ID:

dsi_2937

 Coordinate:

3r:4124814-4124963 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-2.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCTTTACATTATACTTTCTATATCCATTTGGGTTTTAAATACCCCTAATAATTCTAAATAATTAAGTTTTTCGTAATAAAACGATGTCAATAAATCGGACCTAAACCATTTCACTAGCTAGTAAGCTCTAACTTAATACGTAGCTGTACTCAAACCCCCGTTTAATTGATAAATAACATACGCCCTTTCCTGTCTTTCAGTAACCCAACACGTCCGCAACTGTGGTCCGCAGATGTTCCTGATCAGCCGC
****************************************************.............................((((........)))).............******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
....................................................TCTAAATAATTAAGTTTTTCGTAATA............................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................TGTCAATAAATCGGACCTAAACCATT............................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AATCGGACCTAAACCATTTAAA........................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TCCGCAACTGTGGTCCGCAGAC................ 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................GTACTCAAACCCCCGTTT....................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
...................................................TTCTAAATAATTAGGTTTTTCGTAATAA........................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TCCGCAACTGTGGTCCGCAGA................. 21 0 1 1.00 1 0 0 0 1 0 0 0
.....ACATTATACTTTCTATATCCA................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
....TACATTATACTTTCTATATCCATTTGG........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................AGCTGTGATCCGGAGATGT.............. 19 3 14 0.07 1 0 0 0 0 0 0 1

Anti-sense strand reads

CGAAATGTAATATGAAAGATATAGGTAAACCCAAAATTTATGGGGATTATTAAGATTTATTAATTCAAAAAGCATTATTTTGCTACAGTTATTTAGCCTGGATTTGGTAAAGTGATCGATCATTCGAGATTGAATTATGCATCGACATGAGTTTGGGGGCAAATTAACTATTTATTGTATGCGGGAAAGGACAGAAAGTCATTGGGTTGTGCAGGCGTTGACACCAGGCGTCTACAAGGACTAGTCGGCG
********************************************************************************************************************************************.............................((((........)))).............**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
..................................................................................................................................................................................................TAAGTCATTGGGTTCTGC...................................... 18 2 2 13.50 27 16 7 4 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGTCTACAAGGACTAGTCGGC. 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0
.....TGTAATATGAAAGATATAGGT................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TGACACCAGGCGTCTACAAGG........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................GTTTGGGGGCAAATTAACTAT............................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................TACAGTTATTTAGCCTGGATT.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................TTATTGTATGCGGGAAAGGAC.......................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................AAGGACAGAAAGTCATTGGGT........................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CGGGAAAGGACAGAAAGTCATT............................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................TTTAGCCTGGAGCTGGTAAAGT......................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TTAAGTCATTGGGTTCTGC...................................... 19 3 20 0.55 11 6 1 4 0 0 0 0 0 0
....................................................AGATTTAGTAATTCAAAAA................................................................................................................................................................................... 19 1 3 0.33 1 0 0 0 0 1 0 0 0 0
.................................................TTGAGATTTATTAGTTCAA...................................................................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 1 0 0 0
....................................................AGATTTATTAGTTCAAGAA................................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................TTTATTGGGTGCGGGAAAGC............................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0
......GTACGATGAAAGAAATAGGT................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TAAGTCATTGGGTTCTGCC..................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0
.......................................ATGGGGGTTATTAAG.................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................AAGTCATTGGGTACTGCC..................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................ATTTATTAGTTCAAAA.................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 08:30 PM