ID:

dsi_29335

 Coordinate:

3r:21771075-21771352 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_21771353_21772075_+]; CDS [3r_21771353_21771471_+]; exon [3r_21770928_21771074_+]; CDS [3r_21770928_21771074_+]; intron [3r_21771075_21771352_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACACTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCAGAATAATGCCAATGGGTTTTATAATAGTTCGCATTATCATCTGTATAAGAAATGATAGCGGAATATTTTTCTTTGGCTCGTATTTTCTTATCAGCAATATTAAGAATACATATTATTATCAGAATATTTGATAATACGGCATAACGTTATCTTTAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAAATAATCTGCAACGAACTTTCACTTTATTAACTGCATAGTTCTAATAATTTATCTTTTTAATTTATAGATCCTGGAATTGGAGACGTCTGCGGCATTCGTCTGGATCATCGAGAGATC
**************************************************(((((.(((...(((.((((.(((....))).))))...((((((...((((((((.....)))..)))))(((((.((((((.....(((..((((..(((((..........)))))))))....((((((((((...))))))))))((......))(((((((((......)))))))))))).....................)))))).)))))..)))))).............)))...))).)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M024
male body		 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................................................................................................................................................................................CCTGGAATTGGAGACGTC.............................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.................................................GGTTAGTACTTAGCA.......................................................................................................................................................................................................................................................................................................................... 15 1 6 2.00 12 12 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GACCCTGGAATTGGCGAC................................. 18 2 5 1.60 8 8 0 0 0 0 0 0 0 0 0 0 0
GACACTCATGTCAGTGCTGT...................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......CATGTCAGTGCTGTATCTTCGC.............................................................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....CTCATGTCAGTGCTGTATCT.................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................CTGGATCATCGAGAGATC 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......CATGTCAGTGCTGTATCTTCGCATT........................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............TGCTGTATCTTCGCATTGTGGGAGTG.................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................GGTTAGTACTTAGCAGCA....................................................................................................................................................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
GACACTCATGTCAGTGCTGTATC................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................CTGTATCTTCGCATTGTGGGA..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................TGGAATTGGAGACGTTTGCGGCATT..................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TTGGAGACGTCTGCGGCA....................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTTAGTACTTAGCAG......................................................................................................................................................................................................................................................................................................................... 15 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATGATTGCGGAAAATTTTGCT.................................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TAGATCCTCGAATTGGTG................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................TTCTTCTTTGGCTCGTA........................................................................................................................................................................................................................................ 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GAATTGGAGACGTCGGCGC......................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AGACCCTGGAATTGGCGAC................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GCTAATACCGCATAACG........................................................................................................................................................................ 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GACGTCTTCGGCGTTCG................... 17 2 13 0.15 2 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................TATCTCTAAATAAATAAGG.................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................ACCCTGGAATTGGCGAC................................. 17 2 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTTAGTACTTAGCAGCG....................................................................................................................................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................GGGCGTGTACTCAGCGGGA...................................................................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................TCTCAGAATCTTTGATAAAA.................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................ATTTGATAACACGGGA............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................................................................................GGATCGTCGAGAGATA 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTAGTACTTATGCGA........................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTATTAGGGATATTAAGAAT............................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTGTGAGTACAGTCACGACATAGAAGCGTAACACCCTCACCTGAGTCGCCCAATCATGAATAGTCTTATTACGGTTACCCAAAATATTATCAAGCGTAATAGTAGACATATTCTTTACTATCGCCTTATAAAAAGAAACCGAGCATAAAAGAATAGTCGTTATAATTCTTATGTATAATAATAGTCTTATAAACTATTATGCCGTATTGCAATAGAAATTTATTTATTTCTATTCGGATTAGTGAAAGGTAATATTAATTTTATTAGACGTTGCTTGAAAGTGAAATAATTGACGTATCAAGATTATTAAATAGAAAAATTAAATATCTAGGACCTTAACCTCTGCAGACGCCGTAAGCAGACCTAGTAGCTCTCTAG
**************************************************(((((.(((...(((.((((.(((....))).))))...((((((...((((((((.....)))..)))))(((((.((((((.....(((..((((..(((((..........)))))))))....((((((((((...))))))))))((......))(((((((((......)))))))))))).....................)))))).)))))..)))))).............)))...))).)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.........................................................................................................................................................................................................................................................................AGACGTTGCTTGAAAGTGAAA............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................TCGCCCAATCATGAATAGTCT........................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................TTGACTCTCGCTTTATAAAAAGA.................................................................................................................................................................................................................................................. 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................ACCTTAACCTCTGCAGAC............................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................TTATCAAGCGTAATAGTAGAC............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AAAAAAAAAATATCTACGACCTT......................................... 23 3 3 0.33 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................GAGTCGTTGCTTGAAAGT................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGAAAATTGAAATATCAAGGAC............................................ 22 3 4 0.25 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TATTAGGGGTTGCTTGAAAGA................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.............TAGGACTTAGAAGCGTAACA......................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0
.................................................................................................................TTTGCTGTCGCCTTATAAATA.................................................................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CAGACCTGGAAGCTCTCT.. 18 2 15 0.07 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................AATTGACGCCTCAAGACTA........................................................................ 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TCTGCAGGCGCCATA...................... 15 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................GGGATTAGTGATAAGTAAT............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21771025-21771402 + dsi_29335 GACACTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCAGAATAATGCC------AATGGGTTTT-----ATAAT-------------AGTTCGCA-TTATCATCTGTATAA-------GAAATGATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATTATTATCAGAATATTTGATAATACGGCATAACGTTATCTTTAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAAATAA----------------------------------------------------------------------------------------T---CTGCAACGAACTTTCACTTTAT-TAAC--------TGCATAGTT--------------------------------------CTAATA------ATTTAT--CTTTTTAATTTATAGATCCTGGAATTGGAGACGTCTGCGGCATTCGTCTGGATCATCGAGAGATC
droSec2 scaffold_13:1086148-1086525 + GACACTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCAGAATAATGCC------TATGGGTTTT-----ATAAT-------------AGTTCGCA-TTATCATCTGTATAA-------GAAATGATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATCATTATCAGAAAATTTGATAACACGGCATAACGTTATCATAAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAAATAA----------------------------------------------------------------------------------------T---CTGCAACGAACTTTCACTTTAT-TAAC--------TGCCTAGTT--------------------------------------CTAATA------ATTTAT--CTTTTTAATTTATAGATCCTGGGATTGGAGACGTCTGTGGCATTCGTCTGGATCATCGAGAGATC
dm3 chr3R:22294676-22295055 + GACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTCCTTATCAGAATAATGCC------TATTCGCATT-----ATAAT-------------AGTTTGCA-TTATCATCTGTATAA-------GAAATAATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATCATTATCAGGAAATTTGATAACACGCCATAACGTTATCTTAAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAATGAA----------------------------------------------------------------------------------------T---CTGCAATGAACTTTCACTTTAT-TAGC--------TGTCTGGTT--------------------------------------CTAAAATTGTAT----AT--CTTTTTAATTCGTAGATCCTGGAATTGGCGACGTCTGCGGTATTCGTCTGGATCATCGAGAGATC
droEre2 scaffold_4820:5750971-5751118 - GACACTCATGTCGGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCCGAATAATGCC------TATAGGTTTT-----AGAAT-------------AGTTTCCG-TTATCATATGTATAC-------AAAATGATAGCGGATTATTT------------------------TTCTATAGATCGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droYak3 3R:24193427-24193790 - GACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTCATTATCAAAACAATACT------TATTGGCTTT-----AGAAT-------------AGTTCTCA-TTATCATCTGTGTAA-------GAAATGACAGCGGAATATTT------------------------T----------------TCTTATCAGT--------------------------CATATTAAGACAGCATATCTATATTAGAAAATTTGATAACAGGGCATAACGTTATCATGAAATAAATACAGATAAGCCTAATCACTTTTTGTGCTAATTAAAAGAA----------------------------------------------------------------------------------------T---CTGTAATGAACTTACACTTTAA-CAAC--------TGCCTAGCT--------------------------------------CTAATCTTTAAT----AA--CTTTCTAATTTGCAGATCCTGGAATTGGCGACGTCTGCGGCATTCGCCTCGATCATCGAGAGATC
droEug1 scf7180000409682:289880-290229 - GACGCTCATGTCAGTGCTGTATCTACGGATTGTGGGCGTGGACTCAGCGGGTTAGTGCTTATCAGAGTTTTACC------TATATGGATC-----ATCAT-------------AGTTTTCAGTTTTCATGAAAAG-A-------ATAATGATAATGAATTAGAA------------------------TTCCTCAAATATCAATTTCTTATCACTGAAAAAAGTATTGATAATGAAATC---------------------------------------------CCATTTTATAATCTTAAAAATAATATTAATAA-TGAAATCACCTTTCATTGTCATTGAGAAAAGTAA------------------------------------------------------------------------------------TCCTATGTTATGAACTGACTGTAT----------------------------------------------------------------AATAATATTT----TG--ATGCTTTAACTACAGATCCTGGAATTGGTGACGTCTGCGGGATTCGCCTTGATCATCGAGAGATC
droBia1 scf7180000302113:2533551-2533827 + GACGCTCATGTCAGTGCTCTATCTACGCATTGTGGGAGTGGACTCAGCTGGTTGGTATACCTTAT-----TGCCTACCTCTATAAGGATT-----ATCA---------------GATTCTTATCCTAATCAAAAAAAATTTTACCGAATAAAGGCATAATAATAAAAAAAAGATTGATATTTTAGCTA------------TATTATGATATTAGC--------------------------TATATTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--------TATACATTT--------------------------------------CTAATAATCTCC----AT--ATCTCCCATCTATAGATCCCGGAATTGGCGACGTCTGCGGCATTCGTCTCGACCATCGAGAGATC
droTak1 scf7180000415712:190955-191335 + GACGCTCATGTCAGTGCTCTATCTACGCATCGTGGGTGTGGACTCAGCTGGTTAGTATTTATTATAGCTAGGCC------TATAGGGATT-----ATCAT-------------TGTTTAC-----TAATCGAAAAAA-------ATAATGATAATGAAATCAGT------------------------TTCTTCAAAACACTTTTTCTTATCTCTGAATAAGGCAGAGATAATAAAATCACATTCTCAAAATCCCAT-----------------------------------------------------------------------TTCATTATCATGCAAAAAAGAAATGATAA---------------------------------------AGAAAAAAAGTTATGATA-ATAAAAAAGCCTTTTATTGATCCT----TTTGAAGTTCCACTTTTTATAAG--------TACATATAT--------------------------------------CTAAATTTAACC----ATCTATTTCCTATCTTTAGATCCTGGAATCGGCGACGTCTGCGGCATTCGTCTCGATCATCGAGAGATC
droEle1 scf7180000491280:323828-324139 + GACGCTCATGTCAGTGCTGTATCTCCGCATTGTTGGTGTGGACTCAGCGGGTGAGTCTTTATCAGGCTTTTGAC------TATGAGCACTTGATTATCATAACAAAAAGAAATGGTTGTCACTCATT-ACAAAAG-A-------GTTACGATAGTGAAT--------------------------------------------------------------------------------------------TTCCAT-----------------------------------------------------------------------TTCATTATCAAGGAAAAATGTGAAGATAACAAAGTTACAT-------CA-------------------------ACATTATTGATAATGCATTAAG--------GAATGCT----TATAA--C-AC-------------------------TT--------------------------------------AACTAATAATAAAT----AT--ATTTCTTGTTTACAGATCCCGGCTTTGGCGACGTCTGCGGCATTCGTCTCGATCATCGCGAGATC
droRho1 scf7180000779718:13712-14090 - AACGCTCATGTCAGTGCTGTACCTTCGCATTGTGGGTGTGGACTCTGCAGGTGAGTCTTTATCAGGGTTATGGC------TTTGAGTACT-----ATTAT-------------AGTTTGTCATTCATACCAAAAGTG-------GGAATGATTATCAAATCATT------------------------TTCT-CAAATCGCTTTTTATTATCACTAA--AAAGTATTGATTGTGTAATC--------------CATA-----------------------------------------------------------------------TTCATTATCAAGAAAATAAGTAATGATAACAAACTACCATATTACATGAAATGTTATGAAATTGTCATGGAAAGAAAGTATTGATA-GGAAATAAG--------GAATCCT----TATGAAAC-ACT----------------------------------------------------------------AATTAATAATTTTT----TG--ATTTCTTAATCACAGATCCTGGCTTTGGAGATGTCTGCGGCATTCGTCTCGATCATCGGGAGATC
droFic1 scf7180000454055:2191822-2192200 + GACGCTCATGTCAGTGCTTTATTTACGCATAGTGGGAGTGGACTCAGCGGGTAAGTGGTTATCAATATGGAGCC------TATTACGATT-----ATCAT-------------AGTTTC------TTATCAAAAT-A-------GTAACGATAATGAAAACAGT------------------------TTCTTGAAATCATAATTTATTATCACTAGAAAAAGTATTGACTATAAAGTC--------------ACCT-----------------------------------------------------------------------TTCATTATCAAGGGCAAAAATAATGATAA---------------------------------------TGAAAATA-------------------GC------------TC----TCTCTAGTTTAATTTTTTCAATGGAATTCGATAAATATAACTAAATTTATCTTTATATAGTTAAATTAATTTGGCTAACTAAAT------ATTAATCTTTTTGTTATCCATAGATCCTGGCATTGGCGACGTCTGCGGAATTCGACTCGATCACCGCGAGATC
droKik1 scf7180000302475:578672-578743 + AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TATTTTCCTTTACAGATCCCGGCATTGGCGATGTCTGCGGCATTCGCCTTGATCATCGCGAAATC
droAna3 scaffold_13340:22359439-22359513 - TAATCTAG-----------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTATTTATTTATAGATCCCGGTATCGGGGATGTCTGCGGCATTCGCCTGGATCATCGCGAGATC
droBip1 scf7180000396721:795477-795543 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTATTCTTTTGTAGATCCCGGTATTGGGGATGTCTGCGGCATTCGGCTGGACCATCGCGAGATC
dp5 2:7849873-7849970 + TCTATTCACTTCACAG----------------------------------------------------------------------------------------------------------------------------------TATGAAAGCATATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATCCATATTCAACAGATCCTGGGTTCGGTGATGTGTGCGGCATACGCCTGGATCACCGGGAGATA
droPer2 scaffold_0:1675161-1675262 + GACGCTCATGTCAGTGCTTTACCTACGCATTGTGGGCGTGGATTCGGCAGGTGAGTCTTTATCTTTTC------------ATTTCAC---------------------------------------------------------TGTATGATAGTGTATTAATA------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATA---------------------------------------------------------T
droWil2 scf2_1100000004902:9934224-9934301 - TAATCTCAATCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCTGTTAACAGATCCCGGCATTGGCGATGTGTGTGGCATAAGACTCGATCATCGCGAGATT
droVir3 scaffold_13047:15323297-15323361 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTAACAGATCCAGGTTTTGGTGAAGTGTGCGGCATAAGGCTGGATCATCGCGAGATC
droMoj3 scaffold_6540:18800936-18801025 + TAATCACATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA------ATTAATCTTAACACATTAAACAGATCCCGGTTTTGGAGAAGTATGCGGCATACGGCTGGATCATCGCGAGATT
droGri2 scaffold_14830:4664709-4664786 - AATAATCGGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTGATTACAGATCCCGGTTTCGGGGAGGTGTGCGGCATTCGGTTGGATCATCGGGAGATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACACTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCAGAATAATGCC------AATGGGTTTT-----ATAAT-------------AGTTCGCA-TTATCATCTGTATAA-------GAAATGATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATTATTATCAGAATATTTGATAATACGGCATAACGTTATCTTTAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAAATAA----------------------------------------------------------------------------------------T---CTGCAACGAACTTTCACTTTAT-TAAC--------TGCATAGTT--------------------------------------CTAATA------ATTTAT--CTTTTTAATTTATAGATCCTGGAATTGGAGACGTCTGCGGCATTCGTCTGGATCATCGAGAGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAATTGGAGACGTC..............................1812.00200200000000000000
GACACTCATGTCAGTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......CATGTCAGTGCTGTATCTTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
....CTCATGTCAGTGCTGTATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATCATCGAGAGATC1811.00100000100000000000
......CATGTCAGTGCTGTATCTTCGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..............TGCTGTATCTTCGCATTGTGGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
GACACTCATGTCAGTGCTGTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
................CTGTATCTTCGCATTGTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGACGTCTGCGGCA.......................1811.00110000000000000000
droSec2
GACACTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCAGAATAATGCC------TATGGGTTTT-----ATAAT-------------AGTTCGCA-TTATCATCTGTATAA-------GAAATGATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATCATTATCAGAAAATTTGATAACACGGCATAACGTTATCATAAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAAATAA----------------------------------------------------------------------------------------T---CTGCAACGAACTTTCACTTTAT-TAAC--------TGCCTAGTT--------------------------------------CTAATA------ATTTAT--CTTTTTAATTTATAGATCCTGGGATTGGAGACGTCTGTGGCATTCGTCTGGATCATCGAGAGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................ATTGTGGGAGTGGACTCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATTGGAGACGTCTGTGGCA.......................2311.0010100
dm3
GACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTCCTTATCAGAATAATGCC------TATTCGCATT-----ATAAT-------------AGTTTGCA-TTATCATCTGTATAA-------GAAATAATAGCGGAATATTT------------------------TTCTTTGGCTCGTATTTTCTTATCAGC--------------------------AATATTAAGAATACATATCATTATCAGGAAATTTGATAACACGCCATAACGTTATCTTAAAATAAATAAAGATAAGCCTAATCACTTTCCATTATAATTAAATGAA----------------------------------------------------------------------------------------T---CTGCAATGAACTTTCACTTTAT-TAGC--------TGTCTGGTT--------------------------------------CTAAAATTGTAT----AT--CTTTTTAATTCGTAGATCCTGGAATTGGCGACGTCTGCGGTATTCGTCTGGATCATCGAGAGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGGATCATCGAGAGATC2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACGTCTGCGGTATTC....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAACACGCCATAACGTTAT......................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CATGTCAGTGCTGTATCTTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTGTATCTTCGCATTGTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGTCTGGATCATCGAGAGATC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTTAT-TAGC--------TGTCTGG.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCATGTCAGTGCTGTATCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGTATCTTCGCATTGTGGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATCTTCGCATTGTGGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATTGTGGGAGTGGACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTCTGGATCATCGAGAG...2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TATTT------------------------TTCTTTGGCTCGTATT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCATTGTGGGAGTGGACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACGTCTGCGGT........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTTCGCATTGTGGGAGTGGACTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTATTCGTCTGGATCATCGAGAGA..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................ATACATATCATTATCAGG.................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGTCTGGATCATCGAGA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................AT-------------AGTTTGCA-TTATCATCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--CTTTTTAATTCGTAGATCCT.............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCCTGGAATTGGCGACG................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTCATGTCAGTGCTGTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACGTCTGCGGTATT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCTTCGCATTGTGGGAGTGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GACGCTCATGTCAGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATAGCGGAATATTT------------------------TTCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAATTGGCGACGTCTGCG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGCGGTATTCGTCTGATC............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCTTCGCATTGTGGGAGTGGACTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTGGATCATCGAGAGATC2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................TATCTTCGCATTGTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCGTCTGGATCATCGAG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GAATACATATCATTATCAGGA................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAATTGGCGACGTCT.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................TCGCATTGTGGGAGTGGACTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCGACGTCTGCGGTATTCGTCTGGA.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTCTGCGGTATTCGTCTGGAT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GTATCTTCGCATTGTGGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGTGCTGTATCTTCGCATTGTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGTATTCGTCTGGATCATCGAGA....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCTTCGCATTGTGGGAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GTATCTTCGCATTGTGGGAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................ATCAGGAAATTTGATAACACGCC................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCTTCGCATTGTGGGAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTATTCGTCTGGATCATCGAGAA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTGTATCTTCGCATTGTGGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACACTCATGTCGGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTACTTATCCGAATAATGCC------TATAGGTTTT-----AGAAT-------------AGTTTCCG-TTATCATATGTATAC-------AAAATGATAGCGGATTATTT------------------------TTCTATAGATCGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................ATTGTGGGAGTGGACTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030001110
......................CTTCGCATTGTGGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..................GTATCTTCGCATTGTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
................CTGTATCTTCGCATTGTGGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...ACTCATGTCGGTGCTGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................CTTCGCATTGTGGGAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....CTCATGTCGGTGCTGTATCTTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
GACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGGAGTGGACTCAGCGGGTTAGTCATTATCAAAACAATACT------TATTGGCTTT-----AGAAT-------------AGTTCTCA-TTATCATCTGTGTAA-------GAAATGACAGCGGAATATTT------------------------T----------------TCTTATCAGT--------------------------CATATTAAGACAGCATATCTATATTAGAAAATTTGATAACAGGGCATAACGTTATCATGAAATAAATACAGATAAGCCTAATCACTTTTTGTGCTAATTAAAAGAA----------------------------------------------------------------------------------------T---CTGTAATGAACTTACACTTTAA-CAAC--------TGCCTAGCT--------------------------------------CTAATCTTTAAT----AA--CTTTCTAATTTGCAGATCCTGGAATTGGCGACGTCTGCGGCATTCGCCTCGATCATCGAGAGATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................ATTGTGGGAGTGGACTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300000030000
...............GCTGTATCTTCGCATTGTGGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACGTCTGCGGC........................1811.00100001000000
............AGTGCTGTATCTTCGCATTGTGGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCTCGATCATCGAG.....1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCTCGATCATCGAGAGAT.2311.00100000100000
..............TGCTGTATCTTCGCATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGACGTCTGCGGCATTCGC..................2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGCGACGTCTGCGGC........................2011.00100000010000
..................................................................................................................................................AATGACAGCGGAATATTT------------------------T----------------TCTTATCAGT--------------------------C............................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAATTGGCGACGTCTGCGGC........................2411.00100100000000
.............GTGCTGTATCTTCGCATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
.............GTGCTGTATCTTCGCATTGTGGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
............AGTGCTGTATCTTCGCATTGTGGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................................................................ACT------TATTGGCTTT-----AGAAT-------------AGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................AATACT------TATTGGCTTT-----AGAAT-------------AGTTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
droEug1
GACGCTCATGTCAGTGCTGTATCTACGGATTGTGGGCGTGGACTCAGCGGGTTAGTGCTTATCAGAGTTTTACC------TATATGGATC-----ATCAT-------------AGTTTTCAGTTTTCATGAAAAG-A-------ATAATGATAATGAATTAGAA------------------------TTCCTCAAATATCAATTTCTTATCACTGAAAAAAGTATTGATAATGAAATC---------------------------------------------CCATTTTATAATCTTAAAAATAATATTAATAA-TGAAATCACCTTTCATTGTCATTGAGAAAAGTAA------------------------------------------------------------------------------------TCCTATGTTATGAACTGACTGTAT----------------------------------------------------------------AATAATATTT----TG--ATGCTTTAACTACAGATCCTGGAATTGGTGACGTCTGCGGGATTCGCCTTGATCATCGAGAGATCSizeHit CountTotal NormTotal
No Reads
droBia1
GACGCTCATGTCAGTGCTCTATCTACGCATTGTGGGAGTGGACTCAGCTGGTTGGTATACCTTAT-----TGCCTACCTCTATAAGGATT-----ATCA---------------GATTCTTATCCTAATCAAAAAAAATTTTACCGAATAAAGGCATAATAATAAAAAAAAGATTGATATTTTAGCTA------------TATTATGATATTAGC--------------------------TATATTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--------TATACATTT--------------------------------------CTAATAATCTCC----AT--ATCTCCCATCTATAGATCCCGGAATTGGCGACGTCTGCGGCATTCGTCTCGACCATCGAGAGATCSizeHit CountTotal NormTotal
No Reads
droTak1
GACGCTCATGTCAGTGCTCTATCTACGCATCGTGGGTGTGGACTCAGCTGGTTAGTATTTATTATAGCTAGGCC------TATAGGGATT-----ATCAT-------------TGTTTAC-----TAATCGAAAAAA-------ATAATGATAATGAAATCAGT------------------------TTCTTCAAAACACTTTTTCTTATCTCTGAATAAGGCAGAGATAATAAAATCACATTCTCAAAATCCCAT-----------------------------------------------------------------------TTCATTATCATGCAAAAAAGAAATGATAA---------------------------------------AGAAAAAAAGTTATGATA-ATAAAAAAGCCTTTTATTGATCCT----TTTGAAGTTCCACTTTTTATAAG--------TACATATAT--------------------------------------CTAAATTTAACC----ATCTATTTCCTATCTTTAGATCCTGGAATCGGCGACGTCTGCGGCATTCGTCTCGATCATCGAGAGATCSizeHit CountTotal NormTotal
No Reads
droEle1
GACGCTCATGTCAGTGCTGTATCTCCGCATTGTTGGTGTGGACTCAGCGGGTGAGTCTTTATCAGGCTTTTGAC------TATGAGCACTTGATTATCATAACAAAAAGAAATGGTTGTCACTCATT-ACAAAAG-A-------GTTACGATAGTGAAT--------------------------------------------------------------------------------------------TTCCAT-----------------------------------------------------------------------TTCATTATCAAGGAAAAATGTGAAGATAACAAAGTTACAT-------CA-------------------------ACATTATTGATAATGCATTAAG--------GAATGCT----TATAA--C-AC-------------------------TT--------------------------------------AACTAATAATAAAT----AT--ATTTCTTGTTTACAGATCCCGGCTTTGGCGACGTCTGCGGCATTCGTCTCGATCATCGCGAGATCSizeHit CountTotal NormTotal
No Reads
droRho1
AACGCTCATGTCAGTGCTGTACCTTCGCATTGTGGGTGTGGACTCTGCAGGTGAGTCTTTATCAGGGTTATGGC------TTTGAGTACT-----ATTAT-------------AGTTTGTCATTCATACCAAAAGTG-------GGAATGATTATCAAATCATT------------------------TTCT-CAAATCGCTTTTTATTATCACTAA--AAAGTATTGATTGTGTAATC--------------CATA-----------------------------------------------------------------------TTCATTATCAAGAAAATAAGTAATGATAACAAACTACCATATTACATGAAATGTTATGAAATTGTCATGGAAAGAAAGTATTGATA-GGAAATAAG--------GAATCCT----TATGAAAC-ACT----------------------------------------------------------------AATTAATAATTTTT----TG--ATTTCTTAATCACAGATCCTGGCTTTGGAGATGTCTGCGGCATTCGTCTCGATCATCGGGAGATCSizeHit CountTotal NormTotal
No Reads
droFic1
GACGCTCATGTCAGTGCTTTATTTACGCATAGTGGGAGTGGACTCAGCGGGTAAGTGGTTATCAATATGGAGCC------TATTACGATT-----ATCAT-------------AGTTTC------TTATCAAAAT-A-------GTAACGATAATGAAAACAGT------------------------TTCTTGAAATCATAATTTATTATCACTAGAAAAAGTATTGACTATAAAGTC--------------ACCT-----------------------------------------------------------------------TTCATTATCAAGGGCAAAAATAATGATAA---------------------------------------TGAAAATA-------------------GC------------TC----TCTCTAGTTTAATTTTTTCAATGGAATTCGATAAATATAACTAAATTTATCTTTATATAGTTAAATTAATTTGGCTAACTAAAT------ATTAATCTTTTTGTTATCCATAGATCCTGGCATTGGCGACGTCTGCGGAATTCGACTCGATCACCGCGAGATCSizeHit CountTotal NormTotal
No Reads
droKik1
AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TATTTTCCTTTACAGATCCCGGCATTGGCGATGTCTGCGGCATTCGCCTTGATCATCGCGAAATCSizeHit CountTotal NormTotal
No Reads
droAna3
TAATCTAG-----------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTATTTATTTATAGATCCCGGTATCGGGGATGTCTGCGGCATTCGCCTGGATCATCGCGAGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGGTATCGGGGATGTCTGC...........................2312.002000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCGGTATCGGGGATGTCTGC...........................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGCGGCATTCGCCTGG..............2111.001100000
droBip1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTATTCTTTTGTAGATCCCGGTATTGGGGATGTCTGCGGCATTCGGCTGGACCATCGCGAGATCSizeHit CountTotal NormTotal
No Reads
dp5
TCTATTCACTTCACAG----------------------------------------------------------------------------------------------------------------------------------TATGAAAGCATATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATCCATATTCAACAGATCCTGGGTTCGGTGATGTGTGCGGCATACGCCTGGATCACCGGGAGATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTCGGTGATGTGTGCGGCATAC....................2616.0060000000060
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGATGTGTGCGGCATACGC..................2412.0020000000200
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGATGTGTGCGGCATACG...................2312.0020000000020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACGCCTGGATCACCGGGA....2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGTTCGGTGATGTGTGC...........................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTCGGTGATGTGTGCGGCATACG...................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCATACGCCTGGATCACCGGG.....2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGATGTGTGCGGCATA.....................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGTTCGGTGATGTGTGCG..........................2211.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGATGTGTGCGGCATAC....................2111.0010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCATACGCCTGGATCACCGGGA....2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACGCCTGGATCACCGG......2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGTGATGTGTGCGGC........................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGGCATACGCCTGGA.............2011.0010100000000
droPer2
GACGCTCATGTCAGTGCTTTACCTACGCATTGTGGGCGTGGATTCGGCAGGTGAGTCTTTATCTTTTC------------ATTTCAC---------------------------------------------------------TGTATGATAGTGTATTAATA------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATA---------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAATCTCAATCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCTGTTAACAGATCCCGGCATTGGCGATGTGTGTGGCATAAGACTCGATCATCGCGAGATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCGATGTGTGTGGCAT......................2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCCGGCATTGGCGATGTGTGTGG.........................2711.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCGGCATTGGCGATGTGTGTGGC........................2711.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCATTGGCGATGTGTGTGGC........................2411.00100100
droVir3
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTAACAGATCCAGGTTTTGGTGAAGTGTGCGGCATAAGGCTGGATCATCGCGAGATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTTTTGGTGAAGTGTGCGGC........................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGATCATCGCGAGA..1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGCTGGATCATCGCGAG...2111.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAGGTTTTGGTGAA.................................1811.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGTGTGCGGCATAAGGCTGGAT............2711.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAGGTTTTGGTGAAGTGTGCGGC........................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGGTGAAGTGTGCGGC........................2111.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TAATCACATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA------ATTAATCTTAACACATTAAACAGATCCCGGTTTTGGAGAAGTATGCGGCATACGGCTGGATCATCGCGAGATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTTTGGAGAAGTATGC...........................1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGCTGGATCATCGCGAGAT.2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGCATACGGCTGGATCATCGCGAG...2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGGTTTTGGAGAAGTATGC...........................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCCCGGTTTTGGAGAAGTATGT...........................2611.001100000
droGri2
AATAATCGGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTGATTACAGATCCCGGTTTCGGGGAGGTGTGCGGCATTCGGTTGGATCATCGGGAGATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTGTGCGGCATTCG...................1911.00110

Generated: 05/19/2015 at 03:25 PM