ID:

dsi_29376

 Coordinate:

x:19815547-19815696 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.5 -16.5 -16.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAATAAATTTATGGTTATAATATAGAGGACAGAAATCAAAACATAATACCAACTGGCATTGCAAGCTTGTGATGCACTTTTGATTGGTTACTTCGGCATATGCGTGTTTTTTGTGAGCAAACTGCCTTCAAAACTTGTTTTAACTCTAGTGCGAAAGTTGGCCAACTGAAAAAAGTATTTTTCCATCTTGTACTTTGCAGCAAGTTTTGATCCAAGGGCGTGACACCGATAGCGAGCAACAGGATGCTGG
***************************************************************************..(((((.((((((((((..((((..(((.((((..((...(((...)))...)))))).)))..........))))..))).))))))).))))).****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR1275487
Male larvae		 GSM343915
embryo
........................................................................................................................................................................................................................GGCGAGAGACCGATAGCGAAC............. 21 3 5 54.80 274 189 75 1 0 2 5 1 1 0 0 0 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAGCGAACAA........... 23 3 2 39.50 79 38 29 3 0 0 3 1 1 0 1 3 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAGCGAACA............ 22 3 3 18.00 54 20 20 2 3 0 4 2 1 0 2 0 0
..........................................................................................................................................................................................................................CGAGAGACCGATAGCGAACAA........... 21 3 3 11.67 35 20 11 1 2 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAGCG................ 18 2 3 9.33 28 4 8 0 6 0 4 3 3 0 0 0 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAGCGA............... 19 2 2 9.00 18 1 1 7 3 2 0 3 0 1 0 0 0
.........................................................................................................................................................................................................................GCGAGAGACCGATAGCGAACAA........... 22 3 3 4.67 14 6 1 1 0 0 0 0 1 2 3 0 0
..........................................................................................................................................................................................................................CGAGAGACCGATAGCGAACA............ 20 3 4 4.50 18 8 5 2 2 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................GAGAGACCGATAGCGAACAA........... 20 3 14 4.21 59 41 7 5 0 0 0 1 2 0 3 0 0
.......................................................................................................................................................................................................................GGGCGAGAGACCGATAGCGAACA............ 23 3 2 4.00 8 2 4 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGGCGAGAGACCGATAGCGA............... 20 2 2 3.50 7 0 0 3 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGACCGATAGCGAACAA........... 18 2 8 3.38 27 8 0 12 3 0 0 2 1 1 0 0 0
.........................................................................................................................................................................................................................GCGAGAGACCGATAGCGAAC............. 20 3 8 2.88 23 11 8 2 0 0 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGGCGAGAGACCGATAGCGA............... 20 3 8 2.50 20 0 0 9 2 0 0 8 1 0 0 0 0
.........................................................................................................................................................................................................................GCGAGAGACCGATAGCGA............... 18 2 9 2.22 20 1 0 12 0 0 0 5 1 0 0 1 0
..........................................................................................................................................................................................................................CGAGAGACCGATAGCGAAC............. 19 3 14 2.14 30 12 6 6 3 1 1 0 1 0 0 0 0
...........................................................................ACTTTTGATTGGTTACTTCGG.......................................................................................................................................................... 21 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCGAGAGACCGATAGCGAACA............ 21 3 4 1.75 7 2 0 2 1 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................GAGACCGATAGCGAACA............ 17 2 19 1.32 25 0 0 4 18 1 0 2 0 0 0 0 0
........................................................................................................................................................................................................................GGCCTGAGACCGATAGCGAAC............. 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGCGTGACACCGATAGCGAGCA............ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGAAAGTTGGCCAACTGAAAA.............................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TTGTTTTAACTCTAGTGCGAA............................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGACCGATAGCGAACAAC.......... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCAAGTTTTGATCCAAGGGC............................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTGATCCAAGGGCGTGACACCGAT.................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTTTTGATGCAAGGGC............................... 16 1 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................TCTAGTGCGAAAGTTGGCCAACTGAA................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCCTTCAAAACTTGTTTTAACTCTAG..................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................TAATATAGAGGACAGAAATCAAAACA............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGGCGAGAGACCGATAGCGAAC............. 22 3 3 1.00 3 2 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCAAGTTTTGATCCAAGGGCGTG............................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGCAAGTTTTGATCCAAGGAC............................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGGCGAGAGACCGATAGCGAACAA........... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGTTTTGATCCAAGGGCG.............................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................AATATAGAGGACAGAAATCAAAACATAA............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................TGTGATGCACTTTTGATTGGTTACT.............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGGGCGAGAGACCGATAGCGA............... 21 3 4 0.75 3 0 0 1 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGTTTTGATCCAAGGGCGG............................. 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGGGCGAGAGACCGATAGCG................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................ATGGGCGAGAGACCGATAGCGA............... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGAGACCGATAGCGAACAA........... 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AGACCGATAGCGAACAA........... 17 2 20 0.50 10 0 0 7 0 1 0 2 0 0 0 0 0
........................................................................................................................................................................................................CAAGTTTTGATCCGAGGGT............................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CTGGTTACTTCGGCAT....................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................AAGCAAGTTTTGATCCGAGGGT............................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................CGAGACCGATAGCGAACAA........... 19 3 17 0.29 5 0 0 0 0 0 0 0 0 0 5 0 0
.....................................................................................................................................................................................................................ATGGGCGAGAGACCGATAGC................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................CGAGAGACCGATAGCGA............... 17 2 17 0.24 4 0 0 3 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TTTTGATCCGAGGGTGT............................. 17 2 10 0.20 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGGCGAGAGACCGATAGC................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................ACCGATAGCGAACAA........... 15 1 17 0.18 3 0 0 2 0 0 0 1 0 0 0 0 0
......................................................................................GTAACTTCGGAATAAGCGT................................................................................................................................................. 19 3 12 0.17 2 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................GTTTTGATGCAAGGG................................ 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GTGACCGATAGCGAGCAA........... 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GCGAGAGACCGATAGCG................ 17 2 19 0.16 3 0 0 0 0 0 0 1 0 2 0 0 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAGC................. 17 2 13 0.15 2 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................................................................ACCGATAGCGCACAA........... 15 2 20 0.15 3 0 0 0 1 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................CGAGACCGATAGCGAACA............ 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0
........................................................................................................................................................................................................................GTCGGGAGACCGATAGCGA............... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GCAACAAGCTTTGATCC..................................... 17 2 14 0.14 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTTTTGATCCGAGGGT............................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGCTTTGATCCAAG.................................. 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGCGAGAGACCGATAGCG................ 19 3 20 0.10 2 0 0 0 0 0 0 0 1 0 0 1 0
.............................................................................................................................................................................................................................GACACCGATAGCAATCAA........... 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GCGAGATACCGATAGCGA............... 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTAAGTTTTGATCCGA................................... 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCAAGCTTTGATCTAAG.................................. 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GCGAGACCGATAGCGAACA............ 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGGGCGAGAGACCGATAG.................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GGTGAGAGACCGATAGCGA............... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................CTTCGGCATCTGCGT................................................................................................................................................. 15 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATACCGATAGCGAACAA........... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTGATCCGAGGGTGT............................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGGGCGAGAGACCGATAG.................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGCGAGAGACCGATAG.................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTATTTAAATACCAATATTATATCTCCTGTCTTTAGTTTTGTATTATGGTTGACCGTAACGTTCGAACACTACGTGAAAACTAACCAATGAAGCCGTATACGCACAAAAAACACTCGTTTGACGGAAGTTTTGAACAAAATTGAGATCACGCTTTCAACCGGTTGACTTTTTTCATAAAAAGGTAGAACATGAAACGTCGTTCAAAACTAGGTTCCCGCACTGTGGCTATCGCTCGTTGTCCTACGACC
******************************************************************************..(((((.((((((((((..((((..(((.((((..((...(((...)))...)))))).)))..........))))..))).))))))).))))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................TCACGCTTTCAACCGGTTGAC.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................GGTTGACCGTAACGTTCGAAC..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................AGCCGTATACGCACAAAAAACACTCGTT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................AATCACTCATTTCACGGAAGT........................................................................................................................ 21 3 3 0.67 2 0 1 0 1 0 0
..................................TAGTTTTGGATTATGGT....................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 1 0 0 0
..............................................................................................................ATCACTCATTTCACGGAAGT........................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0
...........................CTGTCTTTAGTATTG................................................................................................................................................................................................................ 15 1 16 0.13 2 1 0 0 0 0 1
.........................................................................................GGAAGCCGTATACACACACAA............................................................................................................................................ 21 3 20 0.10 2 0 0 0 0 2 0
...............ATATGATAGCTCCTGTCTA........................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0
.............................................................................................................AATCACTCATTTCACGGAAG......................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0
...................................AGTTTTGTGTTATGG........................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:19815497-19815746 - dsi_29376 CAAT-A----AA------------------------------------TTTATGGTT--ATA---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATCA-AA--------ACATA--------ATACCAACTGGCATTGCAAGCTTGTGATGCACTTTTGATTGGTTACTTC-G------GCATA------TGCGTGTTTTTTG-------TGAGCAAACTGC---CTTCAAAACTTGT----------TTTA-ACTCTAGTGCGAAAGT-----TGGCCAACTGAAAA--AAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---GTT-TTGATCCAAGGGCGTGACACCGATA-------------G--CGAGCAACAGGATG---CTGG
droSec2 scaffold_8:3390620-3390870 - CAAT-A----AA------------------------------------TTTATGGGT--ATA---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATAA-AA--------ACATA--------ATACCAACTGGCACTGCAAGATTGTGATGCACTTTTGATTGGTTACTTCGG------GCATA------TGCGTGTTTTTTG-------TGAGCAAACTGC---CTTCAAAACTTGT----------TTTA-ACTCTAGTGCGAAAGT-----TGGCCAACTGAAAA--AAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---GTT-TTGATCTAAGGGCGTGACACCGATA-------------G--CGAGCAACAGGATG---CTGG
dm3 chrX:21082777-21083032 - TAAT-A----AA------------------------------------TTTGAGGTT--A--------------ACAGAAGGTA----------------------------------------------------CAATCAGAGGGTACACA-------------------------------ACAAACTGTCATTGCAAGCTTGTAATGCGCTTTTGATTGGTTACATAGG------GCAGA------TGCGTTTTTTTTTTTGTTTAGAAGCAAACTGC---CTTC-AAACTTGT----------TTTA-ACTCTTACGCGAAAGT-----TGGCCAACTGAAAAAAAAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGACATCGATA-------------G--CGAGCAACAGGATG---CTGG
droEre2 scaffold_4690:17613480-17613758 - CGAG----------TATGT--ACTGTAATCTGGTCGGCTAAATAT--ATTTATAAGAATATT---TTTTG-----------------------------------------------TA-----CCAAAAAGC---------------AGAAAAAATT-GC--------ACCGA--------ATACCAACTGGCACTGCAAACTCGTGATGCAGTTTTGATTGGTTACTTCGG------ACATA------TGCGCAT-----G-------CAAGCAAACTGC---TTTC-CAACTTCT----------TTTA-ACTCTTGTGCGCAAGT-----TGGCCAACTGAAAA--GTGTATTT-TCCAT-----CTTGTACTTT-CAGCA-------------------A---CTT-CTGATCCAAGGGCGTGGCATCGATG-------------G--CGAGCAACAGGATG---CTGG
droYak3 X:20254167-20254450 - GAGT-A----A-----------------------------TATGTATATTTATAAGAATAGT---TTGCA-----------------------------------------------TTCCAATG---------------CAGAGGGTGCAGAAATCA-AA--------ACATACGAGTAGTATACCAACTGGCATTGCAAACTTGTGATGCAGTTTTGATTGGTTACTTTGGGCTCGGGCATA------TGCGTATTTTTTG-------GAAGCAAACTGC---TTTC-GAACTTGT----------TTTA-ACTCTTGTGCGAAAGT-----TGGCCAACTGAAGAA---GTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGGCATTGATA-------------G--CGAGCAACAGGATG---CTGG
droEug1 scf7180000408193:404819-405083 + TAAT-A----T------------------------------------------AAG-ATATT---ATTTGAATGCCTGAAA--------------------------------------------------GTATGCAATCAAAAAGTAATGAAATCA-AA--------ATA-----------------TTGGC----CAAACTTGCCATGCACCTTCAATTGGCTACTTCTG------GCATATGCGAATGCGTATTTCTGC-------AGAGCAAACTCT---TTCC-AAACTTAT----------TCCC-TCTGTTGTGTGAAACT-----TGGCCGGCTGAAAAT-CTGTATTTCTCCTTTT---CTCGCACTTTGCAGAA-------------------A---CTT-TTGATCTAAGGGCGTGGCATCGACA-------------G--CGAGCAACAGGATG---CTGG
droBia1 scf7180000302187:449346-449611 + GAAGCTCCTAAG------------------------------------AATTAGATT--ATT---ATAAAGA-------AGGCACATTTTTCATTTTCC----------------------------------------------------GGAATCA-----------------------------GAATTGCAGGGTAAACGTGCCATGCAGTTTTGATTGGATACATCTG------GCAGA------TGCGTGTGTTTTG-------AAAGCATTCTGT---TCCT-AAACTTAT----------TTCG-ATTCATGTGCGAAAGT-----TGGCCAACTGAAAATAATATAATATTTGTTTTCTCC--CTAC-TTGCAGCA-------------------A---CTT-CTGATCCAAGGGCGTGGCACCGACA-------ACA--AT--CGAGCAACAGGATG---CTGG
droTak1 scf7180000415158:365292-365481 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTGCCATTCAGTTTTGATCGGCTACTTCTG------GCATA------TGCGTATTTTTTCC------CGAGCAATCTGT---TTTGAAAACTTAT----------TTCA-ACTCTTGTGCGAAAGT-----TGGCCAACTGAAAAC-ATGTATTATT---------CTTCTCCTTTGCAGCA--------------GCAGAA---CTT-TTGATCCAAGGGCGTGGCA-----A-------------T--CGAGCAACAGGATGCTGATGG
droEle1 scf7180000490214:835410-835639 + CAAT----------------------------------------------------------------------------------------------------------------------------------------CAGAGCGTATTGAAATCA-AA--------ACAGG--------AAACCGAATTGCTTGGTAAACATACTATGTACTTTTGACTGGT-ATTTT--------GC---------TTCGTATTTTTTC-------TCAACAAATTGTGAAAAGCTAAACTTAT----------TTTAAAAGCCTGTGTTAAAGT-----TGGCCAACTGAGAAA-ATGTATTTTT---------CTTGTACTTTTCAGTG-------------------A---CTT-TTGACAAAAGCGCGTGGCATCTATA-------------T--CGAGCAACAGGATG---CTGG
droRho1 scf7180000780082:141736-142048 + TATT-ACCCATGAGTGAGTTGAATTTAAATTGGTGTGCTAAAAGT--ATACATAAG-ATATTATTT------------------------------TTC---------------------AAAACCATAAAGC---------------AATGAAATCA-AA--------ACAGA--------ATATCAAATTGCATTGTAAACTTGCCATGCAGTTTTGATTGGTTATTTCAA------GCGAA------TGCGTATTTTTGC-------AGATATAACTGTGAATAGC-AAACTTAT----------TCTA-ACTCTTGTGTTAAACTTTATTTTGCCAACTCAAAAT-ATGTATTT--TGTT-----CCTATACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGGCACCGACA-------TCGACAT--CGAGCATCAGGATG---CTGG
droFic1 scf7180000454077:536820-537056 - TAGT-A----GA------------------------------------GTTA---GAACCTT---TTTTAAATG---AAAA--------------------------------------------------CCAGACAATCACAAACTATTG-----------------------------------AAATAGCAT-GC-AATTTCTGATCTATTTTCGATTGGTTTTTTCTG------GCATA------TTCGTACTTTTCC-------AGGACAAACTGTGCACCGC-AAACTTAT----------------CTCCTGTGTGAAAGT-----TGCCCAACTTAAAAT-GTGTATTCTT---------GCCATTC-TTGCAGAA-------------------A---CTT-TTGATCCAAGGGCA----ACCGAC------------------AACCGACAGGATG---CTGG
droKik1 scf7180000302395:448876-449130 - ATAT-A----T------CT--A--------------------------------------------------------------CATTTTT-ATTTTCCTAGACATTATTATATGACTTTTCAT--ATAAAGT---------------AATACATACATATATATATGTATATT--------CTATCGGCAATCACTGTAAACTTGCCA---------------------------------------------------------------------------------AAACTTATGTACGTACTTCTGA-GCTCTTGTCTGAAAGT-----TGGCCAACTGAAAAT---GAATATTTCCTT-----CTTT-TC-ACACATTCTTTTTTGTTGCAGGGCAGAGGCACAAAGGCGACCATGGGTGTGGCATCGAT------------------GAGCAACGGGATG---CTGG
droAna3 scaffold_13334:1155811-1155828 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGGATGTCTCTGG
droBip1 scf7180000395922:51182-51238 - TCGT-A----A------CA--A--------------------------------------------------------------CACTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGCTATGGGCTTGTCATCGAT------------------GAGCAACAGGATG---GCGA
dp5 XL_group1a:9145928-9145990 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCTATGGGCGTGGCATCGACGAGCCAGAGCCAGAGCCAGAGCCAGAGGAAGATGCTGT
droWil2 scf2_1100000004515:69904-69935 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTGGCCTCAAT------------------GAGTAGAAGGATG---TTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAT-A----AA------------------------------------TTTATGGTT--ATA---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATCA-AA--------ACATA--------ATACCAACTGGCATTGCAAGCTTGTGATGCACTTTTGATTGGTTACTTC-G------GCATA------TGCGTGTTTTTTG-------TGAGCAAACTGC---CTTCAAAACTTGT----------TTTA-ACTCTAGTGCGAAAGT-----TGGCCAACTGAAAA--AAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---GTT-TTGATCCAAGGGCGTGACACCGATA-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................ACTTTTGATTGGTTACTTC-G------G..........................................................................................................................................................................................................................................2112.00200000010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGACACCGATA-------------G--CGAGCA...............2211.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................CGAAAGT-----TGGCCAACTGAAAA--............................................................................................................................2111.00100000010000000000
......................................................................................................................................................................................................................................................................................................TTGT----------TTTA-ACTCTAGTGCGAA....................................................................................................................................................2111.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------A---GTT-TTGATCCAAGGGC.................................................2111.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGATCCAAGGGCGTGACACCGAT......................................2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................TCTAGTGCGAAAGT-----TGGCCAACTGAA................................................................................................................................2611.00100000000100000000
.......................................................................................................................................................................................................................................................................................TGC---CTTCAAAACTTGT----------TTTA-ACTCTAG..........................................................................................................................................................2711.00100000000100000000
............................................................TA---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATCA-AA--------ACA..............................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------A---GTT-TTGATCCAAGGGCGTG..............................................2411.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---GTT-TTGATCCAAGGGCG................................................1911.00100100000000000000
.............................................................A---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATCA-AA--------ACATA--------A...................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................TGTGATGCACTTTTGATTGGTTACT.....................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---GTT-TTGATCCAAGGGCGG...............................................2020.50100100000000000000
droSec2
CAAT-A----AA------------------------------------TTTATGGGT--ATA---ATATAGA-----------------------------------------------------------GG---------------ACAGAAATAA-AA--------ACATA--------ATACCAACTGGCACTGCAAGATTGTGATGCACTTTTGATTGGTTACTTCGG------GCATA------TGCGTGTTTTTTG-------TGAGCAAACTGC---CTTCAAAACTTGT----------TTTA-ACTCTAGTGCGAAAGT-----TGGCCAACTGAAAA--AAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---GTT-TTGATCTAAGGGCGTGACACCGATA-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TTGATCTAAGGGCGTGACAC..........................................2311.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------A---GTT-TTGATCTAAGGGC.................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------------------A---GTT-TTGATCTAAGG...................................................2011.0010001
dm3
TAAT-A----AA------------------------------------TTTGAGGTT--A--------------ACAGAAGGTA----------------------------------------------------CAATCAGAGGGTACACA-------------------------------ACAAACTGTCATTGCAAGCTTGTAATGCGCTTTTGATTGGTTACATAGG------GCAGA------TGCGTTTTTTTTTTTGTTTAGAAGCAAACTGC---CTTC-AAACTTGT----------TTTA-ACTCTTACGCGAAAGT-----TGGCCAACTGAAAAAAAAGTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGACATCGATA-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATA-------------G--CGAGCAACAGGATG---CTGG2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000510000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGACATCGATA-------------G--CGAGC................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGGCGTGACATCGATA-------------G--CGAGC................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
..............................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------A---CTT-TTGATCCAAGG...................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATA-------------G--CGAGCAACAGGATG---CTG.2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCG................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACATCGATA-------------G--CGAGCAACAGGA.........2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGATCCAAGGGCGTGACATCGATA-------------........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATCGATA-------------G--CGAGCAACAGGATG---C...2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATCGATA-------------G--CGAGCAACAGGA.........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCGATA-------------G--CGAGCAACAGGATG---C...2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGACATCGATA-------------G--C....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTAGAAGCAAACTGC---CTTC-AAACTT..................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CTT-TTGATCCAAGGGCGTGAC............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------A---CTT-TTGATCCAAGGGC.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTTGATTGGTTACATAGG------GT.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATA-------------G--CGAGCAACAGGATG---C...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATA-------------G--CGAGCAACAGGATG---....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTGATCCAAGGGCGTGACATCGAT......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---CTT-TTGATCCAAGGGCGTGACATCGAT......................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---CTT-TTGATCCAAGGGCGTGACATC.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------A---CTT-TTGATCCAAGGGCGTGA.............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGACATCGATA-------------........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................CACA-------------------------------ACAAACTGTCATTGCAAGCTTG............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................A---CTT-TTGATCCAAGGGCGTGACATC.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................TGT----------TTTA-ACTCTTACGCGAAAGT-----TGGC........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA-------------------A---CTT-TTGATCCAAGGGCG................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATA-------------G--CGAGCAACAGGATG---CT..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................TACTTTGCAGCA-------------------A---CTT-TTGAT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTA-ACTCTTACGCGAAAGT-----TGGCCAAC....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................GAAGGTA----------------------------------------------------CAATCAGAGGGTACACA-------------------------------ACAAAC............................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTGT----------TTTA-ACTCTTACGCGAAAGT-----............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TT--A--------------ACAGAAGGTA----------------------------------------------------CAATCAGAGGGTA.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................ACTCTTACGCGAAAGT-----TGGCCAACTGAA................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CA-------------------A---CTT-TTGATCCAAGGGCGTGA.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGGGCGTGACATCGATA-------------G--C....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTC-AAACTTGT----------TTTA-ACTCTTACGCGAAA...................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGACATCGATA-------------G--CGAGCAACAGGAT........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TA----------------------------------------------------CAATCAGAGGGTACACA-------------------------------ACAAACTGT.........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTGCAAGCTTGTAATGCGC....................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................A---CTT-TTGATCCAAGGGCGTGAC............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCAAGGGCGTGAC............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATA-------------G--CGAGCAACAGGATG---CTGG2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGG..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGACATCGATA-------------G--CGAGCAACAGGA.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCAAGGGCGTGACATCGATA-------------G--CGA..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................T--A--------------ACAGAAGGTA----------------------------------------------------CAATCAGAGGGT......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCAAGGGCGTGACATCGATA-------------G--C....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATA-------------G--CGAGCAACAGGATG---CTGG2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGC---CTTC-AAACTTGT----------TTTA-ACTCTTACGC.......................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTGATCCAAGGGCGTGACATCGA.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................TTGTACTTTGCAGCA-------------------A---CTT-TTGATC........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATCGATA-------------G--CGAGCA...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGACATCGATA-------------G--CGAG.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................A---CTT-TTGATCCAAGGGCGT...............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAGGGCGTGACATCGAT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATA-------------G--CGAGCAACAGGATG---CTT.2311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATA-------------G--CGAGCAACAGGATG---C...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTA-ACTCTTACGCGAAAGT-----TGGCC.......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACATCGATA-------------G--CGAGCAACAGGAT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGATCCAAGGGCGTGACA...........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACTTTGCAGCA-------------------A---CTT-TTGATCCAAG....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------G--CGAGCAACAGGATG---CTGG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA-------------G--CGAGCAACAGGATG---C...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droEre2
CGAG----------TATGT--ACTGTAATCTGGTCGGCTAAATAT--ATTTATAAGAATATT---TTTTG-----------------------------------------------TA-----CCAAAAAGC---------------AGAAAAAATT-GC--------ACCGA--------ATACCAACTGGCACTGCAAACTCGTGATGCAGTTTTGATTGGTTACTTCGG------ACATA------TGCGCAT-----G-------CAAGCAAACTGC---TTTC-CAACTTCT----------TTTA-ACTCTTGTGCGCAAGT-----TGGCCAACTGAAAA--GTGTATTT-TCCAT-----CTTGTACTTT-CAGCA-------------------A---CTT-CTGATCCAAGGGCGTGGCATCGATG-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATCGATG-------------G--CGAGCAACAGGA.........2411.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------A---CTT-CTGATCCAAGGGC.................................................2011.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGGCATCGATG-------------G--C....................2011.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---CTT-CTGATCCAAGGGCGT...............................................2011.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................CA-------------------A---CTT-CTGATCCAAGGGCGTGG.............................................2311.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................A---CTT-CTGATCCAAGGGCGTGGCA...........................................2311.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................A-------------------A---CTT-CTGATCCAAGGGCGTGGC............................................2311.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG-------------G--CGAGCAACAGGATG---CTG.2311.0010000010
droYak3
GAGT-A----A-----------------------------TATGTATATTTATAAGAATAGT---TTGCA-----------------------------------------------TTCCAATG---------------CAGAGGGTGCAGAAATCA-AA--------ACATACGAGTAGTATACCAACTGGCATTGCAAACTTGTGATGCAGTTTTGATTGGTTACTTTGGGCTCGGGCATA------TGCGTATTTTTTG-------GAAGCAAACTGC---TTTC-GAACTTGT----------TTTA-ACTCTTGTGCGAAAGT-----TGGCCAACTGAAGAA---GTATTTTTCCAT-----CTTGTACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGGCATTGATA-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................A---CTT-TTGATCCAAGGGCGTGGCATT.........................................25111.0011000000000011
...............................................................................................................................................................................GAGTAGTATACCAACTGGC........................................................................................................................................................................................................................................................................................1911.00100100000000
droEug1
TAAT-A----T------------------------------------------AAG-ATATT---ATTTGAATGCCTGAAA--------------------------------------------------GTATGCAATCAAAAAGTAATGAAATCA-AA--------ATA-----------------TTGGC----CAAACTTGCCATGCACCTTCAATTGGCTACTTCTG------GCATATGCGAATGCGTATTTCTGC-------AGAGCAAACTCT---TTCC-AAACTTAT----------TCCC-TCTGTTGTGTGAAACT-----TGGCCGGCTGAAAAT-CTGTATTTCTCCTTTT---CTCGCACTTTGCAGAA-------------------A---CTT-TTGATCTAAGGGCGTGGCATCGACA-------------G--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droBia1
GAAGCTCCTAAG------------------------------------AATTAGATT--ATT---ATAAAGA-------AGGCACATTTTTCATTTTCC----------------------------------------------------GGAATCA-----------------------------GAATTGCAGGGTAAACGTGCCATGCAGTTTTGATTGGATACATCTG------GCAGA------TGCGTGTGTTTTG-------AAAGCATTCTGT---TCCT-AAACTTAT----------TTCG-ATTCATGTGCGAAAGT-----TGGCCAACTGAAAATAATATAATATTTGTTTTCTCC--CTAC-TTGCAGCA-------------------A---CTT-CTGATCCAAGGGCGTGGCACCGACA-------ACA--AT--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTGCCATTCAGTTTTGATCGGCTACTTCTG------GCATA------TGCGTATTTTTTCC------CGAGCAATCTGT---TTTGAAAACTTAT----------TTCA-ACTCTTGTGCGAAAGT-----TGGCCAACTGAAAAC-ATGTATTATT---------CTTCTCCTTTGCAGCA--------------GCAGAA---CTT-TTGATCCAAGGGCGTGGCA-----A-------------T--CGAGCAACAGGATGCTGATGGSizeHit CountTotal NormTotal
No Reads
droEle1
CAAT----------------------------------------------------------------------------------------------------------------------------------------CAGAGCGTATTGAAATCA-AA--------ACAGG--------AAACCGAATTGCTTGGTAAACATACTATGTACTTTTGACTGGT-ATTTT--------GC---------TTCGTATTTTTTC-------TCAACAAATTGTGAAAAGCTAAACTTAT----------TTTAAAAGCCTGTGTTAAAGT-----TGGCCAACTGAGAAA-ATGTATTTTT---------CTTGTACTTTTCAGTG-------------------A---CTT-TTGACAAAAGCGCGTGGCATCTATA-------------T--CGAGCAACAGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droRho1
TATT-ACCCATGAGTGAGTTGAATTTAAATTGGTGTGCTAAAAGT--ATACATAAG-ATATTATTT------------------------------TTC---------------------AAAACCATAAAGC---------------AATGAAATCA-AA--------ACAGA--------ATATCAAATTGCATTGTAAACTTGCCATGCAGTTTTGATTGGTTATTTCAA------GCGAA------TGCGTATTTTTGC-------AGATATAACTGTGAATAGC-AAACTTAT----------TCTA-ACTCTTGTGTTAAACTTTATTTTGCCAACTCAAAAT-ATGTATTT--TGTT-----CCTATACTTTGCAGCA-------------------A---CTT-TTGATCCAAGGGCGTGGCACCGACA-------TCGACAT--CGAGCATCAGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TAGT-A----GA------------------------------------GTTA---GAACCTT---TTTTAAATG---AAAA--------------------------------------------------CCAGACAATCACAAACTATTG-----------------------------------AAATAGCAT-GC-AATTTCTGATCTATTTTCGATTGGTTTTTTCTG------GCATA------TTCGTACTTTTCC-------AGGACAAACTGTGCACCGC-AAACTTAT----------------CTCCTGTGTGAAAGT-----TGCCCAACTTAAAAT-GTGTATTCTT---------GCCATTC-TTGCAGAA-------------------A---CTT-TTGATCCAAGGGCA----ACCGAC------------------AACCGACAGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droKik1
ATAT-A----T------CT--A--------------------------------------------------------------CATTTTT-ATTTTCCTAGACATTATTATATGACTTTTCAT--ATAAAGT---------------AATACATACATATATATATGTATATT--------CTATCGGCAATCACTGTAAACTTGCCA---------------------------------------------------------------------------------AAACTTATGTACGTACTTCTGA-GCTCTTGTCTGAAAGT-----TGGCCAACTGAAAAT---GAATATTTCCTT-----CTTT-TC-ACACATTCTTTTTTGTTGCAGGGCAGAGGCACAAAGGCGACCATGGGTGTGGCATCGAT------------------GAGCAACGGGATG---CTGGSizeHit CountTotal NormTotal
No Reads
droAna3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGGATGTCTCTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCGT-A----A------CA--A--------------------------------------------------------------CACTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGCTATGGGCTTGTCATCGAT------------------GAGCAACAGGATG---GCGASizeHit CountTotal NormTotal
No Reads
dp5
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCTATGGGCGTGGCATCGACGAGCCAGAGCCAGAGCCAGAGCCAGAGGAAGATGCTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCTATGGGCGTGGCA...........................................1911.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAGCCAGAGGAAGATGCTGT2511.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCTATGGGCGTGGCATCGAC......................................2411.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGCCAGAGCCAGAGGAA........2130.3310000010000
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTGGCCTCAAT------------------GAGTAGAAGGATG---TTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGCCTCAAT------------------GAGTAGA.............2011.00100010

Generated: 05/19/2015 at 05:25 PM