ID:

dsi_29313

Coordinate:

3r:4620539-4620688 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4620689_4620783_+]; exon [3r_4620689_4620783_+]; intron [3r_4619192_4620688_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTGTGTTTCACTCAATTTGCCGTAGGGCATGAAAGTCAGGAGTTGGCGCCTGATATTGTGGAAACTCATCCAGCGGGAATTTTACAGTAGTTGCGTTTGATTTCCCGAACATCGGGAGAAGATAGTTTCAGAAACTTAGTTCGTTAAAGAGCAACAAATAACTTGAACATAAACCTCAATCACACTGTTTGTCTTGCAGTTTGTGGCTTACTGAACATCGGAGTGGCAGCCATTTTTGGGCCACAATCC ************************************************.........((((......))))((((((.....(((((.((((.(((((.((((((((...))))))))....(((((...)))))..((((......))))..(((.....)))....)))))..))))...)))))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902008 ovaries
..................................................................................................................................................................................................................ACTGAACATCGGAGTG........................	16	0	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................GCTTACTGAACATCGGAG..........................	18	0	1	1.00	1	1	0	0	0	0	0
...........................................................................................................GAACATCGGGAGAAAA...............................................................................................................................	16	1	3	0.33	1	0	0	1	0	0	0
.............................................................................................................ACTTCGGGAGAAGGTA.............................................................................................................................	16	2	20	0.20	4	0	0	4	0	0	0
.........................................................................................................CCGAATATCGGGAGAAGGT..............................................................................................................................	19	2	8	0.13	1	0	0	0	0	1	0
...................................................................................TTCAGGAGCTGCGTTTGATTT..................................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	1
.................................AAATCAGGAGTTGGC..........................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	1	0	0
...........................................TTGGCGCCAGCCATTGTGGA...........................................................................................................................................................................................	20	3	13	0.08	1	0	0	0	1	0	0
......................................................................................................................................................................................ACTCTGTTTGTCTTG.....................................................	15	1	18	0.06	1	0	0	1	0	0	0
........................................................................GGGGGGAATTTTACCGTA................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

AAACACAAAGTGAGTTAAACGGCATCCCGTACTTTCAGTCCTCAACCGCGGACTATAACACCTTTGAGTAGGTCGCCCTTAAAATGTCATCAACGCAAACTAAAGGGCTTGTAGCCCTCTTCTATCAAAGTCTTTGAATCAAGCAATTTCTCGTTGTTTATTGAACTTGTATTTGGAGTTAGTGTGACAAACAGAACGTCAAACACCGAATGACTTGTAGCCTCACCGTCGGTAAAAACCCGGTGTTAGG ************************************************.........((((......))))((((((.....(((((.((((.(((((.((((((((...))))))))....(((((...)))))..((((......))))..(((.....)))....)))))..))))...)))))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	M053 female body	SRR553487 NRT_0-2 hours eggs
....................................................................................................................................................................................AGTGTGACAAACAGCA......................................................	16	1	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................CTTGTATTTGAGGCTAGTGTG................................................................	21	3	3	0.33	1	0	1	0	0	0
..............................................................TTTGAGTAGGTCGCCGTTGAC.......................................................................................................................................................................	21	3	6	0.33	2	0	0	2	0	0
....................................................................................................................................................................................AGTGTGACAAACAGC.......................................................	15	1	8	0.25	2	2	0	0	0	0
.............................................................................................................................................AGCAACTTCTCGTTATTAATT........................................................................................	21	3	4	0.25	1	0	0	0	1	0
..............................................................................................................................................................................................................CGCATGACTTGTAGCCCTA.........................	19	3	5	0.20	1	1	0	0	0	0
.............................................................................................................................................AGCAACTTCTGGTTGTT............................................................................................	17	2	20	0.20	4	0	0	0	0	4
....................................AATCCTCTACCGCGGGCTA...................................................................................................................................................................................................	19	3	6	0.17	1	0	1	0	0	0
..............................TCTTTCAGTCCTCAGCCGG.........................................................................................................................................................................................................	19	3	20	0.10	2	2	0	0	0	0
..............TTAAACGGCCTACCGTACTG........................................................................................................................................................................................................................	20	3	11	0.09	1	0	1	0	0	0
...................................................................................................................................................................................AAGTGTGACAAACAG........................................................	15	1	14	0.07	1	1	0	0	0	0

Generated: 04/24/2015 at 10:02 AM