ID:

dsi_29342

 Coordinate:

2r:5129461-5129641 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.4 -5.4 -5.1

Flybase annnotation

exon [2r_5129240_5129460_+]; CDS [2r_5129240_5129460_+]; CDS [2r_5129642_5129795_+]; exon [2r_5129642_5129795_+]; intron [2r_5129461_5129641_+]

No Repeatable elements found

mature
star
  1. dsi_29342  2r:5129614-5129629 +
  2. node_39799:9033-9048 -
  3. node_60970:24-39 -
  4. node_86489:1604-1619 -

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGCCGAGAAATCCAAAAGGCTGATAAACAAGGAGCGCGTGGAACAAGATGTGAGTACCAAAAAATGGATATACTTAAGTTTCGTACTAGATTTATTGGCACTACGAATTTTTGTTAGATCCCTTCTAAACATTACGTTACAATACACATTTATAGTAAACTTTTCTACTTACAACAGAAGTATCAGATTTCGGATTGTGTAATTTTGTTTGTCTGCTCTAATCCCCCCAGCTCATCAATCTTAAGAAGGTCTTAAAGAGCCAGACTTCGGACAGCGATGA
*************************************************************************************************************************************************************************..(((((((((.(((..((((...))))..))).))))).))))......************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
.......................ATAAACAAGGAGCGCGTGGAACAAGATC...................................................................................................................................................................................................................................... 28 1 1 2.00 2 1 0 1 0 0 0
........................TAAACAAGGAGCGCGTGGAACAAGATC...................................................................................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0
..........................AACAAAGAGCGCGTGGAACAAGATCT..................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
.....................TGATAAACAAGGAGCGCGTGGAACA........................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0
...................GCTGATAAACAAGGAGCGCGTGGAACA........................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................TGATAAACAAGGAGCGCGTGGAACAAGATC...................................................................................................................................................................................................................................... 30 1 1 1.00 1 1 0 0 0 0 0
.............................AAGGAGCGCGTGGAACAAGATCTCAT.................................................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
........AAATCCAAAAGGCTGATAAACAAGG........................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................AAAGAGCCAGACTTCGGACAGCGA... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................AGCCAGACTTCGGACAGC..... 18 0 1 1.00 1 0 0 0 0 0 1
.........................................................................................................................................................................TTACAACAGAAGTATCAGATTTCGGAT..................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................TAAAGAGCCAGACTTCGGACAGCGA... 25 0 1 1.00 1 0 1 0 0 0 0
...........TCCAAAAGGCTGATAAACAAGGAGCGC................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................AAGAAGGTCTTAAAGA...................... 16 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................................................TTCGAATCCCCTCAGCTCATCA........................................... 22 3 2 0.50 1 0 0 0 0 1 0
.................................................................................................................................................................................................GATTGTGTAATTTTG......................................................................... 15 0 2 0.50 1 0 0 0 1 0 0
...........................................................................................................................................................................................................TTTTGTTTGTCTGCTC.............................................................. 16 0 4 0.25 1 0 0 0 1 0 0
...........TCCAAAAGGCTTATAA.............................................................................................................................................................................................................................................................. 16 1 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................................................................ACAGAACTATGAGAATTCGGA...................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0
..........................AACATGGATCGCGTTGAAC............................................................................................................................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTGAAAGAGCCAGA................ 15 1 15 0.07 1 0 0 0 1 0 0

Anti-sense strand reads

TGCGGCTCTTTAGGTTTTCCGACTATTTGTTCCTCGCGCACCTTGTTCTACACTCATGGTTTTTTACCTATATGAATTCAAAGCATGATCTAAATAACCGTGATGCTTAAAAACAATCTAGGGAAGATTTGTAATGCAATGTTATGTGTAAATATCATTTGAAAAGATGAATGTTGTCTTCATAGTCTAAAGCCTAACACATTAAAACAAACAGACGAGATTAGGGGGGTCGAGTAGTTAGAATTCTTCCAGAATTTCTCGGTCTGAAGCCTGTCGCTACT
**************************************************************..(((((((((.(((..((((...))))..))).))))).))))......************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...........................................................................................AAATAACCTTGATGCTT............................................................................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0 0
.........................TTTGTACCTAGCGCAACTTGT........................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................ATAACCTTGATGCTTA............................................................................................................................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0 0
..........................TTGTACCTAGCGCAACTTGT........................................................................................................................................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGCCTAACACAATTAAACGAA...................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0
........................................................................TGAATTGAAAGCAAGAACTAA............................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 1 0 0
......................................................................................................................CAGGGATAATTTGTAATGC................................................................................................................................................ 19 3 9 0.11 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGTCTGGAGTCTGACGCTAC. 20 3 9 0.11 1 0 0 0 0 1 0 0 0
......................................................................................................................TAGGGATAATTAGTAATGC................................................................................................................................................ 19 3 20 0.10 2 1 0 0 0 0 0 0 1
......................................................................................................................CAGGGATGATTAGTAATG................................................................................................................................................. 18 3 20 0.10 2 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGAGTAGTTTGAATT.................................... 16 1 13 0.08 1 0 1 0 0 0 0 0 0
......................................................................................................................CAGGGAAAATTAGTAATGC................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0
...................................................................................................GTGGTTCTTAACAACAATC................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................GAATTGCAAGCATGATCA.............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 09:59 AM