ID:

dsi_29393

 Coordinate:

3r:4626089-4626238 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.0 -5.4 -5.1 -5.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 2l:9918050-9918064 -
  2. 2r:17693215-17693229 -
  3. dsi_11233  3l:15529778-15529792 -
  4. 3l:17512653-17512667 -
  5. 3r:3756045-3756059 +
  6. 3r:4585796-4585810 +
  7. dsi_29393  3r:4626164-4626178 +
  8. 3r:5811055-5811069 -
  9. 3r:14665837-14665851 -
  10. x:15374532-15374546 -
  11. x:16102366-16102380 -
  12. node_76130:887-901 -
  13. node_3264:268-282 -
  14. node_33523:77-91 +
  15. node_109567:321-335 +
  16. node_7842:665-679 -
  17. node_62295:178-192 -
star
  1. 2l:20747659-20747676 +
  2. 2l:20824712-20824729 +
  3. 2l:21410254-21410271 +
  4. 2l:21822374-21822391 +
  5. 2r:171457-171474 +
  6. 2r:1489006-1489023 +
  7. 2r:1700807-1700824 +
  8. 2r:2436454-2436471 +
  9. 2r:2583886-2583903 +
  10. 2r:21483311-21483328 +
  11. 3l:20885076-20885093 +
  12. 3l:22593381-22593398 +
  13. 4:158656-158673 +
  14. 4:703903-703920 +
  15. x:42271-42288 +
  16. x:3395937-3395954 +
  17. x:13364176-13364193 +
  18. node_27873:850-867 +
  19. node_72290:5514-5531 +
  20. node_115087:14986-15003 +
  21. 2l:21040833-21040850 +
  22. 2l:23110271-23110288 +
  23. 2l:23175437-23175454 +
  24. dsi_6722  2r:1194645-1194662 +
  25. 2r:2347805-2347822 +
  26. 2r:2382227-2382244 +
  27. 2r:14152581-14152598 +
  28. dsi_31346  3l:17823404-17823421 +
  29. dsi_22826  3l:22501215-22501232 +
  30. dsi_29393  3r:4626221-4626238 +
  31. x:10292298-10292315 +
  32. x:19129770-19129787 +
  33. x:19183092-19183109 +
  34. x:20522746-20522763 +
  35. node_41177:92-109 +
  36. node_22823:2744-2761 +
  37. node_62956:1123-1140 +
  38. node_62956:4941-4958 +
  39. node_12893:1896-1913 +
  40. node_52566:7387-7404 +

Sense Strand Reads

TCCGCTTTACCAAGCAGGAAAAGCAGTCCGAGATTTTAGGGTACATGAAGGTACGTACATAATCTATACATATATCTCTGCTTTAAATGTATCAAATTTTAAGAAATTATGATACCCGTTAATTATTATTATTATTGATTTTAATGTTTTTCTTGCCAATTGAAATTTTTTCCTCAAACTAACACTAGCTGAGTAACGGGTATCTAATAGTCGAGTTACTTTCTCTTTTGTTTTTAACATATCAAATATG
*****************************************************************************************************************************((.(((((...(((((((((.............)))))))))........................)))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.........................................................................................................................................................................................TAGCTGAGTAACGGGTATCTAAT.......................................... 23 0 15 0.87 13 0 13 0 0 0 0 0 0
...............................................................................................................................ATTATCATTGATTTTAGTGT....................................................................................................... 20 2 4 0.75 3 0 3 0 0 0 0 0 0
...................................................................................................................................................................................GAGCACTAGCTGAGTAAAGGGTATCTAA........................................... 28 3 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAGTAACGGGTATCTAATAGTC...................................... 23 0 17 0.35 6 6 0 0 0 0 0 0 0
................................................................................................................................TTATCATTGATTTTAGTGTTT..................................................................................................... 21 2 3 0.33 1 0 0 1 0 0 0 0 0
...............................................................................................................................ATTATTATTGATTTTTGTGTTT..................................................................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TGAGTAACGGGTATCTAATAGTCGA.................................... 25 0 4 0.25 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TGAGTAACGGGTATCTAATAGTCG..................................... 24 0 17 0.18 3 1 0 0 2 0 0 0 0
...............................................................................................................................ATTATTATTGATTTTTGTGT....................................................................................................... 20 2 17 0.18 3 0 0 2 0 0 0 0 1
................................................................................................................................................................................ATCTGACACTAGCTGAGTAACGGGT................................................. 25 2 6 0.17 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CACTAGCTGAGTAACGGGT................................................. 19 0 20 0.15 3 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCTGAGTAACGGGTATCTAATAGTC...................................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0
................................................................................................................................TTATTATTGATTTTTGTGTTT..................................................................................................... 21 2 12 0.08 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................TAGCTGAGTAACGGGTATTTAATAGTC...................................... 27 1 13 0.08 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................GCTGAGTAACGGGTATCTAATA......................................... 22 0 14 0.07 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGCTGAGTAACGGGTATCTAATA......................................... 23 0 14 0.07 1 1 0 0 0 0 0 0 0
.............................................................................................................................TTATTATTATTGATT.............................................................................................................. 15 0 17 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAGTAACGGGTATCTAATAG........................................ 21 0 20 0.05 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................TGAGTAACGGGTATCTAGAA......................................... 20 2 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TCTTTTCTTTTTAACA........... 16 1 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................ACGGGTATCTAATAGT....................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CACTAGCTGAGTAACGGGTATCT............................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
....................AAGCAGTCGGAGTTTTT..................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................GGTATCTAATAGTCGA.................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CACTAGCTGAGTAACGGG.................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAGTAACGGGGATTTAATAG........................................ 21 2 20 0.05 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CTAGCTGAGTAACGGG.................................................. 16 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GCTGAGTAACGGTTATCTA............................................ 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCTCTTCTGTTTTTA.............. 15 1 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................ACACTAGCTGAGTAACGGGTA................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AACGGGTATCTAATAGTC...................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGGCGAAATGGTTCGTCCTTTTCGTCAGGCTCTAAAATCCCATGTACTTCCATGCATGTATTAGATATGTATATAGAGACGAAATTTACATAGTTTAAAATTCTTTAATACTATGGGCAATTAATAATAATAATAACTAAAATTACAAAAAGAACGGTTAACTTTAAAAAAGGAGTTTGATTGTGATCGACTCATTGCCCATAGATTATCAGCTCAATGAAAGAGAAAACAAAAATTGTATAGTTTATAC
**************************************************((.(((((...(((((((((.............)))))))))........................)))))..))***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body
..............................................................................................................................................................................GTTTGATTGTGATCGACTCATTGCC................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGGCTCATTGCCCATAGATTATCAGCT.................................... 27 1 3 0.33 1 0 1 0 0 0 0 0 0
......AAGGGTTCGTCCTTTTGGT................................................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTGATCGACTCATTGCCCATAGATT........................................... 26 0 7 0.29 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAGAAAAGAAAAATTGTAGGG....... 21 3 4 0.25 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................AAAAAAGGAGCTTGAT..................................................................... 16 1 9 0.22 2 0 0 1 0 0 1 0 0
........................................................................................................................................................................................GATCGACTCATTGCCCATAGATTAT......................................... 25 0 10 0.10 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................AAAGGATTTTGATTGT.................................................................. 16 1 11 0.09 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................CGACTCATTGCCCATAGATTATCAGC..................................... 26 0 11 0.09 1 0 0 1 0 0 0 0 0
..........................TGGCTCTAGAATCCCA................................................................................................................................................................................................................ 16 2 12 0.08 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................GATCGACTCATTGCCCATAGATT........................................... 23 0 14 0.07 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................TTTTGATCGACTCATTGCCCAT................................................ 22 1 16 0.06 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGACTCATTGCCCATAGATT........................................... 20 0 19 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................GTAGCTTGATTGTGCTCG............................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................ATCGACTCATTGCCCAT................................................ 17 0 20 0.05 1 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:09 AM