ID:

dsi_29392

 Coordinate:

3r:12329448-12329597 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.7 -12.7

Flybase annnotation

exon [3r_12329598_12329679_+]; CDS [3r_12329598_12329679_+]; Antisense to exon [3r_12329286_12329473_-]; Antisense to five_prime_UTR [3r_12329366_12329473_-]; intron [3r_12328258_12329597_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTAATAACTTTATATCGCTGCTGTGATGTCTCGACTCAGCAAAAGTCTAATAAACCAGGAAATATTTGTTTGCTTGCTGCTAGGCAACGACAGGCCAACTATTTTCGTTGATTTCGAAACTGAAACCATTTCCTGAGCAGGAAATTATGGTTTACGATATTATTTATTCGTTATTAAATGCGTTTAACTTGCTTTTCAGGCGCCGAGCTCTCCGGGCAGTTGGATCGTTGGCTGGGTGCCGCCGATTTG
*****************************************************.....(((((((.(((((((.(((((....)))))...)))).))).))))))).....(((((....)))))..************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 O001
Testis
 O002
Head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................AAGTTGGATCGTTTGCTGGG............. 20 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCGGGAAGTTGGATCGTTTGC................. 21 3 4 1.50 6 6 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTTGGATCGTTGGCT................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGAAGTTGGATCGTTTGCTG............... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................TTCTGTGATGTCACGACTGAGC................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATCGTTGGCTGGGTGCCGCC...... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TTTCCTTGATTTCGAAACTGA.............................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGATCGTTGGCTGGGTGCCGC....... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GATCGTTGGCTGGGTGCCGCC...... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAGTTGGATCGTTTGCTGGGG............ 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................AACCAGGAAATATTTGTTTGC................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................TTTCGTTGATTTCGAAACTGAAACC.......................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................GTGATGTCTCGACTCAGCAAAAGT........................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................TGTCTCGACTCAGCAAAAGTC.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TTGGATCGTTTGCTGGGG............ 18 2 8 0.63 5 5 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTTGGATCGTTTGCTGGGG............ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAGTTGGATCGTTTGCTGG.............. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................GTTGATTTCGAAACT................................................................................................................................ 15 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
...................TTCTGTGATGTCCCGACTGAGC................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TTGGATCGTTTGCTGG.............. 16 1 8 0.38 3 3 0 0 0 0 0 0 0 0 0
..........TTAGATCGCTTCTGTGAT.............................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................TTTTGTTTATTCGTTATTAAA....................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTTGGATCGTTTGCTGGGGC........... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAGTTGGATCGTTTGCTG............... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTTGGATCGTTTGCTGGGGA........... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
......................................................................TTACTTGATGCTAGGCA................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CATTTCCTGAGCACAAAA......................................................................................................... 18 2 19 0.11 2 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................................................................AGTTTGATCGTTTGCTGGGG............ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................AACCATCTCCTGAGAA.............................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

############################################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATTATTGAAATATAGCGACGACACTACAGAGCTGAGTCGTTTTCAGATTATTTGGTCCTTTATAAACAAACGAACGACGATCCGTTGCTGTCCGGTTGATAAAAGCAACTAAAGCTTTGACTTTGGTAAAGGACTCGTCCTTTAATACCAAATGCTATAATAAATAAGCAATAATTTACGCAAATTGAACGAAAAGTCCGCGGCTCGAGAGGCCCGTCAACCTAGCAACCGACCCACGGCGGCTAAAC
**************************************************************************************************************************.....(((((((.(((((((.(((((....)))))...)))).))).))))))).....(((((....)))))..***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................CCGCGGCTCGAGAGGCCCGTC.............................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................ACGACGATCCGTTGCTGTCC........................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
...............AGCGACGACACTACAGAGCTG...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............AGCGACGACACTACAGAGCTGA..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................................CGGCTCGATAGGCCCG................................ 16 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................................................................CTCGGCTCGATAGGCCCG................................ 18 2 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................................CTCGCGGCTCGATAGGCCCG................................ 20 3 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................................................................ACGACTCGATAGGCCCGTCAA............................ 21 3 5 0.20 1 0 1 0 0 0 0
..........................................................................................................................................................................................................CCGCTCGATAGGCCCG................................ 16 2 20 0.20 4 0 4 0 0 0 0
...............................................................................................GGTTCATAAAAGCAGCTAAAT...................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 1
.......................................................................................................................................................................................................CCGGCGCTCGATAGGCCCG................................ 19 3 11 0.09 1 0 1 0 0 0 0
.........................................................................................................................................................................................................GCGGCCCGAGGGGCCCG................................ 17 2 13 0.08 1 0 1 0 0 0 0
.............ATAGCGACGACACTC.............................................................................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 1 0
................................................ATTTTTTGGTCCTTTA.......................................................................................................................................................................................... 16 1 19 0.05 1 0 0 0 0 1 0
............................................................................................TCCGGTTGAGAAAAG............................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0
..............................................AGAATATTTGGTGCGTTAT......................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:12329398-12329647 + dsi_29392 TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATGTC------T---CGACTCAGCAAAAGT----------CTAATA-------AA-----CCAGGAAA---TATTTGTTTGC-TTGCTGCTAGGCA---ACGACAGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CATTTC----------------CTGAGCAGG---------------------AAATTA-------------T------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------TTA------A--ATGCGTTT------------------------------AACTTGCTTTTCAGGCGCCGAGCTCTCCGGGCAGTTGGATCGTTGGCTGGGTGCCGCCGATTTG
droSec2 scaffold_0:13160732-13160983 + TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T-CTCGACTCAGCGAAAGT----------CTTATA-------AA-----CCAGGAAA---TATTTGTTTGC-TTGCTGCTAGGCA---ACGAAAGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAACTC----------------CTGAGCAGG---------------------AAATTA-------------G------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------TTA------A--ATGCGTTT------------------------------AACTTGCTTTTCAGGCGCCGAGCTCTCCGGACAGTTGGATCGTTGGCTGGGTGCCGCGGATTTG
dm3 chr3R:8835443-8835694 - TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T-CTCGATTTAGTGAAAGT----------CTTATA-------AA-----CCAGGAAA---TATTTGTTTGT-TTGCTGCTAGGCA---ACGACTGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------CTGAGCAGG---------------------GAATTA-------------T------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------ATA------A--ATGTATTT------------------------------ACTTTGCTTTTCAGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTGGGTGCCGCAGATTTG
droEre2 scaffold_4770:12813465-12813740 + TTTA--ATAGCTT-----------------TATATCGCTGC--------------A-GTGATAAG------T---AGACTCGGAAAAAGT----------CTTATG-------AA-----CCTGGAAA---TATTTGTTTGT-TTGCTGCTAGGCA---ACGAAAGGCCAACTAATTCAGTT--------------TATTTCAAAGCTGAAAT----------------------CCT--------------------------------------------TCTAGGTGTTTATTTTACTTATAGAAA---------------C--------------------------CAAC------------------------------------------------ATTG--TTCCATTAACAA-----------------------------TT---ATACC----------ATTATTTATT-C------GTTA------ACC------A--TTTTATTC------------------------------AACTTGCTTTTTAGGCACCGAACTCTCCAGGCAATTAGATCGTTGGCTGGGTGCCGCGGATTTG
droYak3 3R:13129671-13129970 - TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T---CGACTCGGCAATAAT----------CTTATA-------AG-----CCTGGAA---CTATTTGTTTGT-TTGCTGCTAGGCA---ACGACAGGCCAACTATTTTTAGT---------------ATTTCAAAACTGAAAC------------------------G--------------------------------------------TGCAGGTGTTTATTTTACTTACAAAAA---------------C--------------------------CAATTC----------------CTGCACAGG---------------------TTATTA----------------AAGTAATTACGGG--AACATAGGGATTACTATACC----------ACTCTGTATT-C------ATTA------AAC------A--ATTCATTC------------------------------AACTTGCTTTTCAGGTGCCGAGCTCTCCAGGCAGTTGGATCGTTGGCTGGGTGCCGCGGACCTG
droEug1 scf7180000409802:1192801-1193025 + TTTA--ATAACT------------------TATATCACAGC--------------T-GAATGATG------T---CGATTCAGCAAAAAC----------CAAATA-------AA-----CCTGGTGATATTTTTTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATTAGTT--------------TATTTGTAA--TGAAGC------------------------------------------------------------------------------------------------------------------------------------------CTCATT----------------C-GAAAAGGATTCATTGTA----------------------------------------------------------------------------------------------------------AAT------G--ATTTGTTT------------------------------AA--TACTTTTCAGGTACTGAGCTCTCTAGACAGTTGGATCACTGGTTGGGTGCCGCGGATCTC
droBia1 scf7180000299102:1119677-1119941 + ATTA--ATAGCT------------------TGTATCGCTGC--------------A-GTATTATG------T---CTATCCAGCAAAAGT----------TCAATG-------GA-----ACTGCTGATTTTTGTTGTTTGT-TTGCTGCTAGGCA---ACGCAAAGTCAACTAAGTTGGTT--------------TATT--------GAATC--------------CTCTGTTTTC---------------------------------------------------TGTTTAT-------ATTTACA---------------T------------------------------------------------TT-----AG---------------------GTACCA-------------T------------------------TATATAGA-------------ATATTATTTATTAAAACTCAATTA------TTA------TTTATGTTCCT------------------------------AA--CTTTTTTCAGGCACTGAGCTCTCCAGGCAGCTGGACCGCTGGTTGGGTGCCGCTGATCTC
droTak1 scf7180000415653:28338-28643 + TTTA--ATAACT------------------TGGATCGCTGC--------------T-GTATTAAG------T---CGATTCAGCAAAATT----------CTAATA-------GA-----ACTGTTGATATTTTTTGTTTAT-TTGCTGCTAGGCA---ACGCAATGCCAACTAAGTTGGTT--------------AACT--------GGAAC--------------ACTAGCATTCTTTCAATTAATTAAATTATATG-CAAAGATATCATTATTAAATGGTGTTGGTA----------------------TTGTAACTAAATCAATA---------------------------------------------------GA---------------------AATTT-------------------------ACAAGTTAAAATAAGAATTACT------------------------------------A------AGT------A--ATGATTTT------------------------------TACTTGTTTTTCAGGCACTGAGCTCTCCAGGCAGTTGGACCGCTGGTTGGGTGCCGCTGATCTC
droEle1 scf7180000486474:132090-132191 - TTTA--ATAACT------------------TAAAGCGCTTT--------------T-CTGATTTG------T---CGAATCAGCA--AGT----------CTAATAC------CA-----ACTGGTGATATTATTTGTTTGT-TTGCTGCTAAGCA---ACGCCAGGCCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778053:45499-45853 - TTTA--ATA-----------------------TATAGCTGT--------------T-CTGACTTG------T---CGAAT-AGCG--AGT----------CTAATA-------CA-----ACTGGTGATATTATTTGTTTTT-TTGCTGCTAGGCA---ACGCTAGGCCAACTCAGTTTGCTAGAATATAAATCGCGTTTCAAAAGCTAA--CATTTTTTAGAATTATTC----------------------------------------------------------TATAATTATTTTTTTCCTTGAAGTTTGTCACAAAAACAAGACCTTCAAAACTAGAAGAGAATA--AAATGTATATC-----------------AGA-AATTATAAAACTTTATTTAGTTTA--AAATTTAAAA-----------------------------TT---ACATT---TT------TAATTTCTT-T------ATT----------------A--ATAATTTT------------------------------GTCATG-TTTTCAGGGTCAGAGCTCTCTAGGCAGCTGGATGGCTGGTTGGGTGCTGCAGATCTG
droFic1 scf7180000453800:1297323-1297573 - TATA--GTAAT-------------------TAAATCACTGT--------------T-AAGATATG------C---CTTCCTAG--ACAGT----------CAGAAA-------AA-----CTTGT-TATCGTATTTGTTTGT-TTGCTGCTAGGCA---ACACCAAGCCAACTGAGCTGCTT--------------TATTTGAAAACAATAAC------------------------------------------------------------------------------------------------------------------------------------------TGAC---------TTACATTAA------------------------------TCTC--------TATCA--A------------------------ATTTTAAA-------------AAAATGTTAAAT-T------GTTTTTAATAAAA------A--A----TGT------------------------------AAATTTTTTTGCAGGCACTGAACTCTCCAGGCAGTTGGATCGTTGGCTAGGTGCCGCTGATCTC
droKik1 scf7180000302634:805893-806175 - TATA--AAAATTA------------------TATTTGCTGT--------------T-GTGCTATGCA--GGC---AGATTCGGAAAAAGT----------GCTATG-------CG-----ATATGAATAGCTATTTGTTAGT-TAGTTGCTAAGCA---ACTCTAGGCCTGCTTTGTTGAAT--------------TAAT----A-CT---------------ATTGCTC----------------------------------------------------------TGTATGTATTACTTGCCCAAA---------------C------------------------------------------------CCAA--------------------------GCAC--------TAACAAAT------------------------G----------CCATTTAAAGATTTTATTTAAA-CAAC----TT---AACAAAGAATTCACG--TTTGGTT------------------------------TTTACATTTTCCAGGCCCTGAACTCTCCAGGCAGTTGGATGGTTGGCTGCACGCTGCCGAGCTC
droAna3 scaffold_13340:9342433-9342635 + TGTATAGTGAAC------------------CTTATCGCAGG--------------CAAGTTTTTG------C---TGTTTAAGGAGTTTT----------CTAATG---------------------AGACTGTTTGTTAAT-TTGTTGCCAGGCA---ACGCTAGGCCAACTGTGTGTAGA--------------------------A------------------------------------------------------------------------------------------------------------------------------------------AAAT--CTATATATATT-----------------TAA-TATTTTA-----------------------------------------------------------------------------------------------------------------------ACACTTT------------------------------ATTTCATTTTTTAGGCTCTGAGCTTAGCAGGCAGCTAGATCGTTGGCTTGGAGCTGCGGATCTC
droBip1 scf7180000396712:2963309-2963524 + TGTA--GTGAAC------------------CTTATCGTAGG--------------CAGGTTTTTG------C---TGTTTCAGGAGTTTT----------CGAGTG-------AATATACTCCCGTGATACTGTTTGTTGAT-TAGTTGCCAGGCA---ACGCAAGGCCAACTGTTATA-------------------------A--TA------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTATTTATATT-----------------TAACTATTCTA----------------------------------------------------------------------------------------------------------TT-----------TTATTTG------------------------------A---TTACTATTAGGCTCTGAGCTTTCCAGGCAGCTTGATCGTTGGCTTGGCGCTGCGGATCTT
dp5 2:11333647-11333829 + GAGA--ATA---T-----------------TCAATCGCTGCTATTTTGTAGGAGT----TC--TG------CTC-TGCTCTA------GCACTG-------AAC-AG------GA-----AGTGATGACGTTTATTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------CACTTGTTTTGCAGGTTCCGAGCTCTCCAGGCAGTTGGATCGTTGGCTCGGCGCCGCAGAGCTG
droPer2 scaffold_0:9182220-9182402 - GAGA--ATA---T-----------------TCAATCGCTGCTATTTTGTAGGAGT----TC--TG------CTC-TGCTCTA------GCACTG-------AAC-AG------GA-----AGTGTTGAAGTTTATTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------CACTTGTTTTGCAGGTTCCGAGCTCTCCAGGCAGTTGGATCGCTGGCTGGGCGCCGCAGAGCTG
droWil2 scf2_1100000004902:11573350-11573533 - TTTT--GT-----------------------------------------------T-ATGAGTTGTT----ATC-AGCTTGAAAT----------------------------AA-----TATGTAAA---TTTTCTTTTAT-TGTTGTCTAGGCA---ACGCAAGGCTTACTGAGTTTTC---------------GATTTAATAGCTAA--TAAT---------------------------------------------------------------------------------------------------------------------------------------TTGT---------TGACT----------------------------------------------------------------------------------------------------------------------------------------------TTAATTT------------------------------CTTTCTCCAATCAGGCTCGGAACTGTCCAGACAACTGGATCGGTGGTTATCGGCTGCTGAGTTA
droVir3 scaffold_12855:3979972-3980079 + TTAA--AATAGTT-----------------TTAATGTGATA--------------T-ATAATGAG------T---C--------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----------TTTATTT------------------------------ATTATATTTTGCAGGCTCGGATCTCTCCAGGCAATTGGATCGCTGGCTGGGTGCTGCAGACTTG
droMoj3 scaffold_6540:8287335-8287717 + TTTT--ATGAATATAATTTAATATTTTATTTCTAGTGTAAG--------------TGAGGTAGCG------C---AGTTTCATCAAAAAC----TGAAATTTAATACATTGTATT-----CAAGGA-----AACTTGTTTGTTTTGTTACTTAGCA---ACACAAAGGTTACTAGGTTTTAA----TATAAATATTCTTTTGAA--CAGGAATACCTCTTAATTTTCTCTAATATACTT-------------------GTTAAAGAT------------------AATTGTTTGTATTTCT----TTGTAG-----TAAAGAAATAATTTCCCTAAATTCCCATGAC---A--AACTGTCTAGC-----------------CAA-ATT---------------------------------------------------------------------------------------TCCCT-T------ATT----------------G--CTATTTCCGTATTAAATAACAATTAATATAATTTTATTATTATATTTTGCAGCCTCTGAACTCTCCAGACAATTGGATCGTTGGCTGGGCGCTGCCGATTTA
droGri2 scaffold_14906:6600147-6600413 + AAAA--ACCACTCAGGATAATTGTTATAGATTTA-----------------------GTGTGTTGTTAGCGC---AGTTTCGTTGAAA-C----TATAATTTGAAAT------AT-----GTTTATAATGGAATTTGTTTAT-TTGTTGCTAGGCAACAACGCAATGCCCACTAAGTTTCTA----------------------C--GC------------------------------------------------------------------------------------------------------------------------------------------AATGCTTTATTTATAT------------TATCAGG------------------------TTA-------------TGATTTTAAATATTGT-----ATTGTG---------------------------------------ATTA------TCA-----------TCAT-C---------------------------ATTACTCTTTTTTGCAGGCTCCGATCTTTCCCGGCAATTGGATCGTTGGCTGGGTGCTGCGGATCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATGTC------T---CGACTCAGCAAAAGT----------CTAATA-------AA-----CCAGGAAA---TATTTGTTTGC-TTGCTGCTAGGCA---ACGACAGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CATTTC----------------CTGAGCAGG---------------------AAATTA-------------T------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------TTA------A--ATGCGTTT------------------------------AACTTGCTTTTCAGGCGCCGAGCTCTCCGGGCAGTTGGATCGTTGGCTGGGTGCCGCCGATTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGATCGTTGGCT................1611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGGCTGGGTGCCGCC......2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTGGCTGGGTGCCGC.......2111.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGTTGGCTGGGTGCCGCC......2111.00100010000000000000
.................................................................................................................AA-----CCAGGAAA---TATTTGTTTGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
...............................................................................................................................................................................TTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................................................................................................................................2511.00101000000000000000
.........................................................GTGATGTC------T---CGACTCAGCAAAAGT----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.............................................................TGTC------T---CGACTCAGCAAAAGT----------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................GTT--------------GATTTCGAAACT....................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000010000000000
droSec2
TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T-CTCGACTCAGCGAAAGT----------CTTATA-------AA-----CCAGGAAA---TATTTGTTTGC-TTGCTGCTAGGCA---ACGAAAGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAACTC----------------CTGAGCAGG---------------------AAATTA-------------G------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------TTA------A--ATGCGTTT------------------------------AACTTGCTTTTCAGGCGCCGAGCTCTCCGGACAGTTGGATCGTTGGCTGGGTGCCGCGGATTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGTTGGCTGGGTGCCGCGGAT...2611.0010010
...............................................................................................................................A---TATTTGTTTGC-TTGCTGCTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................TGATAAG------T-CTCGACTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310100
dm3
TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T-CTCGATTTAGTGAAAGT----------CTTATA-------AA-----CCAGGAAA---TATTTGTTTGT-TTGCTGCTAGGCA---ACGACTGGCCAACTATTTTCGTT--------------GATTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------CTGAGCAGG---------------------GAATTA-------------T------------------------GGTTTACG-------------ATATTATTTATT-C------GTTA------ATA------A--ATGTATTT------------------------------ACTTTGCTTTTCAGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTGGGTGCCGCAGATTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGATCGTTGGCTGGG.............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGTTGGATCGTTGGCTGGGT............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGGTGCCGC.......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGTTGGCTGGGTGCCGC.......2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCTCGAGACAGTTGGATCGTT....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACAGTTGGATCGTTGGC.................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGCTCTCGAGACAGTTG...........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGTTGGATCGTTGGCTG...............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGCTCTCGAGACAGT.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTGGATCGTTGGCTG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................CTGC--------------T-GTGATAAG------T-CTCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACAGTTGGATCGTTGGCTGGGT............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCGAGACAGTTGGA.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........ACTT-----------------TATATCGCTGC--------------T-GTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCGAGACAGTTGG..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGATCGTTGGCTGGG.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGACAGTTGGATCGTTGGCT................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTCTCGAGACAGTTGG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGACAGTTGGATCGTTGGC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTCTCGAGACAGTTGG..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGG.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGGTGCCGCAA.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TC----------------CTGAGCAGG---------------------GAATTA-------------T------------------------GGTT.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGGTGC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTGGATCGTTGGCTGGG.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGATCGTTGGCTGGG.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................T-TTGCTGCTAGGCA---ACGACTGGCCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A---ACGACTGGCCAACTATTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTGGATCGTTGGCTGG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------ATA------A--ATGTATTT------------------------------ACTTTGC.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------CTGAGCAGG---------------------G................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................TCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------CTGAGCAGG---------------------.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAGCTCTCGAGACAGTT............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTGGCTGGGTGCCGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGGTGCCGCA......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCGAGACAGTTGGATCGTTGG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGTTGGCTGGGTGCCGA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTTCGAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------CTGA...........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTTGTTTGT-TTGCTGCTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................A---TATTTGTTTGT-TTGCTGCTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------------ACTTTGCTTTTCAGGCGC..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGATCGTTGGCTGGGT............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGTTGGCTGGGTGCCGCAG.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGATCGTTGGCT................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGTTGGATCGTTGGCT................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGTTGGATCGTTGGCTGGG.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCGCCGAGCTCTCGAGACAGT.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGCTCTCGAGACAGTTGGATCGTT....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCCGAGCTCTCGAGACA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGGCGCCGAGCTCTCGAGA.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GAAACTGAAAC------------------------------------------------------------------------------------------------------------------------------------------CAATTC----------------TA.............................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTA--ATAGCTT-----------------TATATCGCTGC--------------A-GTGATAAG------T---AGACTCGGAAAAAGT----------CTTATG-------AA-----CCTGGAAA---TATTTGTTTGT-TTGCTGCTAGGCA---ACGAAAGGCCAACTAATTCAGTT--------------TATTTCAAAGCTGAAAT----------------------CCT--------------------------------------------TCTAGGTGTTTATTTTACTTATAGAAA---------------C--------------------------CAAC------------------------------------------------ATTG--TTCCATTAACAA-----------------------------TT---ATACC----------ATTATTTATT-C------GTTA------ACC------A--TTTTATTC------------------------------AACTTGCTTTTTAGGCACCGAACTCTCCAGGCAATTAGATCGTTGGCTGGGTGCCGCGGATTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGATCGTTGGCTGGGTGC..........2211.0010000100
droYak3
TTTA--ATAACTT-----------------TATATCGCTGC--------------T-GTGATAAG------T---CGACTCGGCAATAAT----------CTTATA-------AG-----CCTGGAA---CTATTTGTTTGT-TTGCTGCTAGGCA---ACGACAGGCCAACTATTTTTAGT---------------ATTTCAAAACTGAAAC------------------------G--------------------------------------------TGCAGGTGTTTATTTTACTTACAAAAA---------------C--------------------------CAATTC----------------CTGCACAGG---------------------TTATTA----------------AAGTAATTACGGG--AACATAGGGATTACTATACC----------ACTCTGTATT-C------ATTA------AAC------A--ATTCATTC------------------------------AACTTGCTTTTCAGGTGCCGAGCTCTCCAGGCAGTTGGATCGTTGGCTGGGTGCCGCGGACCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGCTCTCCAGGCAGTTGGATC.......................26111.0011000000000011
............................................................................................................................................................................................................AACTGAAAC------------------------G--------------------------------------------TGCAGGTGTT................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAGCTCTCCAGGCAGTTG...........................2311.00100001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTGGGT............1911.00100010000000
droEug1
TTTA--ATAACT------------------TATATCACAGC--------------T-GAATGATG------T---CGATTCAGCAAAAAC----------CAAATA-------AA-----CCTGGTGATATTTTTTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATTAGTT--------------TATTTGTAA--TGAAGC------------------------------------------------------------------------------------------------------------------------------------------CTCATT----------------C-GAAAAGGATTCATTGTA----------------------------------------------------------------------------------------------------------AAT------G--ATTTGTTT------------------------------AA--TACTTTTCAGGTACTGAGCTCTCTAGACAGTTGGATCACTGGTTGGGTGCCGCGGATCTCSizeHit CountTotal NormTotal
No Reads
droBia1
ATTA--ATAGCT------------------TGTATCGCTGC--------------A-GTATTATG------T---CTATCCAGCAAAAGT----------TCAATG-------GA-----ACTGCTGATTTTTGTTGTTTGT-TTGCTGCTAGGCA---ACGCAAAGTCAACTAAGTTGGTT--------------TATT--------GAATC--------------CTCTGTTTTC---------------------------------------------------TGTTTAT-------ATTTACA---------------T------------------------------------------------TT-----AG---------------------GTACCA-------------T------------------------TATATAGA-------------ATATTATTTATTAAAACTCAATTA------TTA------TTTATGTTCCT------------------------------AA--CTTTTTTCAGGCACTGAGCTCTCCAGGCAGCTGGACCGCTGGTTGGGTGCCGCTGATCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TTTA--ATAACT------------------TGGATCGCTGC--------------T-GTATTAAG------T---CGATTCAGCAAAATT----------CTAATA-------GA-----ACTGTTGATATTTTTTGTTTAT-TTGCTGCTAGGCA---ACGCAATGCCAACTAAGTTGGTT--------------AACT--------GGAAC--------------ACTAGCATTCTTTCAATTAATTAAATTATATG-CAAAGATATCATTATTAAATGGTGTTGGTA----------------------TTGTAACTAAATCAATA---------------------------------------------------GA---------------------AATTT-------------------------ACAAGTTAAAATAAGAATTACT------------------------------------A------AGT------A--ATGATTTT------------------------------TACTTGTTTTTCAGGCACTGAGCTCTCCAGGCAGTTGGACCGCTGGTTGGGTGCCGCTGATCTCSizeHit CountTotal NormTotal
No Reads
droEle1
TTTA--ATAACT------------------TAAAGCGCTTT--------------T-CTGATTTG------T---CGAATCAGCA--AGT----------CTAATAC------CA-----ACTGGTGATATTATTTGTTTGT-TTGCTGCTAAGCA---ACGCCAGGCCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTA--ATA-----------------------TATAGCTGT--------------T-CTGACTTG------T---CGAAT-AGCG--AGT----------CTAATA-------CA-----ACTGGTGATATTATTTGTTTTT-TTGCTGCTAGGCA---ACGCTAGGCCAACTCAGTTTGCTAGAATATAAATCGCGTTTCAAAAGCTAA--CATTTTTTAGAATTATTC----------------------------------------------------------TATAATTATTTTTTTCCTTGAAGTTTGTCACAAAAACAAGACCTTCAAAACTAGAAGAGAATA--AAATGTATATC-----------------AGA-AATTATAAAACTTTATTTAGTTTA--AAATTTAAAA-----------------------------TT---ACATT---TT------TAATTTCTT-T------ATT----------------A--ATAATTTT------------------------------GTCATG-TTTTCAGGGTCAGAGCTCTCTAGGCAGCTGGATGGCTGGTTGGGTGCTGCAGATCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TATA--GTAAT-------------------TAAATCACTGT--------------T-AAGATATG------C---CTTCCTAG--ACAGT----------CAGAAA-------AA-----CTTGT-TATCGTATTTGTTTGT-TTGCTGCTAGGCA---ACACCAAGCCAACTGAGCTGCTT--------------TATTTGAAAACAATAAC------------------------------------------------------------------------------------------------------------------------------------------TGAC---------TTACATTAA------------------------------TCTC--------TATCA--A------------------------ATTTTAAA-------------AAAATGTTAAAT-T------GTTTTTAATAAAA------A--A----TGT------------------------------AAATTTTTTTGCAGGCACTGAACTCTCCAGGCAGTTGGATCGTTGGCTAGGTGCCGCTGATCTCSizeHit CountTotal NormTotal
No Reads
droKik1
TATA--AAAATTA------------------TATTTGCTGT--------------T-GTGCTATGCA--GGC---AGATTCGGAAAAAGT----------GCTATG-------CG-----ATATGAATAGCTATTTGTTAGT-TAGTTGCTAAGCA---ACTCTAGGCCTGCTTTGTTGAAT--------------TAAT----A-CT---------------ATTGCTC----------------------------------------------------------TGTATGTATTACTTGCCCAAA---------------C------------------------------------------------CCAA--------------------------GCAC--------TAACAAAT------------------------G----------CCATTTAAAGATTTTATTTAAA-CAAC----TT---AACAAAGAATTCACG--TTTGGTT------------------------------TTTACATTTTCCAGGCCCTGAACTCTCCAGGCAGTTGGATGGTTGGCTGCACGCTGCCGAGCTCSizeHit CountTotal NormTotal
No Reads
droAna3
TGTATAGTGAAC------------------CTTATCGCAGG--------------CAAGTTTTTG------C---TGTTTAAGGAGTTTT----------CTAATG---------------------AGACTGTTTGTTAAT-TTGTTGCCAGGCA---ACGCTAGGCCAACTGTGTGTAGA--------------------------A------------------------------------------------------------------------------------------------------------------------------------------AAAT--CTATATATATT-----------------TAA-TATTTTA-----------------------------------------------------------------------------------------------------------------------ACACTTT------------------------------ATTTCATTTTTTAGGCTCTGAGCTTAGCAGGCAGCTAGATCGTTGGCTTGGAGCTGCGGATCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCAGGCAGCTAGATCGTTGGCTT...............2612.002000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGTTGGCTTGGAGC..........1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCAGCTAGATCGTTGGCTT...............2411.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTAGATCGTTGGCTTGGAGCTGCA......2711.001000010
droBip1
TGTA--GTGAAC------------------CTTATCGTAGG--------------CAGGTTTTTG------C---TGTTTCAGGAGTTTT----------CGAGTG-------AATATACTCCCGTGATACTGTTTGTTGAT-TAGTTGCCAGGCA---ACGCAAGGCCAACTGTTATA-------------------------A--TA------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTATTTATATT-----------------TAACTATTCTA----------------------------------------------------------------------------------------------------------TT-----------TTATTTG------------------------------A---TTACTATTAGGCTCTGAGCTTTCCAGGCAGCTTGATCGTTGGCTTGGCGCTGCGGATCTTSizeHit CountTotal NormTotal
No Reads
dp5
GAGA--ATA---T-----------------TCAATCGCTGCTATTTTGTAGGAGT----TC--TG------CTC-TGCTCTA------GCACTG-------AAC-AG------GA-----AGTGATGACGTTTATTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------CACTTGTTTTGCAGGTTCCGAGCTCTCCAGGCAGTTGGATCGTTGGCTCGGCGCCGCAGAGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGAGCTCTCCAGGCAGTTGG..........................2312.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTCTCCAGGCAGTTGGATC.......................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCAGTTGGATCGTTGGCT................2211.0010100000000
.............................................................................................................................................................................GAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------CACTTGTTTTG.....................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGTTGGCTCGGCGCCGCAGA....2611.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGCTCTCCAGGCAGTTG...........................2111.0010100000000
.........................................................................................................................GTGATGACGTTTATTGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGATCGTTGGCTCGGCGCCGC.......2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATCGTTGGCTCGG.............1811.0011000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGTTGGATCGTTGGCTCGGC............2511.0010000000001
...............................................GTAGGAGT----TC--TG------CTC-TGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
droPer2
GAGA--ATA---T-----------------TCAATCGCTGCTATTTTGTAGGAGT----TC--TG------CTC-TGCTCTA------GCACTG-------AAC-AG------GA-----AGTGTTGAAGTTTATTGTTTGT-TTGCTGCTAGGCA---ACGCCAGGCCAACTGAATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------------------CACTTGTTTTGCAGGTTCCGAGCTCTCCAGGCAGTTGGATCGCTGGCTGGGCGCCGCAGAGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAGCTCTCCAGGCA...............................1912.002200000
.............................................................................CTCTA------GCACTG-------AAC-AG------GA-----AGTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................TATTTTGTAGGAGT----TC--TG------CTC-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................................................................................................................................................GCTGCTAGGCA---ACGCCAGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCTGGCTGGGCGCCGCA......2311.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGGCAGTTGGATCGCT....................2011.001100000
droWil2
TTTT--GT-----------------------------------------------T-ATGAGTTGTT----ATC-AGCTTGAAAT----------------------------AA-----TATGTAAA---TTTTCTTTTAT-TGTTGTCTAGGCA---ACGCAAGGCTTACTGAGTTTTC---------------GATTTAATAGCTAA--TAAT---------------------------------------------------------------------------------------------------------------------------------------TTGT---------TGACT----------------------------------------------------------------------------------------------------------------------------------------------TTAATTT------------------------------CTTTCTCCAATCAGGCTCGGAACTGTCCAGACAACTGGATCGGTGGTTATCGGCTGCTGAGTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAACTGTCCAGACAACTGG..........................2311.00110000
droVir3
TTAA--AATAGTT-----------------TTAATGTGATA--------------T-ATAATGAG------T---C--------------------------------------------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----------TTTATTT------------------------------ATTATATTTTGCAGGCTCGGATCTCTCCAGGCAATTGGATCGCTGGCTGGGTGCTGCAGACTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATCGCTGGCTGGG.............1811.001000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCAATTGGATCGCTGGC.................2111.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCTCTCCAGGCAAT.............................1811.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAATTGGATCGCTGGCT................2011.001000000001000000000000000000000000000000000000000000000000000000
droMoj3
TTTT--ATGAATATAATTTAATATTTTATTTCTAGTGTAAG--------------TGAGGTAGCG------C---AGTTTCATCAAAAAC----TGAAATTTAATACATTGTATT-----CAAGGA-----AACTTGTTTGTTTTGTTACTTAGCA---ACACAAAGGTTACTAGGTTTTAA----TATAAATATTCTTTTGAA--CAGGAATACCTCTTAATTTTCTCTAATATACTT-------------------GTTAAAGAT------------------AATTGTTTGTATTTCT----TTGTAG-----TAAAGAAATAATTTCCCTAAATTCCCATGAC---A--AACTGTCTAGC-----------------CAA-ATT---------------------------------------------------------------------------------------TCCCT-T------ATT----------------G--CTATTTCCGTATTAAATAACAATTAATATAATTTTATTATTATATTTTGCAGCCTCTGAACTCTCCAGACAATTGGATCGTTGGCTGGGCGCTGCCGATTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTGGATCGTTGGCTGGGCGC..........2511.001100000
droGri2
AAAA--ACCACTCAGGATAATTGTTATAGATTTA-----------------------GTGTGTTGTTAGCGC---AGTTTCGTTGAAA-C----TATAATTTGAAAT------AT-----GTTTATAATGGAATTTGTTTAT-TTGTTGCTAGGCAACAACGCAATGCCCACTAAGTTTCTA----------------------C--GC------------------------------------------------------------------------------------------------------------------------------------------AATGCTTTATTTATAT------------TATCAGG------------------------TTA-------------TGATTTTAAATATTGT-----ATTGTG---------------------------------------ATTA------TCA-----------TCAT-C---------------------------ATTACTCTTTTTTGCAGGCTCCGATCTTTCCCGGCAATTGGATCGTTGGCTGGGTGCTGCGGATCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:48 PM