ID:

dsi_29350

 Coordinate:

x:12500180-12500329 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.6 -5.3

Flybase annnotation

three_prime_UTR [x_12499868_12500514_+]; exon [x_12499735_12500514_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCCGTATGCTTCTGAGTTCCCCCACAGAGCTCAATCAAATCAGACAGATATGTGAGACCCGTGACCTGAAGATGATGGCATATAAATGACATAATATGGCTAAAATGGACAGATACTCAATTACATTTATAAATAAATAACACGCGTAGCTAATAACTCGTTAAAGGCATGATAATCTTTCTCGTTACCTTTAATTTTAGGACTTTTGCTTCAGTACATTCCCAATAGGAAACGAAAAACGGGAGAAAAC
****************************************************((((.....((.((.....((..((((((((..........)))).))))..)))).))....)))).....****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M025
embryo
 M024
male body		 M053
female body
....................................................TGAGACCCGTGACCTGAAGATGATGGCA.......................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................AAAATGGACAGATACTCAATTAC.............................................................................................................................. 23 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0
................................................................................................TGGCTAAAATGGACAGATACTCAATTAC.............................................................................................................................. 28 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
....................................................................................................TAAAATGGACAGATACTCAATTACATT........................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................TATGTGAGACCCGTGACCTGAAGATGA............................................................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0
.................TCCCCCACAGAGCTCAATCAAATCAGA.............................................................................................................................................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...................................................................................................CTAAAATGGACAGATACTCAATTAC.............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
TCCGTATGCTTCTGAGTTCCCCCACA................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTAATTTTAGGACTTTTGCTTCAGT................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................CAAATCAGACAGATCTGTGTTA................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................ATGTGAGACCCGTGACCTGAAGATGAAA............................................................................................................................................................................. 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................GAGACCCGTGACCTGAAGATGATGGC........................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................TCCCCCACAGAGCTCAATCAAATCAGAA............................................................................................................................................................................................................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTTTCTCGTTACCTTTAATTTTAGGAC............................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................TGAAGATGATGGCATATAAATGACA............................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................TAAAATGGACAGATACTCAATTACAT............................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................TGAGACCCGTGACCTGAAGATGAT.............................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................TATGTGAGACCCGTGACCTGAAGATGATA............................................................................................................................................................................. 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TACATTTATAAATAAATAACACGCGTAGC.................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TAATATGGCTAAAATGGACAGATAC...................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................ATCCGTGACCTGAAGATGATGGCAT......................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTAATTTTAGGACTTTTGCTTCAGT................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTCTCGTTACCTTTAATTTTAGGAC............................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................ACAGATATGTGAGACCCGTGA.......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................ACAGATATGTGAGACCCGT............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................CAAATCAGACAGATTTGTGTGA................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................CATAATATGGCTAAAATGGACAGATACTC.................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCCCAATAAGAAACGAAAAACGGGAGA.... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................AATCAGACAGATATGTGAGACCCGTGA.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TGACATAATATGGCTAAAATGGACAGAAA....................................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................TTATAAATAAATAACACGCGTAGCTAA................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................TATGTGAGACCCGTGACCTGAAGAT................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................ACTTTTGCTTCAGTACATTCCCAATAAGA.................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............GAGTTCCCCCACAGAGCTTA......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
TCCGTATGCTTCTGAGTTCCCCCACAGA.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................TGAGACCCGTGACCTGAAGATGATGGC........................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AATTTTAGGACTTTTGCTTC...................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................CTTTCTCGTTACCTTTAATTTTAGGACT.............................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................TTAAAGGCATGATAATCTTTCTCGTTA............................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
.......................................TCAGACAGATATGTGAGACCCGTGACCT....................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................TATGGCTAAAATGGACAGATACTCAAT................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................AAATGGACAGAATCTCAATTGCA............................................................................................................................. 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................AAATGGACAGAATCTCAAT................................................................................................................................. 19 2 7 0.29 2 0 0 0 0 0 0 0 2 0 0
....................................................................................................TTAAATGGACAGAATCTCAATT................................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGCATACGAAGACTCAAGGGGGTGTCTCGAGTTAGTTTAGTCTGTCTATACACTCTGGGCACTGGACTTCTACTACCGTATATTTACTGTATTATACCGATTTTACCTGTCTATGAGTTAATGTAAATATTTATTTATTGTGCGCATCGATTATTGAGCAATTTCCGTACTATTAGAAAGAGCAATGGAAATTAAAATCCTGAAAACGAAGTCATGTAAGGGTTATCCTTTGCTTTTTGCCCTCTTTTG
******************************************************************************************************************************((((.....((.((.....((..((((((((..........)))).))))..)))).))....)))).....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.................AGGGGGTGTGTCGAGT......................................................................................................................................................................................................................... 16 1 5 1.80 9 9 0 0 0 0
.....................................................................................................................................................................................................ATCCTGAAAACGAAGTCATGT................................ 21 0 1 1.00 1 1 0 0 0 0
.......................TGTCTCTAGTTTGTTTAGTCT.............................................................................................................................................................................................................. 21 2 2 0.50 1 0 1 0 0 0
.................AGGGGGTGTGTCGAG.......................................................................................................................................................................................................................... 15 1 11 0.36 4 4 0 0 0 0
.................AGGGGGTGTGTCGAGTA........................................................................................................................................................................................................................ 17 2 20 0.30 6 6 0 0 0 0
........................................................TGGGCACTGGACAGCTA................................................................................................................................................................................. 17 2 5 0.20 1 0 1 0 0 0
.......................................................................................................................................ATATTGTGCTCACCGATTAT............................................................................................... 20 3 5 0.20 1 0 0 1 0 0
..................GGGGGTGTGTCGAGT......................................................................................................................................................................................................................... 15 1 15 0.13 2 2 0 0 0 0
.................AGGGGGTGTGTCGAGTATG...................................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................AGCAATGGCTATTAAAATG.................................................. 19 3 18 0.06 1 0 0 0 1 0
..................................................ACACTCTGGGTACTCG........................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1
.............................................................................................................................................................GGCCATTTCCGTACT.............................................................................. 15 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12500130-12500379 + dsi_29350 T-------CCGTATGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TG-----------ACATAATATGGCTAAAATGGA--CAGA-TACTCAATTACATTTATA---AATAAATAACACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ATA----GG--------AAACGAA-AAACGGGAGAAAAC
droSec2 scaffold_21:911304-911553 + T-------TCGTATGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TG-----------ACATAATATGGCTAAAATGGA--CAGA-TACTCAATTACATTTATA---AATAAATAACACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ATA----AG--------AAACGAA-AAACGGGAGAAAAC
dm3 chrX:13156132-13156385 + T-------TCGTGTGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TGACATAAT---------ATATGGCTTAAATGGA--CAGA-TACTCAATTACATTTATA---AATAATTAACACGCGT-----------------------------AGC--CAC--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGACT-TT---------TGCTTCAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGAGAAAAC
droEre2 scaffold_4690:13717809-13718057 - T-------TCCTGTGTTTCTGAGTTC--------GCCC-----C-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-ATA----TG-----------GCATAAAACAGC-TAAATGGA--AAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TATCTCGTTAT--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ACA----AAAA----ATAAACGAA-TAGCGGGAGAAAAC
droYak3 X:7433036-7433302 + T-------TCCTGTGTTTCTGAGTTC-------CCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GATGATGGCA-------TAT-ATA----TG---------TGGCATAAAACAGC-TAAATGGA--CAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TAACTCGTTAA--------------------------------------------------------------------------------------------AA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACTTTT---------TGCTTCAGTGTAT-----TC--AGTAC-----------------AAAA--------------------------------------------------ACA----AAAAACGTATGAACGAAAAAACTGGAGAAAAC
droEug1 scf7180000409110:1623137-1623361 + T-------TCCTGTGTTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-T----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TT----------------------ATATAATACAGC-AATATGGA--CAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TAAATCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------TGCTTCAGTACAT-----TTTCA---------------------------------------------------------------------------CA-------------------------GCTGGAGAAAAC
droBia1 scf7180000302421:1695676-1695905 + G-------TCCTATATTTCCGAGTTCT------CCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---AGGCA-------TAT-TAA-----------------GCGTAATGCGGC-AACGTGGA--CAGA-TACTCAATTAAATTTATA----A----TGACACGCGT-----------------------------AGC--TAC--TAACTCGTTAC--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTC-TAATTTTAGGA---TT---------CGCTTCAGTACAT-----TCTCA---------------------------------------------------------------------------GA-------------------------GCGGGAGAAAAC
droTak1 scf7180000414113:82552-82798 + T-------TCCCATGTTCCCGAGTTCTCGTTCGCCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAG----------------GA---TGG-ATAGAGCATGT-TA------G-----------GCGTAATACAGC-TAAATGGA--CAGA-TACTCAATTACATTTATAGCAAA----AGACACGCGT-----------------------------AGC--TAAA-TAACTCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------CGCTTCAGTACAT-----TCTCA---------------------------------------------------------------------------GA-------------------------GCGGCAGAAAAC
droEle1 scf7180000491001:1877798-1878028 - T-------TCCTGTGTTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GT---TGGCA-------TAT-AAA-----------------GCATAATACGGC-AGAGTGGA--CAGA-TACTCAATTACATTTATA---AA----TAACATGCGT-----------------------------AGC--TGCT-AAACTCGTTAT--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGA---AT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------GA-------------------------TCGGAAGAAAAC
droRho1 scf7180000779333:943345-943571 + T-------TCCTGTGTTTCTGAGTTC--------CCCC-----C-CAGA--------------------------------------------GCACAATCAA-----ATC-T----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GT---TGGCA-------TA---A------G-----------GCATATTACAGC-AGAATGGA--GAGA-TACTCAATTACATTTATA---AA----TAACATGCGT-----------------------------AGC--TGC--TAACTCGTTAT--------------------------------------------------------------------------------------------TA------------------------------------------GCATAATAATCTTTCTCGTTACCTT-TAATTTTAGGA---AT---------AACTTCAGTACAT-----TTCCA---------------------------------------------------------------------------GA-------------------------TTGAAAGAAAAC
droFic1 scf7180000454050:1132135-1132392 + T-------TCCCGTGTTTCTGAAAAA--------CCCC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-TCGAATCAGA-ATCAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA----GGCATATGGCATAT---------GACATTATAATGACATG--ACGGC-AGAATGGAAGCAGA-TACTCAATTACATTTATA---AATA--TAGCACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGC---CT---------TGCTTGAGTATAT-----TCCCA---------------------------------------------------------------------------AA-----------------------ATGTGGGAGAAAAC
droKik1 scf7180000302610:613267-613556 - T-------TCCTGTGCTTCTGACTTC--------CCCC-----A-CAGA--------------------------------------------GCACTATCAA-----ATC-T----------GACAGA---------------------TATGTGAGATCCG-TGACCTGAAGAA--GGAGTGAAGAAGGTGG---TG----------AG--AGAGCAGAGGCA------GGGC-----------------GT--GAGA-TACTCAATTACATTTATA---AA----TAACACGTGT-----------------------------AGC--TGGCAAAACTCGTTAA--------------------------------------------------------------------------------------------TA-TAT-ATATA--T----ACACTATATATATATATATGTAATAGCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------CGCTTCGGAAA--CGTAT--------------------------------TATAA-------------------TAT--------------GATATCAGAG----AG--------AGAG--C-A---GAGTAAGAAC
droAna3 scaffold_13117:4062514-4062777 + T--------CCTGTAATTCTGAGTTC--------TCCCGTTCTG-AGGA--------------------------------------------GCACAATCAA-----ATC-GGAAATCAGAAATCGGAAATCGGAAATGTGAGATA---TATGTGAGACCTGGGGACCTGAAGATTT--CACAAAAAAAGAGA---AG----------AG-AAGAG--------------------AAGAAAGC-TAGA------CAGA---------------------------------------------------------------AGATAGTCTCAA--T-AATCTAAAA--------------------------------------------------------------------------------------------TA------------------------------------------CCATGATA-TCCTTATCGTTGATTT-TTATTTTAGGA---CT---------TCCTTTCGGATGA-----TCC-AGGATATCG------------------CTTTGAAGGAAGATAA--------------------------------------------------------A-AGCCAGAAGAAAAC
droBip1 scf7180000396383:323752-324049 - TACGTAATTCCCGTGTTTCTGAGTTCC------CGTAC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-G----------GAGAGA--T---ATATGTGAGATATAGTATGTGAGACCCG-GGACCTGAAGAT-------------------------------------------------------------------------------------------------TTCACA---AAGAAGAAAGAAGCGCTGGAGAGCGAGAGAGCTGTTACAGAAGATAGTCTCAA--TAAC-CAATAA--------------------------------------------------------------------------------------------TA------------------------------------------GAATGATA-TCCTTATCGTTGACTT-TAATTTTAGGA---TCCAGGATATCTCCTTCAGGA--------TCC-AGGATATCGCTTGGCAGACACCGAAAGCCACAA-------------------GAA--------------AACACCAAAA----AA--------AAAAGAAAATACGAGAAAAAAA
dp5 XL_group1a:821042-821271 - T-------TCCCGCGT-CCTGTG--C--------CCCA-----ACCAGA--------------------------------------------GCGCAATCAA-----ATC------------GACAGA---------------------TATGTGAGACCCG-TGACCTGATAATGG---------C------TGATGG-----AG---------------------------C-----------------GA--AAGATTATTCAATTATATGT-------------------CAT-----------------------------GGC--CGTC-TAACTCGTTAA--------------------------------------------------------------------------------------------TAGCATAATATA--T----TCACTCT-CGTTCGTTTTGGCAGCAGGAGGACAATCTTTCTCGTTATTAT-TGAT--TAGGC-------------------------------------------------------CGCAGAGGCCACGGAGGAAGAGAT--------------------------------------------------------------GAGCTTGAAA
droPer2 scaffold_26:933741-934020 - T-------TCCCGCGT-CCTGTG--C--------CCCA-----ACCAGA--------------------------------------------GCGCAATCAA-----ATC------------GACAGA---------------------TATGTGAGACCCG-TGACCTGATAATGG---------C------TGATGG-----AG---------------------------C-----------------GA--AAGATTATTCAATTATATAT-------------------CAT-----------------------------GGC--CGTC-TAACTCGTTAA--------------------------------------------------------------------------------------------TAGCATAATATA--T----TCACTCT-CGTTCGTTTTGGCAGCAGGAGGACAATCTTTCTCGTTATTAT-TGATT--AGGC-------------------------------------------------------CGCAGAGGCCACGGAGGAAGAGATGAGCTTGAAAAATAGGATCTTTGTGAAATACCTATA----AG--------ACAGGCTTATCGATACATACAT
droVir3 scaffold_13042:1787810-1787838 + --------------------------------------------------------------------------------------------------------------C-A----------AACAGA---------------------AATGTGAGACCTG-TGACCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:1701052-1701243 + C-------CTA--ACCTTCAATG--G--------CGAA-----AAAAAAAAAACCAAACAAACAACAAAAGAAAAAGAACAACCTTCCACTAAACT---TCGATCTGTAGCAA----------AACAGA---------------------AATGTGAGACCTG-TGACCTGATTTG--GCATTGCGGC---------TGGTA--T----TAC-AAA----TA-----------ACATAATCCTATTTATATATA--AATA-CAAACATACACATATATA---TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA
droGri2 scaffold_14853:3176303-3176655 + T-------TCCCGTGCTATTG----T--------CGAC-----ATAGAA--------------------------------------------GCACGTTCGATCTGTATG-C----------GACAGA---------------------TATGTGAGACCTG-TGACCTGATTTG--GTATTGCGGC------TGGTATTA-------TAA-AAA----TT-----------ACATATTC----------GTA--CATA-TA------------T-------------------TAT-----------------------------TAC--AATC-AATACTA----ATCTCAATTGCGATAAACTATACCGATAAACGATAAACGATAAACACGTATATATAGCATACATTCGTAGTTGCATTGTATTTGTTGGTTAACAATACAAAATGATTTCTTTTTTTTT-CG-TCGTCTTGTTGATAAATGAATATTTTC---TGTC-TTAT-TAATCTTAAGAAT--T---------TTCCTCAGAAA--TAGAA--------CACCA-------------------------------------------------------------------ATATTTAGG--------AGACGTC-AATCAGAA---GAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T-------CCGTATGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TG-----------ACATAATATGGCTAAAATGGA--CAGA-TACTCAATTACATTTATA---AATAAATAACACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ATA----GG--------AAACGAA-AAACGGGAGAAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................TGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000030000000000
......................................................................................................................................................................................................................................................AAAATGGA--CAGA-TACTCAATTAC................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.................................................................................................................................................................................................................................................TGGCTAAAATGGA--CAGA-TACTCAATTAC................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000001010000000
.....................................................................................................................................................................................................................................................TAAAATGGA--CAGA-TACTCAATTACATT.............................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAAGAT----------------GA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000010000010000
........................TC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
....................................................................................................................................................................................................................................................CTAAAATGGA--CAGA-TACTCAATTAC................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
T-------CCGTATGCTTCTGAGTTC--------CCCC-----A-CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TAATTTTAGGACT-TT---------TGCTTCAGT................................................................................................................................2511.00100000001000000000
.......................................................................................................................................................ATGTGAGACCCG-TGACCTGAAGAT----------------GA---AA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...........................................................................................................................................................GAGACCCG-TGACCTGAAGAT----------------GA---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
........................TC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCTCGTTACCTT-TAATTTTAGGAC......................................................................................................................................................2811.00100000000010000000
.........................................................................................................................................................................TGAAGAT----------------GA---TGGCA-------TAT-AAA----TG-----------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.....................................................................................................................................................................................................................................................TAAAATGGA--CAGA-TACTCAATTACAT..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................TGAGACCCG-TGACCTGAAGAT----------------GA---T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
.............................................................................................................................................................................................................................................................................TACATTTATA---AATAAATAACACGCGT-----------------------------AGC--....................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
............................................................................................................................................................................................................................................TAATATGGCTAAAATGGA--CAGA-TAC........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TAATTTTAGGACT-TT---------TGCTTCAGT................................................................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGTTACCTT-TAATTTTAGGAC......................................................................................................................................................2511.00100000001000000000
............................................................................................................................ACAGA---------------------TATGTGAGACCCG-TGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................ACAGA---------------------TATGTGAGACCCG-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..........................................................................................................................................................................................................................................CATAATATGGCTAAAATGGA--CAGA-TACTC......................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................................................A-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................TTATA---AATAAATAACACGCGT-----------------------------AGC--TAA--...............................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAAGAT----------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
T-------CCGTATGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..........................................................................................................................................................TGAGACCCG-TGACCTGAAGAT----------------GA---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAGGACT-TT---------TGCTTC...................................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTCGTTACCTT-TAATTTTAGGACT-....................................................................................................................................................2811.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTA.......................................................................................................................................................................2711.00100010000000000000
.............................................................................................................TC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...............................................................................................................................................................................................................................................TATGGCTAAAATGGA--CAGA-TACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
T-------TCGTATGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TG-----------ACATAATATGGCTAAAATGGA--CAGA-TACTCAATTACATTTATA---AATAAATAACACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ATA----AG--------AAACGAA-AAACGGGAGAAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AG--------AAACGAA-AAACGGGAG.....1911.0010001
.........CGTATGCTTCTGAGTTC--------CCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
T-------TCGTGTGCTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TGACATAAT---------ATATGGCTTAAATGGA--CAGA-TACTCAATTACATTTATA---AATAATTAACACGCGT-----------------------------AGC--CAC--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGACT-TT---------TGCTTCAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGAGAAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................ACCCG-TGACCTGAAGAT----------------GA---TGGCA-------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
.................................................................................................................................................................CG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GA---------------------TATGTGAGACCCG-TGACCTGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................A----------GACAGA---------------------TATGTGAGACCCG-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGA......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGAGAA...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGACT-TT---------TGCTTCAGTAAAT-----TCTCA---------------------------------------------------------------------------A......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAAGAT----------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................AC--TAACTCGTTAA--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATC.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATAATCTTTCTCGT.........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TT---------TGCTTCAGTAAAT-----TCTCA---------------------------------------------------------------------------AT.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GCTTAAATGGA--CAGA-TACTCAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAAGAT----------------GA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTTAGGACT-TT---------TGCTTC...................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAA.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTTAAATGGA--CAGA-TACTCAATTAC................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................A---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GAGACCCG-TGACCTGAAGAT----------------GA---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................GACAGA---------------------TATGTGAGACCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................TGAGACCCG-TGACCTGAAGAT----------------GA---TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................TAACACGCGT-----------------------------AGC--CAC--TAACTCGT.......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TATGGCTTAAATGGA--CAGA-TACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCGTGTGCTTCTGAGTTC--------CCCC-----A-CAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................CCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAGA-TACTCAATTACATTTATA---AA....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTTAGGACT-TT---------TGCTTCAGT................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTAACACGCGT-----------------------------AGC--CAC--TAACTCGT.......................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CATAAT---------ATATGGCTTAAATGGA--CAGA-TAC........................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................ATTACATTTATA---AATAATTAACACGCGT-----------------------------A........................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GA--CAGA-TACTCAATTACATTTATA---AAT...................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGAGAA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTAGGACT-TT---------TGCTTCAGT................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CCCG-TGACCTGAAGAT----------------GA---TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGTAAAT-----TCTCA---------------------------------------------------------------------------ATA----................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTAAATGGA--CAGA-TACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........GTGTGCTTCTGAGTTC--------CCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........TCGTGTGCTTCTGAGTTC--------CCCC-----A-C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGG.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GACCTGAAGAT----------------GA---TGGCA-------TAT-AAA----TGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GACCCG-TGACCTGAAGAT----------------GA---TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TCTCA---------------------------------------------------------------------------ATA----GG--------AAACGAAAAAACGGGAGAA...3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GAGACCCG-TGACCTGAAGAT----------------GA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................A-------TAT-AAA----TGACATAAT---------AT................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CCCG-TGACCTGAAGAT----------------GA---TGGCA-------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................TC-A----------GACAGA---------------------TATGTGAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................A----------GACAGA---------------------TATGTGAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
T-------TCCTGTGTTTCTGAGTTC--------GCCC-----C-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TAT-ATA----TG-----------GCATAAAACAGC-TAAATGGA--AAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TATCTCGTTAT--------------------------------------------------------------------------------------------AG------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACT-TT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------ACA----AAAA----ATAAACGAA-TAGCGGGAGAAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
T-------TCCTGTGTTTCTGAGTTC-------CCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GATGATGGCA-------TAT-ATA----TG---------TGGCATAAAACAGC-TAAATGGA--CAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TAACTCGTTAA--------------------------------------------------------------------------------------------AA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGACTTTT---------TGCTTCAGTGTAT-----TC--AGTAC-----------------AAAA--------------------------------------------------ACA----AAAAACGTATGAACGAAAAAACTGGAGAAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................A---AA----TAACACGCGT-----------------------------AGC--TAC--T..............................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................................................................................................................................................TATGTGAGACCCG-TGACCTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
................................................................................................................................................................................................................................................................................................TAACACGCGT-----------------------------AGC--TAC--TAACTCGT.......................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................AA-----ATC-A----------GACAGA---------------------TATGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................................................TC-A----------GACAGA---------------------TATGTGAGACCCG-TGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
droEug1
T-------TCCTGTGTTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-T----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---TGGCA-------TT----------------------ATATAATACAGC-AATATGGA--CAGA-TACTCAATTACATTTATA---AA----TAACACGCGT-----------------------------AGC--TAC--TAAATCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------TGCTTCAGTACAT-----TTTCA---------------------------------------------------------------------------CA-------------------------GCTGGAGAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
G-------TCCTATATTTCCGAGTTCT------CCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA---AGGCA-------TAT-TAA-----------------GCGTAATGCGGC-AACGTGGA--CAGA-TACTCAATTAAATTTATA----A----TGACACGCGT-----------------------------AGC--TAC--TAACTCGTTAC--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTC-TAATTTTAGGA---TT---------CGCTTCAGTACAT-----TCTCA---------------------------------------------------------------------------GA-------------------------GCGGGAGAAAACSizeHit CountTotal NormTotal
No Reads
droTak1
T-------TCCCATGTTCCCGAGTTCTCGTTCGCCCCC-----A-CAGA--------------------------------------------GCTCAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAG----------------GA---TGG-ATAGAGCATGT-TA------G-----------GCGTAATACAGC-TAAATGGA--CAGA-TACTCAATTACATTTATAGCAAA----AGACACGCGT-----------------------------AGC--TAAA-TAACTCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------CGCTTCAGTACAT-----TCTCA---------------------------------------------------------------------------GA-------------------------GCGGCAGAAAACSizeHit CountTotal NormTotal
No Reads
droEle1
T-------TCCTGTGTTTCTGAGTTC--------CCCC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-A----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GT---TGGCA-------TAT-AAA-----------------GCATAATACGGC-AGAGTGGA--CAGA-TACTCAATTACATTTATA---AA----TAACATGCGT-----------------------------AGC--TGCT-AAACTCGTTAT--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGA---AT---------TGCTTCAGTACAT-----TCCCA---------------------------------------------------------------------------GA-------------------------TCGGAAGAAAACSizeHit CountTotal NormTotal
No Reads
droRho1
T-------TCCTGTGTTTCTGAGTTC--------CCCC-----C-CAGA--------------------------------------------GCACAATCAA-----ATC-T----------GACAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GT---TGGCA-------TA---A------G-----------GCATATTACAGC-AGAATGGA--GAGA-TACTCAATTACATTTATA---AA----TAACATGCGT-----------------------------AGC--TGC--TAACTCGTTAT--------------------------------------------------------------------------------------------TA------------------------------------------GCATAATAATCTTTCTCGTTACCTT-TAATTTTAGGA---AT---------AACTTCAGTACAT-----TTCCA---------------------------------------------------------------------------GA-------------------------TTGAAAGAAAACSizeHit CountTotal NormTotal
No Reads
droFic1
T-------TCCCGTGTTTCTGAAAAA--------CCCC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-TCGAATCAGA-ATCAGA---------------------TATGTGAGACCCG-TGACCTGAAGAT----------------GA----GGCATATGGCATAT---------GACATTATAATGACATG--ACGGC-AGAATGGAAGCAGA-TACTCAATTACATTTATA---AATA--TAGCACGCGT-----------------------------AGC--TAA--TAACTCGTTAA--------------------------------------------------------------------------------------------TA------------------------------------------GCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGC---CT---------TGCTTGAGTATAT-----TCCCA---------------------------------------------------------------------------AA-----------------------ATGTGGGAGAAAACSizeHit CountTotal NormTotal
No Reads
droKik1
T-------TCCTGTGCTTCTGACTTC--------CCCC-----A-CAGA--------------------------------------------GCACTATCAA-----ATC-T----------GACAGA---------------------TATGTGAGATCCG-TGACCTGAAGAA--GGAGTGAAGAAGGTGG---TG----------AG--AGAGCAGAGGCA------GGGC-----------------GT--GAGA-TACTCAATTACATTTATA---AA----TAACACGTGT-----------------------------AGC--TGGCAAAACTCGTTAA--------------------------------------------------------------------------------------------TA-TAT-ATATA--T----ACACTATATATATATATATGTAATAGCATGATAATCTTTCTCGTTACCTT-TAATTTTAGGA---TT---------CGCTTCGGAAA--CGTAT--------------------------------TATAA-------------------TAT--------------GATATCAGAG----AG--------AGAG--C-A---GAGTAAGAACSizeHit CountTotal NormTotal
No Reads
droAna3
T--------CCTGTAATTCTGAGTTC--------TCCCGTTCTG-AGGA--------------------------------------------GCACAATCAA-----ATC-GGAAATCAGAAATCGGAAATCGGAAATGTGAGATA---TATGTGAGACCTGGGGACCTGAAGATTT--CACAAAAAAAGAGA---AG----------AG-AAGAG--------------------AAGAAAGC-TAGA------CAGA---------------------------------------------------------------AGATAGTCTCAA--T-AATCTAAAA--------------------------------------------------------------------------------------------TA------------------------------------------CCATGATA-TCCTTATCGTTGATTT-TTATTTTAGGA---CT---------TCCTTTCGGATGA-----TCC-AGGATATCG------------------CTTTGAAGGAAGATAA--------------------------------------------------------A-AGCCAGAAGAAAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................GACCTGGGGACCTGAAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
........................................................................................................................................................................................AAAAAAGAGA---AG----------AG-AAGAG--------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................................ACAATCAA-----ATC-GGAAATCAGAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................AAGAGA---AG----------AG-AAGAG--------------------AAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1960.332000200
............................................................................................................................................................................................AAGAGA---AG----------AG-AAGAG--------------------AAG................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111000100
..............................................................................................................................................................................................GAGA---AG----------AG-AAGAG--------------------AAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................17120.081000100
.............................................................................................................................................................................................AGAGA---AG----------AG-AAGAG--------------------AAG................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.081000100
droBip1
TACGTAATTCCCGTGTTTCTGAGTTCC------CGTAC-----A-CAGA--------------------------------------------GCACAATCAA-----ATC-G----------GAGAGA--T---ATATGTGAGATATAGTATGTGAGACCCG-GGACCTGAAGAT-------------------------------------------------------------------------------------------------TTCACA---AAGAAGAAAGAAGCGCTGGAGAGCGAGAGAGCTGTTACAGAAGATAGTCTCAA--TAAC-CAATAA--------------------------------------------------------------------------------------------TA------------------------------------------GAATGATA-TCCTTATCGTTGACTT-TAATTTTAGGA---TCCAGGATATCTCCTTCAGGA--------TCC-AGGATATCGCTTGGCAGACACCGAAAGCCACAA-------------------GAA--------------AACACCAAAA----AA--------AAAAGAAAATACGAGAAAAAAASizeHit CountTotal NormTotal
No Reads
dp5
T-------TCCCGCGT-CCTGTG--C--------CCCA-----ACCAGA--------------------------------------------GCGCAATCAA-----ATC------------GACAGA---------------------TATGTGAGACCCG-TGACCTGATAATGG---------C------TGATGG-----AG---------------------------C-----------------GA--AAGATTATTCAATTATATGT-------------------CAT-----------------------------GGC--CGTC-TAACTCGTTAA--------------------------------------------------------------------------------------------TAGCATAATATA--T----TCACTCT-CGTTCGTTTTGGCAGCAGGAGGACAATCTTTCTCGTTATTAT-TGAT--TAGGC-------------------------------------------------------CGCAGAGGCCACGGAGGAAGAGAT--------------------------------------------------------------GAGCTTGAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................AATTATATGT-------------------CAT-----------------------------GGC--CGTC-TAAC...........................................................................................................................................................................................................................................................................................................................................2411.0010001000000
.............................................................................................................................................................................AATGG---------C------TGATGG-----AG---------------------------C-----------------GA--AAG.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
droPer2
T-------TCCCGCGT-CCTGTG--C--------CCCA-----ACCAGA--------------------------------------------GCGCAATCAA-----ATC------------GACAGA---------------------TATGTGAGACCCG-TGACCTGATAATGG---------C------TGATGG-----AG---------------------------C-----------------GA--AAGATTATTCAATTATATAT-------------------CAT-----------------------------GGC--CGTC-TAACTCGTTAA--------------------------------------------------------------------------------------------TAGCATAATATA--T----TCACTCT-CGTTCGTTTTGGCAGCAGGAGGACAATCTTTCTCGTTATTAT-TGATT--AGGC-------------------------------------------------------CGCAGAGGCCACGGAGGAAGAGATGAGCTTGAAAAATAGGATCTTTGTGAAATACCTATA----AG--------ACAGGCTTATCGATACATACATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
--------------------------------------------------------------------------------------------------------------C-A----------AACAGA---------------------AATGTGAGACCTG-TGACCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
C-------CTA--ACCTTCAATG--G--------CGAA-----AAAAAAAAAACCAAACAAACAACAAAAGAAAAAGAACAACCTTCCACTAAACT---TCGATCTGTAGCAA----------AACAGA---------------------AATGTGAGACCTG-TGACCTGATTTG--GCATTGCGGC---------TGGTA--T----TAC-AAA----TA-----------ACATAATCCTATTTATATATA--AATA-CAAACATACACATATATA---TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................CAATG--G--------CGAA-----AAAAAAAAAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141100000
droGri2
T-------TCCCGTGCTATTG----T--------CGAC-----ATAGAA--------------------------------------------GCACGTTCGATCTGTATG-C----------GACAGA---------------------TATGTGAGACCTG-TGACCTGATTTG--GTATTGCGGC------TGGTATTA-------TAA-AAA----TT-----------ACATATTC----------GTA--CATA-TA------------T-------------------TAT-----------------------------TAC--AATC-AATACTA----ATCTCAATTGCGATAAACTATACCGATAAACGATAAACGATAAACACGTATATATAGCATACATTCGTAGTTGCATTGTATTTGTTGGTTAACAATACAAAATGATTTCTTTTTTTTT-CG-TCGTCTTGTTGATAAATGAATATTTTC---TGTC-TTAT-TAATCTTAAGAAT--T---------TTCCTCAGAAA--TAGAA--------CACCA-------------------------------------------------------------------ATATTTAGG--------AGACGTC-AATCAGAA---GAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:02 AM