCCCCCGAGTC.............	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CTTTGCTGCCTCTGACATTTGCCCCCGG................	28	1	1.00	1	1	0	0	0	0	0
...................ATTCTCATAGGCTCCTGCAACAAGGAC..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACATTTGCCCCCGAGG..............	19	2	0.50	1	1	0	0	0	0	0

droWil2

TTTCCGCATCGATGAGCAAATTTTAATTGGTTCCTGCAACAAGGATATTGGTGCGTATGAT-TTTCTAATT---------------AG----AATGTTAATTACTTT------------------------------------------------------------------------------------------------TATA------TCGAAATCCCAATTTTTGA---T-----ACTCATTT------------ATTTATT-AT----TATCCAGATGCTGCTCTGTTGCCACTGACCTTTGCTCCCGAATCGGGTAATATGTTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................GATGCTGCTCTGTTGCCACT...............................	20	1	4.00	4	0	0	0	4	0
.............................................................................................................................................................................................................................................................................................................GACCTTTGCTCCCGAATCGGGT.........	22	1	2.00	2	0	0	2	0	0
.........CGATGAGCAAATTTTAATTGGT.............................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
.................AAATTTTAATTGGTTCCTGCAAC....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......................TAATTGGTTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................GCCACTGACCTTTGCTCCCGAATCGG...........	26	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................CTGTTGCCACTGACCTTTGCTCCC..................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................GACCTTTGCTCCCGAATCGGGTA........	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................GATGCTGCTCTGTTGCCACTGA.............................	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................GTTGCCACTGACCTTTGCTCCCGAATCGG...........	29	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................GACCTTTGCTCCCGAATCGGGTAATATGT..	29	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................GCTCTGTTGCCACTGACCTT.........................	20	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCTCCCGAATCGGG..........	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................TGCCACTGACCTTTGCTCCCGAATCGG...........	27	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CACTGACCTTTGCTCCCGAATCGGGT.........	26	1	1.00	1	0	1	0	0	0
....................TTTTAATTGGTTCCTGCAACAAGG................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TGCCACTGACCTTTGCTCCCG.................	21	1	1.00	1	0	1	0	0	0
...........ATGAGCAAATTTTAATTGGTT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................CTGACCTTTGCTCCCGAATCGGGT.........	24	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................TGCTCTGTTGCCACTGACCTTTGC......................	24	1	1.00	1	0	1	0	0	0
..........GATGAGCAAATTTTAATTGGT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......ATCGATGAGCAAATTTTAATTG...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................GCTCTGTTGCCACTGACCTTTGCT.....................	24	1	1.00	1	0	1	0	0	0
.....................TTTAATTGGTTCCTGCAACAA..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................TCTGTTGCCACTGACCTTTGCTCCC..................	25	1	1.00	1	1	0	0	0	0
..........GATGAGCAAATTTTAATT................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0

droVir3

TTTCCGCATCGATGAACAGATTTTAATTGGCTCCTGCAACAAGGATATTGGTGCGTATAAT-TTGC-------------------------------TGATTGCTTTCACTG---------------------------------ATTTTGGT----------------------------------------------------------------------CCACTCTAATTAC-----------AC------------ATTTGT-CCC----CTTGCAGATGCTGCTTTGTTGCCGCTTACCTTTGCACCGGAGTCGGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................GCTTACCTTTGCACCGGAGTCGGGCAA.......	27	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................TTAATTGGCTCCTGCAACAA..................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACAGATTTTAATTGGCTCCTGC.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCTTTGCACCGGAGTCGGG..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................CTTACCTTTGCACCGGAGTCGGGC.........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................GTATAAT-TTGC-------------------------------TGATTGCT...................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGCCGCTTACCTTTGCACCGGA................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACCGGAGTCGGGCAACATGCT.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCCGCTTACCTTTGCACCGGAGTCGGGC.........	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGAACAGATTTTAATTGGCTC...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGCCGCTTACCTTTGCACC...................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GGAGTCGGGCAACATGCTG	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TTGCCGCTTACCTTTGCACCGGAGTCGGGC.........	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCTTTGTTGCCGCTTACCTTTG.......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CGCTTACCTTTGCACCGGAGTCGGGC.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCACCGGAGTCGGGCAACATGCTG	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGCCGCTTACCTTTGCACCGGAGTCGGGC.........	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CGCTTACCTTTGCACCGGA................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCACCGGAGTCGGGCAACATGCTG	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........ATGAACAGATTTTAATTGGCTCCTG........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTCCGCATCGACGAACAGATTTTGATTGGGTCGTGCAACAAGGATATCGGTGCGTATGAT-TAAT-------------------------------GGC----CTT------------------------------------------------------------------------------------------------TGTCGATTTT-----GGGTTTCACTTTAATTAT---------------------------GG-CCTCTACCTATGACAGATGCTGCGCTTCTGCCGCTGACGTTTGCGCCCGAGTCAGGCAACATGCTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
ATTCCGCATCGACGAACAGATTTTGATT................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	4	0	0	0	0	0
.TTCCGCATCGACGAACAGATTTTGATT................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CTTCTGCCGCTGACGTTTGCGCCCG.................	25	1	2.00	2	2	0	0	0	0	0
.................AGATTTTGATTGGGTCGTGCAACAAG.................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	0	1
.................AGATTTTGATTGGGTCGTG........................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
.............GAACAGATTTTGATTGGGT............................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
.............GAACAGATTTTGATTGGGTCGTG........................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
..........GACGAACAGATTTTGATT................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATGCTGCGCTTCTGCCGCTGACGTTTGC......................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GCTGACGTTTGCGCCCGAGTCAGGC.........	25	1	1.00	1	1	0	0	0	0	0
..............AACAGATTTTGATTGGGTCGTGC.......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GTTTGCGCCCGAGTCAGGC.........	19	1	1.00	1	1	0	0	0	0	0
..........GACGAACAGATTTTGATTGGGTCGT.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............ACAGATTTTGATTGGGTCGTG........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............CGAACAGATTTTGATTGGGTCGT.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................CGTGCAACAAGGATATCGA.........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.............GAACAGATTTTGATTGGGTCGTGCAA.....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............AACAGATTTTGATTGGGTCG..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................TTGATTGGGTCGTGCAACAAGGATATCG..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.......ATCGACGAACAGATTTTGATTGGGTC...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CGCTGACGTTTGCGCCCGAGT..............	21	1	1.00	1	1	0	0	0	0	0
.............GAACAGATTTTGATTGGGTCGTGC.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........CGACGAACAGATTTTGATTGGGTC...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
........................GATTGGGTCGTGCAACAAGG................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................AGATTTTGATTGGGTCGTGCAACAAGG................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........CGACGAACAGATTTTGATTG...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......ATCGACGAACAGATTTTGATT................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............GAACAGATTTTGATTGGGTCGT.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................GATTTTGATTGGGTCGTGCA......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................GCTTCTGCCGCTGACGTTTGCGCC...................	24	1	1.00	1	1	0	0	0	0	0
.....................TTTGATTGGGTCGTGCAACAA..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............AACAGATTTTGATTGGGTCGT.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TTTCCGTATCGATGAGCAAATTTTAATTGGGTCCTGCAACAAGGATATTGGTGCGTATAAT-TGTG---------------------------------TTTACCCCAATTG---------------------------------TTATTGGGC---TCTA----------------------------------------------------------------------ATTACATTTG--------ATTTTGCCTTCC-TTCCTTTCC----TCTTTAGATGCTGCCCTACTGCCGCTGACCTTTGCCCCGGAGTCGGGCAATATGTTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......ATCGATGAGCAAATTTTAATTGGGTC...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1

-21.3	-21.1	-21.0	-20.9

dsi_29449

3r:26313993-26314103 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads