ID:

dsi_29448

 Coordinate:

3r:23743563-23743712 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_23743713_23743735_-]; five_prime_UTR [3r_23743736_23744102_-]; exon [3r_23743713_23744102_-]; intron [3r_23735483_23743712_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCTGTCCTGCCAGCAAGGAGCCACAAAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCATATCCATCCAAACGCGACTGATGCGGCACTGCAATCCCTGAAATTGATTCCCTTTGTGTTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGGTCTCCTCCTCGCCTGAGTTCTCATCCTGCCTTCCAGTTGTCCTT
**************************************************................((((((................((((.....(((((((.(((((.....(((.....)))...))))).)))).)))......))))((((.((((((....)))))).))))..)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
........................AAAATGGATTTATCGAGGC............................................................................................................................................................................................................... 19 0 1 5.00 5 5 0 0 0 0
.....................CACAAAATGGATTTATCGAGGC............................................................................................................................................................................................................... 22 0 1 3.00 3 1 1 1 0 0
.....................CACAAAATGGATTTATCGAGGCGGTT........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
........................AAAATGGATTTATCGAGGCGC............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
........................AAAATGGATTTATCGAGGCGG............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..................AGCCACAAAATGGATTTATCGAGGC............................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
......................ACAAAATGGATTTATCGAGGC............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
........................AAAATGGATTTATCGAGGG............................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................GTTCGAATCCTGTCTTCC.......... 18 3 20 0.25 5 0 5 0 0 0
..................................................................................................................................................................................AACTACCTGGGCGAACA....................................................... 17 2 14 0.07 1 0 0 0 1 0
...........................ATGGATTTATCGAGC................................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 1

Anti-sense strand reads

CGACAGGACGGTCGTTCCTCGGTGTTTTACCTAAATAGCTCCGCCAACACCATTCGTAGGCTGTTTGTACATAGGTATAGGTAGGTTTGCGCTGACTACGCCGTGACGTTAGGGACTTTAACTAAGGGAAACACAACGATCGTTTAATGACACAGTTAACCTTAAAATTAAGGCAAACTTGATGTACCCGTTTGTGAACTGTGCCCAGAGGAGGAGCGGACTCAAGAGTAGGACGGAAGGTCAACAGGAA
**************************************************................((((((................((((.....(((((((.(((((.....(((.....)))...))))).)))).)))......))))((((.((((((....)))))).))))..)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
.....................................................................................................................................................................AATTAAGGCAAACTTGATG.................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................TGGCAGACTTGATGTACCCG............................................................ 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CGCCGTTACGTCAGGGACTGT................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...............................................................................................................................................................................AACTTGATGTAGCCG............................................................ 15 1 8 0.25 2 0 0 0 0 2 0
.........................................................................................................................................................................ATGGCAAACTCGATGTA................................................................ 17 2 19 0.11 2 0 0 0 2 0 0
.........................................................................................................................................................................ATGGCAAACTCGATGT................................................................. 16 2 20 0.10 2 0 0 0 2 0 0
...............................................................................................................................................................................................................................AAGAGAAGTACGGAAAGTCAA...... 21 3 12 0.08 1 0 0 0 0 0 1
.....................................................................CATAGGTATAGGTGTGTTCG................................................................................................................................................................. 20 3 13 0.08 1 1 0 0 0 0 0
................................................................................................................................................................................................................................AGAGTTCGATGGAAGGTCA....... 19 3 17 0.06 1 1 0 0 0 0 0
...........................................................................................................................................................................GGCAAACTCGATGTAGCGG............................................................ 19 3 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:23743513-23743762 - dsi_29448 GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACTGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTT-
droSec2 scaffold_22:968609-968858 - GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACTGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTC----------------------------------C-----------------------------CAG--------TTGTCCTT-
dm3 chr3R:24365441-24365690 - GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATTCAAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCT------CCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTT-
droEre2 scaffold_4820:3669954-3670215 + GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATCCATGTATC--------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TCGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCAGAGTCCTCATCC-----------------------------------------------TGC---------------------------------------------------------CCC------------------------------CCGCC-----------------------------CAG--------CTGTCCTG-
droYak3 3R:22131649-22131943 + GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGCAACCATGTATCCC-TGTATC-----------------------------------CATA-----------------------TCC--------------------ATCCGAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TCGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCGGCCCGAGTTCTCATCCTCGTCCCCATCCTGCCACCCAGTTG-------------------TCCTGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTG-
droEug1 scf7180000409787:1215173-1215442 + GCTG---TC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATCCGAACGCGACAGA----TGTA------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACATGGG--TC--TCC------TCCCCG-TCTGAGTTCTCATTT-----------------------------------------------TG---------GTC-----------CTGCTCCT------GGCCCTGT----TCCTC----CTA----------------------------------C-C---GATATCC------------------------------ATCCAT-
droBia1 scf7180000302075:2418961-2419235 + GTCC-CGTC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACATGTATC----------------------------------------------------TGTA-----------------------TCC--------------------ATTCGAACGCGACAGA----TGTA------G-------------------------------------------------------------CAA-------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGG--TCCCTCC------TGCTCA-TCTGAGTCCTGC-------------------------------------------------------------------------------TCCT------G--------------------TTGCCC--------------------------CCCGCC---------------TCTGGCATCCTC--CCGT-------TGGTCCTT-
droTak1 scf7180000415383:93944-94215 + GCTGTTGTC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCATCTATCC----------------------------------------------A-----------------------TCC--------------------ATTCGAACGCGAGAGA----TGTG------G-------------------------------------------------------------CA--------------------------------------GTGCCATCGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGG--TGCT-GCTGCTCCTTCTCCCAGTGAGTCCTCATCC-----------------------------------------------T-C---------------------------------------------------------CTT----------------------------------C-C---G---------------------------------ATTGTCCTT-
droEle1 scf7180000491280:3568192-3568434 + T-------------CAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------TGTA-----------------------TCC--------------------TTCAGAACGCGACTGACTGGTGTGGCCCCAG-------------------------------------------------------------CA--------------------------------------G------TGCAATCGTTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGGATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TT--T-----------------------CTCCTC-------------------------------------------------------------------------CTGCTACT------GCTC-----------------CTT----------------------------------T-C---G---------------------------------AATGTCCTT-
droRho1 scf7180000779501:82401-82665 - GCTG---TC-CT--CAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATCCATC------------------------------------------------CATA-----------------------TCC--------------------ATCCGAACGCGACAGA----TGTA------G------CCAGTGG------------------------------------------------CA--------------------------------------GTG----TGCAATCGTTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGGGCTCCC---------------------------------------------------AGTTGGCTGGT----------G----------------CTC-----------CTGCTCCT------GCTC-----------------CTT----------------------------------C-C---G---------------------------------AATGTCCTG-
droFic1 scf7180000453581:252458-252754 + GCGG-GGTC-CT--CAGCAAGGAGCCTGCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCATCCATC---------------------------------------------------------------------------CAGCCATCTATCCAGCCAC--CCGAACGCGACAGA----TGTA------G-------------------------------------------------------------TAGC-------------------------T----------C------TGCAGTCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGGGCTCCC---------------------------------------------------GGCTGGCAGCTC-------CAG----------------CTCCTGCTGC--TCCTGCTACT------GCTCCTCT----TCGTC----CTT----------------------------------C-C---G---------------------------------ATTGTCCTT-
droKik1 scf7180000302256:130726-130969 - ---------------AACAAGGAGCC-GCAAAAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATTCGAACGCGACGGA----TGTG------G-------------------------------------------------------------GG--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TAGCCAACAAATTACTGTGTCAATGGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGG--CTCCC---------------------------------------------------GACTGGCTGCTT----------------------------------------CTGCTGCT------CCTCGTTC----TCGT-----------------------------------------CCTCGGAG---------------------------------AGCGTCCTGT
droAna3 scaffold_13340:17169670-17169999 - CCTG---CCACAGACAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATCCAATCGCGACTGA----TGTA------GCTGCC---------------ATCCG--------------------------------------GGAGT----------------------TGAGGAGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAATACTTGACACGG--CTCCC---------------------------------------------------GACTGGATGCTTT--------G----------------CTCCTGCTGAGGTCCT-TTCCCATTCCC------CCTCAACCTTCACATCCATCGTCATCGCCATCGCCATTTCCATCTCCTC---C-G---G---------------------------------AATGTCCTG-
droBip1 scf7180000396424:671909-672213 - CCTG---CCACCGACACCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCA-----------------------------------------------------------------------------TCC--------------------ATCCAATCGCGACAGA----TGTA------GCTGCC---------------ATCCG----------------------------------AGTAGGAGT-------------------GGCT--GGAGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGG--CTCCC---------------------------------------------------GACTGGCTGCTTT--------G----------------CTCCTGCTGACGTCC--CTACT------CCTT--GT----TCCTC----CTC----------------------------CTCCGCCTC---G---------------------------------AATCTACTGT
dp5 2:10159527-10159918 + dps_454 GCTA---TCATCAACAGTAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCAGACAAACATGAAA-CATGTATCTTCTGGATGGGAATACTCTACCAGATGCGGCACGGCACAGCCAG----------------------ATAAAT--ACA----------------A-------------------------------TTGTAACCAGTGACTGTGGCAGTGGTAGTGGCAGCGGCA---------------GTAGCAGTGGCAGTGGCAGATACAGTGGCAAGCTG------TGTGTCGTGTT-T-----GGCACGAAATTGATTCCTTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTTCATTTGAACTACATGCGCAAACACTTGACATGG--CTCCT---------------------------------------------------GGCTGGCTGGATGGTCTCCCA---------------------------------------------------GC----TCTTC----CCATCG-----------------------------------------TCTATCCTTGGCATTTTCCT----CCAGTGATTGTCCTGT
droPer2 scaffold_0:10321980-10322359 - GCTA---TCATCAACAGTAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCAGACAAACATGAAA-CATGTATCTTTTGGATGGGAATACTCTACCAGATGCGGCACGGCACTGCCAG----------------------ATTAAT--ACA----------------A-------------------------------TTGTAACCAGTGACTGTGGCAGTGGTAGTGGCAGCGGCA---------G------------------TGGCAGATACAGTGGCAAGCTG------TGTGTCGTGTT-T-----GGCACGAAATTGATTCCTTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTTCATTTGAACTACATGCGCAAACACTTGACATGG--CTCCT---------------------------------------------------GGCTGGCTGGATGGTCTCCCA---------------------------------------------------GC----TCTTC----CCATCG-----------------------------------------TCTATCCTTGGCATTTTCCT----CCAGTGATTGTCCTGT
droWil2 scf2_1100000004902:9045928-9046196 - GCTG------CTGCAATCTTCAAGTG-ACAAAAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACA-ACATCCATGTACA--------------------------------------------TATATCCCCCTTCTTCCTTCCA-----TCT--------------------ATCGAAATGGCA-AAC----TG--------------------------------------------------------------------------------------------------------TGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TGGCCCGCAAATTACTGTGTCAATGGGAATTTTAATTTCATTTGAACTACATGGGCAAACACTTGATATGTCGCTCCT---------------------------------------------------GGCTGGTTGCC---------------------------------------------------------------------------------------------------------------------------------------ATCATCCT----TCACTGATTGTCCTC-
droVir3 scaffold_12822:3812288-3812560 - dvi_2763 AAAG---C----AGCAGC-AGCAGCA-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCC--------C----------------------------------------------------------------ACAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCAGCTGA------------------------AGCAGCAGC-------------------AGCC--GGA-----GTGTT-T-----GGCTGGAAATTGATTCCTTTTGTGCTCGCCCACAAATTACAGTGTCAATGCGAATTTTAATTTCATTTGAACTACATGTGCAAACACTTGACTTGG--CTCCC---------------------------------------------------AACTGGCAGCCTG--------GCAGCCTGACTGACTGGC-------------------------------------------------TT--------------------------------------------------------------------CCGCTGATTGTCCTG-
droMoj3 scaffold_6540:17121195-17121495 - -CTA---TA-TAGATAGCA-CCAGCG-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCT--------C----------------------------------------------------------------ATAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCATCGGCAGCAGCGGCAACAGCGGCAGCAGCAGCGGCAGC-------------------AGTT-----GGATTGTGTT-T-----GGCACGAAATTGATTCCTTTTGTGCTCGCCCACAAATTACAGTGTCAATGCGAATTTTAATTTCATTTGAACTACATGTGCAAACACTTGACTTGG--CTCCT---------------------------------------------------GACTGGCTGCCAG--------GCATCCTGCCTGACTGGC-----------------------------TG----------------------------------------------------------------------------------------CCACTGATTGTCCTG-
droGri2 scaffold_14906:1405154-1405416 - TTCA---TC-----------GAAGCA-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCC--------C----------------------------------------------------------------ACAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCAGCAGCCGCAGTAGC----------------------------------------------A--TCAGC-TCGTATT-T-----GGCGTAAAATTGATT-----------------CAAATTACAGTGTCAATGCGTATTTTAATTTCATTTGAACTACATGTGCAAACACTTGTCTTGG--CTCCT---------------------------------------------------GACTGGCTGGCTG--------ACTGGCTGGCTGACTGGC-----------------------------TG-G-----------------------------GTG------------------------------------------ACTATTTA----CAACTGATTGTCCTG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACTGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................A-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.00500500000000000000
.........................C-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00301100000000100000
.........................C-ACA-AAATGGATTTATCGAGGCGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.............................A-AAATGGATTTATCGAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................A-AAATGGATTTATCGAGGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
......................AGCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...........................ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................A-AAATGGATTTATCGAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100100000000000000
.................................ATGGATTTATCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15150.07100000000010000000
droSec2
GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACTGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTC----------------------------------C-----------------------------CAG--------TTGTCCTT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................C-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020020
...............................AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------CATA-----------------------TCC--------------------ATTCAAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCT------CCCTCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................A-AAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000070000000000000000
................GCAAGGAGCC-ACA-AAATGGATTTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................ATTTATCGAGGCGGTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000
.............................A-AAATGGATTTATCGAGGCGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CTT----------------------------------C-----------------------------CA..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................ATCGAGGCGGTTGTGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................GCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GATTTATCGAGGCGGTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................................................................................................CAAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............CAGCAAGGAGCC-ACA-AAATGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTGTCAATTGGAATTTTAA............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGGATTTATCGAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACA-AAATGGATTTATCGAGGCGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................AAATGGATTTATCGAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................CA-AAATGGATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-CCTGAGTTCTCATCC-----------------------------------------------TGC---------------------------------------------------------CT.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACACTTGACACGGG--TC--TCT------CCCTCG-CCT..............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................AATGGATTTATCGAGGCGGTTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......TC-CTGCCAGCAAGGAGCC-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATCCATGTATC--------------------------------------------CATA-----------------------TCC--------------------ATCCAAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TCGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCG-CCAGAGTCCTCATCC-----------------------------------------------TGC---------------------------------------------------------CCC------------------------------CCGCC-----------------------------CAG--------CTGTCCTG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................A-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030100020
.......................GCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0031200000
....................GGAGCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...............................AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
...............AGCAAGGAGCC-ACA-AAATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................GAGCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...........................ACA-AAATGGATTTATCGAGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
.CTG---TC-CTGCCAGCAAGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..................AAGGAGCC-ACA-AAATGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............................CA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
...............AGCAAGGAGCC-ACA-AAATGGATTTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
..............CAGCAAGGAGCC-ACA-AAATGGATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
..................................................................................................................................................................................................................................................................................................................................................................CTAGCAAATTACTGTGTCAATT......................................................................................................................................................................................................................................................................................2211.0010100000
droYak3
GCTG---TC-CTGCCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGCAACCATGTATCCC-TGTATC-----------------------------------CATA-----------------------TCC--------------------ATCCGAACGCGACGGA----TGCG------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TCGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TC--TCC------TCCTCGGCCCGAGTTCTCATCCTCGTCCCCATCCTGCCACCCAGTTG-------------------TCCTGC---------------------------------------------------------CTT----------------------------------C-----------------------------CAG--------TTGTCCTG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............AGCAAGGAGCC-ACA-AAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................AGCC-ACA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................A-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................A-AAATGGATTTATCGAGGCGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
droEug1
GCTG---TC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATCCGAACGCGACAGA----TGTA------G-------------------------------------------------------------CA--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACATGGG--TC--TCC------TCCCCG-TCTGAGTTCTCATTT-----------------------------------------------TG---------GTC-----------CTGCTCCT------GGCCCTGT----TCCTC----CTA----------------------------------C-C---GATATCC------------------------------ATCCAT-SizeHit CountTotal NormTotal
No Reads
droBia1
GTCC-CGTC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACATGTATC----------------------------------------------------TGTA-----------------------TCC--------------------ATTCGAACGCGACAGA----TGTA------G-------------------------------------------------------------CAA-------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGG--TCCCTCC------TGCTCA-TCTGAGTCCTGC-------------------------------------------------------------------------------TCCT------G--------------------TTGCCC--------------------------CCCGCC---------------TCTGGCATCCTC--CCGT-------TGGTCCTT-SizeHit CountTotal NormTotal
No Reads
droTak1
GCTGTTGTC-CTGTCAGCAAGGAGCC-ACA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCATCTATCC----------------------------------------------A-----------------------TCC--------------------ATTCGAACGCGAGAGA----TGTG------G-------------------------------------------------------------CA--------------------------------------GTGCCATCGCAATCCCTGAAATTGATTCCCTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGG--TGCT-GCTGCTCCTTCTCCCAGTGAGTCCTCATCC-----------------------------------------------T-C---------------------------------------------------------CTT----------------------------------C-C---G---------------------------------ATTGTCCTT-SizeHit CountTotal NormTotal
No Reads
droEle1
T-------------CAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATC----------------------------------------------------TGTA-----------------------TCC--------------------TTCAGAACGCGACTGACTGGTGTGGCCCCAG-------------------------------------------------------------CA--------------------------------------G------TGCAATCGTTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGGATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGG--TT--T-----------------------CTCCTC-------------------------------------------------------------------------CTGCTACT------GCTC-----------------CTT----------------------------------T-C---G---------------------------------AATGTCCTT-SizeHit CountTotal NormTotal
No Reads
droRho1
GCTG---TC-CT--CAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGCTGTGGTAAGCATCCGACAAACATGTATCCATC------------------------------------------------CATA-----------------------TCC--------------------ATCCGAACGCGACAGA----TGTA------G------CCAGTGG------------------------------------------------CA--------------------------------------GTG----TGCAATCGTTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGGGCAAACACTTGACACGGGGCTCCC---------------------------------------------------AGTTGGCTGGT----------G----------------CTC-----------CTGCTCCT------GCTC-----------------CTT----------------------------------C-C---G---------------------------------AATGTCCTG-SizeHit CountTotal NormTotal
No Reads
droFic1
GCGG-GGTC-CT--CAGCAAGGAGCCTGCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCATCCATC---------------------------------------------------------------------------CAGCCATCTATCCAGCCAC--CCGAACGCGACAGA----TGTA------G-------------------------------------------------------------TAGC-------------------------T----------C------TGCAGTCCCTGAAATTGATTCCCTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGGGGCTCCC---------------------------------------------------GGCTGGCAGCTC-------CAG----------------CTCCTGCTGC--TCCTGCTACT------GCTCCTCT----TCGTC----CTT----------------------------------C-C---G---------------------------------ATTGTCCTT-SizeHit CountTotal NormTotal
No Reads
droKik1
---------------AACAAGGAGCC-GCAAAAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATTCGAACGCGACGGA----TGTG------G-------------------------------------------------------------GG--------------------------------------C------TGCAATCCCTGAAATTGATTCCCTTTGTG-TAGCCAACAAATTACTGTGTCAATGGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGG--CTCCC---------------------------------------------------GACTGGCTGCTT----------------------------------------CTGCTGCT------CCTCGTTC----TCGT-----------------------------------------CCTCGGAG---------------------------------AGCGTCCTGTSizeHit CountTotal NormTotal
No Reads
droAna3
CCTG---CCACAGACAGCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCC-----------------------------------------------------------------------------------------------------ATCCAATCGCGACTGA----TGTA------GCTGCC---------------ATCCG--------------------------------------GGAGT----------------------TGAGGAGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAATACTTGACACGG--CTCCC---------------------------------------------------GACTGGATGCTTT--------G----------------CTCCTGCTGAGGTCCT-TTCCCATTCCC------CCTCAACCTTCACATCCATCGTCATCGCCATCGCCATTTCCATCTCCTC---C-G---G---------------------------------AATGTCCTG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................CA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............AGCAAGGAGCC-GCA-AAATGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................CC-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................GAGCC-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...........................GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................C-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
droBip1
CCTG---CCACCGACACCAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCCGACAAACATGTATCCA-----------------------------------------------------------------------------TCC--------------------ATCCAATCGCGACAGA----TGTA------GCTGCC---------------ATCCG----------------------------------AGTAGGAGT-------------------GGCT--GGAGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TTGCCAGCAAATTACTGTGTCAATTGGAATTTTAATTCCGTTTGAACTACATGCGCAAACACTTGACACGG--CTCCC---------------------------------------------------GACTGGCTGCTTT--------G----------------CTCCTGCTGACGTCC--CTACT------CCTT--GT----TCCTC----CTC----------------------------CTCCGCCTC---G---------------------------------AATCTACTGTSizeHit CountTotal NormTotal
No Reads
dp5
GCTA---TCATCAACAGTAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCAGACAAACATGAAA-CATGTATCTTCTGGATGGGAATACTCTACCAGATGCGGCACGGCACAGCCAG----------------------ATAAAT--ACA----------------A-------------------------------TTGTAACCAGTGACTGTGGCAGTGGTAGTGGCAGCGGCA---------------GTAGCAGTGGCAGTGGCAGATACAGTGGCAAGCTG------TGTGTCGTGTT-T-----GGCACGAAATTGATTCCTTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTTCATTTGAACTACATGCGCAAACACTTGACATGG--CTCCT---------------------------------------------------GGCTGGCTGGATGGTCTCCCA---------------------------------------------------GC----TCTTC----CCATCG-----------------------------------------TCTATCCTTGGCATTTTCCT----CCAGTGATTGTCCTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................AAATGGATTTATCGAGGCGGTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
.................................ATGGATTTATCGAGGCGGTTGTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000000
................................AATGGATTTATCGAGGCGGTTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
...........CAACAGTAAGGAGCC-GCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010000
...........CAACAGTAAGGAGCC-GCA-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000010000
................................AATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000010
....................GGAGCC-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000010000
...........CAACAGTAAGGAGCC-GCA-AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000010000
...........CAACAGTAAGGAGCC-GCA-AAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
............................CA-AAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000001
.........ATCAACAGTAAGGAGCC-GCA-AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
.......................GCC-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
droPer2
GCTA---TCATCAACAGTAAGGAGCC-GCA-AAATGGATTTATCGAGGCGGTTGTGGTAAGCATCAGACAAACATGAAA-CATGTATCTTTTGGATGGGAATACTCTACCAGATGCGGCACGGCACTGCCAG----------------------ATTAAT--ACA----------------A-------------------------------TTGTAACCAGTGACTGTGGCAGTGGTAGTGGCAGCGGCA---------G------------------TGGCAGATACAGTGGCAAGCTG------TGTGTCGTGTT-T-----GGCACGAAATTGATTCCTTTTGTG-TTGCTAGCAAATTACTGTGTCAATTGGAATTTTAATTTCATTTGAACTACATGCGCAAACACTTGACATGG--CTCCT---------------------------------------------------GGCTGGCTGGATGGTCTCCCA---------------------------------------------------GC----TCTTC----CCATCG-----------------------------------------TCTATCCTTGGCATTTTCCT----CCAGTGATTGTCCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................C-GCA-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.004400000
.........................C-GCA-AAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
..TA---TCATCAACAGTAAGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........ATCAACAGTAAGGAGCC-GCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................C-GCA-AAATGGATTTATCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................GTGGCAGTGGTAGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droWil2
GCTG------CTGCAATCTTCAAGTG-ACAAAAATGGATTTATCGAGGCGGTTGTGGTAAGCATCTGACAAACA-ACATCCATGTACA--------------------------------------------TATATCCCCCTTCTTCCTTCCA-----TCT--------------------ATCGAAATGGCA-AAC----TG--------------------------------------------------------------------------------------------------------TGT-TCGTGTT-T-----GGCATGAAATTGATTCCTTTTGTG-TGGCCCGCAAATTACTGTGTCAATGGGAATTTTAATTTCATTTGAACTACATGGGCAAACACTTGATATGTCGCTCCT---------------------------------------------------GGCTGGTTGCC---------------------------------------------------------------------------------------------------------------------------------------ATCATCCT----TCACTGATTGTCCTC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................G-ACAAAAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.00400040
.............................AAAAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00320010
...............................AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200011
...............................AAATGGATTTATCGAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
.................................ATGGATTTATCGAGGCGGTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
....................................................................................................................................................................................................AC----TG--------------------------------------------------------------------------------------------------------TGT-TCGTGTT-T-----GGCATGAA................................................................................................................................................................................................................................................................................................................................2311.00100001
.......................GTG-ACAAAAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.........................G-ACAAAAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..............................AAAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................................................................................................................................................................................................................................T-T-----GGCATGAAATTGATTCCTTTTGTG-T..............................................................................................................................................................................................................................................................................................................2711.00100010
............................CAAAAATGGATTTATCGAGGCGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
........................TG-ACAAAAATGGATTTATCGAGGCGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
AAAG---C----AGCAGC-AGCAGCA-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCC--------C----------------------------------------------------------------ACAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCAGCTGA------------------------AGCAGCAGC-------------------AGCC--GGA-----GTGTT-T-----GGCTGGAAATTGATTCCTTTTGTGCTCGCCCACAAATTACAGTGTCAATGCGAATTTTAATTTCATTTGAACTACATGTGCAAACACTTGACTTGG--CTCCC---------------------------------------------------AACTGGCAGCCTG--------GCAGCCTGACTGACTGGC-------------------------------------------------TT--------------------------------------------------------------------CCGCTGATTGTCCTG-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................G-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...............AGC-AGCAGCA-GCG-AAATGGATTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ATTACAGTGTCAATGCGA...................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
.............................G-AAATGGATTTATCGAGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
......................AGCA-GCG-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................GCAGCA-GCG-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
AAAG---C----AGCAGC-AGCAGCA-GCG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.081000000000000000000000000100000000000000000000000000000000000000
droMoj3
-CTA---TA-TAGATAGCA-CCAGCG-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCT--------C----------------------------------------------------------------ATAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCATCGGCAGCAGCGGCAACAGCGGCAGCAGCAGCGGCAGC-------------------AGTT-----GGATTGTGTT-T-----GGCACGAAATTGATTCCTTTTGTGCTCGCCCACAAATTACAGTGTCAATGCGAATTTTAATTTCATTTGAACTACATGTGCAAACACTTGACTTGG--CTCCT---------------------------------------------------GACTGGCTGCCAG--------GCATCCTGCCTGACTGGC-----------------------------TG----------------------------------------------------------------------------------------CCACTGATTGTCCTG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............ATAGCA-CCAGCG-GCG-AAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................................................................................................................................................................................................................................................AGCGGCAACAGCGGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................G-AAATGGATTTATCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................T--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................GCA-CCAGCG-GCG-AAATGGATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droGri2
TTCA---TC-----------GAAGCA-GCG-AAATGGATTTATCGAGGCGGTTGCGGTAAGCATCTGACAAATATGTATCC--------C----------------------------------------------------------------ACAGAT--ACA----------------A-------------------------------TTGCC---------------AGCCGCAGCAGCAGCCGCAGTAGC----------------------------------------------A--TCAGC-TCGTATT-T-----GGCGTAAAATTGATT-----------------CAAATTACAGTGTCAATGCGTATTTTAATTTCATTTGAACTACATGTGCAAACACTTGTCTTGG--CTCCT---------------------------------------------------GACTGGCTGGCTG--------ACTGGCTGGCTGACTGGC-----------------------------TG-G-----------------------------GTG------------------------------------------ACTATTTA----CAACTGATTGTCCTG-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:37 AM