ID:

dsi_29305

 Coordinate:

2r:15679974-15680184 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.9 -34.7 -34.7

Flybase annnotation

Antisense to intron [2r_15675011_15681860_-]

Repeatable elements

NameClassFamilyStrand
C-richLow_complexityLow_complexity+

Sense Strand Reads

TCCTTGAAAAGGAGTTTTTCGCTTCTTCCTCTCCCCCGCCCGCCCGCTCTCTTTCACTCTCACTCTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTTGTTTCGGTTTGCGTGTGGTGTGTGTGCAATCAAAAACCCGAAAAGAAGTCAAGCATTTTAATTAAAAATCTAAATCACAATTATTTTCTAAACCGCCAGAGACGTGAAAATTGCAATTCGCTCTCTTTCTCGCTCCCTCTCTCTTTGTGGGAAGCTGAAGAAGAAGCAGCAGCAGCGGAGCAGACGCCGCACACCAATACCAACGCATTT
**************************************************........................(((..((((((((.((.(((((.........))))))).)))))).))..)))...(((....((((.(((((((...((((((((.....)))))............................(((((.(((((........)))))))))).....)))....)).))))).))))....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
.............GTTTTTCGCTTCTTCCTCTCCCCCGCC............................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TTTGTGGGAAGCTGAAGAAGAAGCAGC........................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................CTCCCGCTAACTCACGCTC.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................GTGGGAAGCTGAAGAAGAAG............................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TTGTGGGAAGCTGAAGAAGA.............................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................TTTCACTCTCACTCTCTCTCTCCCGC.......................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................CGGTCTGCCTGTGGTGTG............................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................TCAGTGGGAAGCTGAAGA................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
...............................................................................................GTGTTTGGTTCGGTTTGTGTA................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0
............AGGTGTTCGCTTCTTCC.......................................................................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................CTGAAGAATAAGCACCGGC..................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................TCTCTTTCTCGCTCCA......................................................................... 16 1 18 0.06 1 0 1 0 0 0 0 0 0 0
.........................................................TCTTACTCTCTCTCTTCCGG.......................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................TTTTCACTCTCACTCTCTCT................................................................................................................................................................................................................................................. 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGGAACTTTTCCTCAAAAAGCGAAGAAGGAGAGGGGGCGGGCGGGCGAGAGAAAGTGAGAGTGAGAGAGAGAGGGCGATTGAGTGCGAGTATTGACACAAACAAAGCCAAACGCACACCACACACACGTTAGTTTTTGGGCTTTTCTTCAGTTCGTAAAATTAATTTTTAGATTTAGTGTTAATAAAAGATTTGGCGGTCTCTGCACTTTTAACGTTAAGCGAGAGAAAGAGCGAGGGAGAGAGAAACACCCTTCGACTTCTTCTTCGTCGTCGTCGCCTCGTCTGCGGCGTGTGGTTATGGTTGCGTAAA
**************************************************........................(((..((((((((.((.(((((.........))))))).)))))).))..)))...(((....((((.(((((((...((((((((.....)))))............................(((((.(((((........)))))))))).....)))....)).))))).))))....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
................AAAGCGAAGAAGGAGA....................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0
................................................................................GAGTGCGAGTATTGACACAAA.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
AGGAACTTTTCCTCAAAAAGC.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................TTGGCGGTGTCTGCTATTTTA................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0
....................................GCGGGCGGGCGAGGG.................................................................................................................................................................................................................................................................... 15 1 20 0.20 4 4 0 0 0 0 0
...................................GGCGGGCGGGCGAGGG.................................................................................................................................................................................................................................................................... 16 1 11 0.18 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGCTTGTGGTTATGG......... 15 1 12 0.17 2 0 1 0 0 1 0
...............................................................................................................................................................................................................................................................................................GGCTTGTGGTTATGGT........ 16 1 7 0.14 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGAGGTTATGGTTGCGT... 17 1 8 0.13 1 0 0 1 0 0 0
..............................................................................................................................................................................................TTTTGCGGGCTCTGCACCTT..................................................................................................... 20 3 15 0.07 1 0 0 0 1 0 0
..................................TGGCGGGCGGGCGAG...................................................................................................................................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0
..................................................................................................................................................TTCAGTCGGTAAAATTAA................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................TGTGATTATGGTTGTGTAAT 20 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:15679924-15680234 + dsi_29305 TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGGAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTT
droSec2 scaffold_1:12542415-12542724 + TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGT-T-----GTTTCGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CCAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGAAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTT
dm3 chr2R:15029508-15029825 + TCCTTGAAAAGGAGTTTTTCGC-TTCCTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCACTCTCT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTTGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAATCAA---TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGAAGCAGACGCCG--------------CACACCAATACAAAC-G---CATTT
droEre2 scaffold_4845:9229179-9229488 + TCCTTGAAAAGGAGTTTTTCGC-TTCTTCATCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTGTGCGTGTGG-------------TGT---GTG-----TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACGGC--CAGAGACGTG-GA-AATTGCAAT------TC--GCTCTCTT----CC----T------CGC---------C-TTCTCTCT-C--ATTGC-GG-------------G-----------A---------------AA------------------------------CT----G----------AAGA------------AGAAGAGGCAGCG------GAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTT
droYak3 2R:14150542-14150851 - TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GTCCGCTCTCTT--TCACTCTCA----CTGTCTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTGTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCGTTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--ATTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGCAGCAGCG------GAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTT
droEug1 scf7180000409663:280008-280308 - TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TCTCTCCCCCG--CCC--GCCCGCTCTCGTAATCTGTCTCT----CT--CTGTCTCTCTTGCCCACTCACTCTC-TAACTGTGTTT-----GTTTCGGTGTG-------------------------------TG-TGTGC-AACT-----------AAAAAACA-AAAAGAAGTCAAGCTTTTTAATTA-------------------------A-AAATTTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGA--CATAGAGGTG-AA-AATTGCAAT------TT--GCTCTCTT----TC----T------CTC---------T-CGCTCTTT-C----GGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------ATAAGAAGAAGCA------GAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTT
droBia1 scf7180000302292:1313909-1314219 - TCCTTGAAAAGGAGTTTTTCGC-TTCTTTCTC--------TCTCTCCCCCG--CCC--GCCCTCTCTCTC----G--------------------CGCTCACTCACTCGCTCTT-CGACTGTGTTT-----GTTTCAGTGTGCGTGCG----CCTGTGTGTGT---GTGTCCGTGC--TGC-AATC-----------AAAAACCC-AAAAGAAGTCGAGCGTTTTGATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CCAAACCGCC-CAGAGAGGTG-AA-AATTGCAAT------TC--GCCCTCTC------CCGCT------CGC-TCTCTCTCT-----CTCT-C----CGTCGG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGT---AGCA------GAGCAGACGCCG--------------CACACCAACACCAAC-G---CATTT
droTak1 scf7180000415991:543806-544102 + TCCTTGAAAAGGAGTTTTTCGC-TTCTTTCTC--------TCTCTCCCCCG--CCC--GCCCTCTCTCTC--TCGCT--------------GTATCGCTCACTCACTCACTCTT-TAACTGTGTTT-----GTTTCGGTGTGCGTGT------------GTGT---GTGCCCGGGC--TGC-AAAT-----------TAAAACCC-AAAAGAAGTCGAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGAGGTG-AA-AATTGCAAT------TC--GCTCACTC----------T------CGC---------T-----CTCT-C----CGT-TG-------------G-----------A---------------GG------------------------------CT----G----------AAGA------------AGAAGT---AGCA------GAGCAGACGCCG--------------CACACCAATACCAAC-G---TATTT
droEle1 scf7180000491152:93746-94023 + TCCTTGAAAAGGAGTTTTTCGC-CTCTTCCTC--------TCTCTCCCCTG--CCC--GCTCTCTCTCTT--T--------------------------TGCCTACACGCTCTC-TAACTGTGTTT-----GTTTCCGTGTGAGTG--G-------------T---GTGTGCGTGC--TGC-AATT-----------AAAAACACAAA---AAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGC--CAGAGAGGTG-GA-AATTGCAAT------TC--GCTCTCTT----TC----T------CTC---------T----------C----TGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGA---AGCA------AAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTT
droRho1 scf7180000780106:230436-230704 - TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TTTCTCCCTTG--CCC--GCCCTCTCTCTA--TCA--------------------------CTCACTGACTCTC-TAACTGTGTTT-----GTTTCG-TG------------------TGTGT---GTGTGCGTGC--TGC-GATT-----------AAAAACC--AAA--AAGTCTAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACTGC--CAGAGAGGTG-AA-AACTGCAAT------TTTTGTTCTCTC-----------------------------T----------C----TGT-TG-------------A-----------A---------------AG------------------------------TA----G----------AAGA------------AGAAGA---AGCA------AAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTT
droFic1 scf7180000454044:839960-840259 + TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TCTCTCCCCTG--CCC--GCTCT----A----------------------GCTCTCTCTCGTTCACTCACTCTG-TAACTGTGTTT-----GTTTCCGTGCG--TGTGGCCGTATGTGTGTGT---GTTTGCGTGC--TGA-AGTT-----------AAAAACCCCAA---AAGTCAAGCATTTTAATTA-------------------------AAAAATCTAAATC------G----CAATTGTTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGAGTTG-AAGAATTGCAAT------TT--GCTCTCTT----TT----T------CTC---------T-CTCTCTTT-C----TGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGA------AGCA------GAGCAGACGCCG--------------CACACCAATACCAAC-C---CATTT
droKik1 scf7180000302682:828033-828365 + TCCTTGAAAAGGAGTTTTTCGC-TTCCTCCTCTCTCTCGCACTCTCCCC-TCATCCTTGCCCACTCTCTT--GCTCTCTCT----CT--CTGTGGCTCTCGCTCACTCACT------------TTTGTTTCGGTTCG---GACGTG----------------T---GTGTGTGTGG--TGC-AACC-----------AAAAACG-----------CAAGCATTTAAATTA-------------------------A-TTATTTAAATCAGAATTACAATTA---ATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGC--TAGAGAGGTG-A--AATTGCAAT------TCTTGCTCCCTC----TC----T------GTC---------T-CTCGCATTTC--TTTTT-GG-C-CAACGAGGAGG-----------A-------AGCAGC--AGCGGAAC------------------------GA----G----------AAGA------------AGCAGA---AGCG------GAGCAGACGCCG--------------CACACAAACACTAAA-G---CATTT
droAna3 scaffold_13266:11524076-11524364 - TCCTTGAAAAGGAGTTTGCTGC-T-CTCCCGC--------GCTCTCCC--T--GTC--GCCC-CTCTCTC------TCTCT----CT--CTCTCTGTCTTGCCGCCTCGTTCGC---ACGGGTCTG-----GTGTCGGCCTTCCAGCG-------------------------CCT--TGC-GAAT-----------AAA---------------------ATTTAAACA-------------------------A-AAGTTTAATTA------A--------TAATT-T--------------------------------------------------------------------------------------------------------CTAAATCGC--CAGAGAGAAG-G--AATCGC---------------TCAATCTCTCTC----T------CCC--C------C-CTGTCTCT-C--TTGGG-GG---CACGGC-GAAGG----------A---------------GG------------------------------CC----AAAGGAGAATCAAGA------------GGA------AGC--------AGCAGACGCCGCCGCCAC------TCGCACCACTACAGAC-G---CATTT
droBip1 scf7180000396547:944461-944777 + TCCTTGAAAAGGAGTTTGCTGC-TGCTCTCCC--------TTACACTC------CC--ACACTCAGTCGT--CCCCCGTCT----CT--CTTCCTCTCTTGCCGCCTCATTCG----GCCGAGCTG-----GGTCCGGGGTGTTC---------------------AGCAGTGTGT--TGC-AAAT-----------TAA---------------------ATTTAAATA-------------------------A-AAGTTTAATTA------A----TAATTAA-T-T--------------------------------------------------------------------------------------------------------CTAAATCGC--CAGAGAGAAA-GG-AAGTGCATC------CC--ACTCTCTC----TC----T------CTC---------T-CTGACTCG-C--TCAGG-GG-------------G-----------C----------AGG--AGCGGAAG------------------------GAGACCAAAGGAGAATCAAGAGGAAGCAGCAG--------------------ACGCAGACGCCGCCGCCACCGCTGCTTGCACCAACACTAAC-G---CATTT
dp5 3:9863695-9863996 + TCCTTGAAAAGGAGTTTGCTAT-TGCTGTCGG------------------------------------------------------T------------------------G---TTTGTGTGTTT-----GTTTCCGTGCGTGCG----CGCGTGTTTGTGT---GTGTGTGTGC--TGGGAGTT-----------GGAAACC--AAA-GAA---ACGTAATTTAATTA-------------------------A-A-ATTAAAATT------A----AAAAAATTT-T--------------------------------------------------------------------------------------------------------CTTAATTACCGCAGAGAG-TGTAAGAAT--CAAG------TT--TCCCTCTG------CCAAGCAGAGACGCACATCTCTTT-----CTT--------GT-GGGTGGAGAGC-GAGCGA-------GCCAGCA---AGTTATAGAG------------------------------TG----A----------GAGG------GTGAGACGAAGA---GGCC------GAGCAGACGCCGCC-----------ACGCACCAATACCAAC-G---CATTT
droPer2 scaffold_4:5181130-5181429 + TCCTTGAAAAGGAGTTTGCTAT-TGCTGTCGG------------------------------------------------------T------------------------G---TTTGTGTGTTT-----GTTTCCGTGCGTGCG----CGCGTGTTTGTGT---GTGTGTGTGC--TGGGAGTT-----------GGAAACC--AAA-GAA---ACGTAATTTAATTA-------------------------A-A-ATTAAAATT------A------AACATTT-T--------------------------------------------------------------------------------------------------------CTTAATTACCGCAGAGAG-TGTAAGAAT--CAAG------TT--TCCCTCTG------CCAAGCAGAGACGCATTTCTCTTT-----CTT--------GT-GGGTGGAGAGC-GAGCGA-------GCCAGCG---AGTTATAGAG------------------------------TG----A----------GAGG------GTGAGACGAAGA---GGCC------GAGCAGACGCCGCC-----------ACGCACCAATACCAAC-G---CATTT
droWil2 scf2_1100000004515:2544272-2544366 - ----------GAAGTTTTTCGC-AGTTTCTTC--------TCTCCCACTCG--CTC--TCCCT----CTC--TCTCTCTCT----CT--CTCTCTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TCTCTCTC----TC----T------CAC---------C-CTGCCTTT-T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC
droVir3 scaffold_13324:2676900-2677219 + TCCTTGAAAAGGAGTTTAGTTTTT-CGCT--C--------T---------------------------------------------------------CCGTTAATGTGTGTGCGTGTGTGTGTTT-----GTTT-------------------------------GTGTAAGTGCTGTTC-GAGTAAAGTGCTGCCGAAAACT--AAAA-AAATTGA--ATTTAAATTG------CGGCTTCTTTCCTGTTGTAAAGAAACTAACT-------------AATT--TT-TCTGAAGAAACCCTGGAAAG-----AAAC--------------------------------------------GCAGCAAGCA--CTTTTATCGGCGATTAGT-TGTGCT-------------------------------GTCTTT--GCCCGCCG------CCACT------CGA-TTTGAGTGTG-----TGC-GT-------------------GTGCGT-------GC----T---TGCAAC--AGCA----------------------------GG----A----------AAAA------------GGGAGT---AGCT------G-CCAGGCAGCG--------------GACACTAACACCAAC-G---CATTT
droMoj3 scaffold_6496:14124658-14124989 - TCCTTGAAAAGGAGTTTAGTTGTT-CGCT--C--------T-------------------------------------------------------------TCGTTCATGTTTGTGCGTGTGTGT-----GTGTTTGTT----------------------T---GTGTGAGTGCTGTTC-AAGTAAAGTGCTGCCGAA-----------AACTAAATAAATTGAATTAAAATAGCGGCTTCCTTTCTGTCTTCA-CAAAAAAAGTG------A----GAAAGAAAACGCTGAAGAAACC-TGGAAAAGTATAAAAT--------------------------------------------A---CAAACA--GTTTTATCGGCGA----------------------------------------T------TC--GGCCGCCG------CCGCT------CGA-TTTGAGTGTG-----TGT-GTGTTTGT-GT------------GCGTCATTGCCGC----TTGCTGCAGC--AGCAG---A-----------------------AG----G----------AAAA------------GGGAGT---AGCT------G-CCAGGCAGCA--------------GACACCAACACCAAC-G---CATTT
droGri2 scaffold_15112:4799428-4799762 - TCCTTGACAAGGAGTTCGTAGT-TC-GT---------------------------------------------------------------------------AGTGTATGTGCGTGCATGTG--T---------------GTATG----AGTTTGTTTGTGT---GAGTGAGTGC--TGT-CACA-----------AAA-ACACAGAAACAGGAAAAG--TGAAAATTA-------------------------A-C-------------------------------------GAAACTTTAGAGAA-----AAACACCCCTCCTCCCTCCGCCCACCACTCCACACCCGAAGTCAACTTGCAGCAAATAGATATTTACACGCGAATAGATTATAAG-----------------------------------TC--GCCCGCCG------CCGCT------CGC-TTTGAGTGTG-----TG------------T-------------G-----------C----------AGT--AGCAG---AGGAAAAAGGGAGTAGCTGTTAAGCA----G----------CAGC------AGCAGAAGAAAA---GGC--------AGCAGCAGCCG---------------ACAGCAACACCAAACGCGCCGTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGGAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............GTTTTTCGC-TTCTTCCTCTCCC------------CCG--CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGC..........................................................2711.00100000010000000000
...............................................................................................CTCCCGCTAACTCACGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAG.................................................................2011.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGA...................................................................2011.00100000000000010000
....................................................................TT--TCACTCTCA----CT--CTCTCTCTCCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTT----TC----T------CGC---------T-CCA.................................................................................................................................................................................................16180.06100000001000000000
droSec2
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGT-T-----GTTTCGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CCAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGAAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---.............................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------TC--GCTCTCTT----TC----T------CGC---------T-CCC.................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------CACACCAATACCAAC-G---C....1911.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................A-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-....................................................................................................................................................................................................2711.0010010
.......................................................................................................................................CGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
dm3
TCCTTGAAAAGGAGTTTTTCGC-TTCCTCCTCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCACTCTCT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTTGGTTTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAATCAA---TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCGAAGCAGACGCCG--------------CACACCAATACAAAC-G---CATTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--........................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AG....................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................TTA-------------------------A-AAATCTAAATC------A----CAATT.....................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AA....................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------CT----G----------AAGA------------AGAAGC---AGCAGC.......................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGAAGCAGACGCCG--------------.........................2112.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA---TC--GCTCTCTT----TC----T------CGC---------T-CCCTC...............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCG...................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---TC--GCTCTCTT----TC----T------CGC---------T-C...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGAAGCAGACGCCG--------------CA.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GTTTTGGTTTGCGTGTGG-------------TGTG----------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAA---TC--GCTCTCTT----TC----T------C.................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................GTTTGCGTGTGG-------------TGTG----------TGTGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AG...........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---.............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------CACACCAATACAAAC-G---C....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAG.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AACCGC--CAGAGACGTG-AA-AATTG.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACGCCG--------------CACACCAATACA.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AA....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................T--CTCTCTCTCCCGCTAACTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAA..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGC.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................TTT-----GTTTTGGTTTGCGTGTGG-------------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AAAAACCCGAAAAGAAGTCAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAA..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCGAAGCAGACGCCG--------------CA.......................2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGAAGCAGACGCC........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................TTGCGTGTGG-------------TGTG----------TGTGC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................CTCTCTCCCGCTAACTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------AGAAGC---AGCAGCAGCGAAGCAGA............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGAAGCAGACGC.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AA---TC--GCTCTCTT----TC----T------CGC---------T-CC..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CCTCTCCC------------CCG--CCC--GCCCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTG-AA-AATTGCAATCAA---TC--GCTCT......................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGCGTGTGG-------------TGTG----------TGTGC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGC---AGCAGCAGCGAAGCA..............................................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AA---TC--GCTCTCTT----TC----T------CGC---------T-CCCTT...............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GTTTTGGTTTGCGTGTGG-------------TGTG----------TGTGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................C------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGAAGCAGACGCCG--------------CACA.....................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GTTTGCGTGTGG-------------TGTG----------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGC---AGCAGCAGCGAA.................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................TGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AA---TC--GCTCTCTT----TC----T------CGC---------T-CCCTC...............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CCCGAAAAGAAGTCAAGCATTTTAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGTG-AA-AATTGCAATCAA---TC--GC.........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGC..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCA.......................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GC--CAGAGACGTG-AA-AAT...........................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AG....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCGAAGCAGACGCCG--------------C........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GTGTGG-------------TGTG----------TGTGC-AATC-----------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---TC--GCTCTCTT----TC----T------CGC---------T-CCC.................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACCGC--CAGAGACGTG-AA-A.............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT-C--TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------A.....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................ATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAG.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---A............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AG...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC---AGCAGCAGCG...................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAG.................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GTTT-----GTTTTGGTTTGCGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTT----TC----T------CGC---------T-CCC.................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CAAGCATTTTAATTA-------------------------A-AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ACTCTCACTCTCT--CTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------AGAAGC---AGCAGCAGCG...................................................1970.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGGTA.................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA------------AGAAGC---AGCAGCAG.....................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000
droEre2
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCATCTCCC------------CCG--CCC--GCCCGCTCTCTT--TCACTCTCA----CT--CTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTGTGCGTGTGG-------------TGT---GTG-----TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACGGC--CAGAGACGTG-GA-AATTGCAAT------TC--GCTCTCTT----CC----T------CGC---------C-TTCTCTCT-C--ATTGC-GG-------------G-----------A---------------AA------------------------------CT----G----------AAGA------------AGAAGAGGCAGCG------GAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAT------TC--GCTCTCTT----CC----T------CGC---------C-....................................................................................................................................................................................................2211.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAT------TC--GCTCTCTT----CC----T------..................................................................................................................................................................................................................2111.0010000010
droYak3
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTCTCCC------------CCG--CCC--GTCCGCTCTCTT--TCACTCTCA----CTGTCTCTCTCTCCCGCTAACTCACGCTCATAACTGTGTTT-----GTTTCGGTGTGCGTGTGG-------------TGTG----------TGTGC-AATC-----------AAAAACCCGAAAAGAAGTCAAGCGTTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGACGTG-AA-AATTGCAAT------TC--GCTCTCTT----TC----T------CGC---------T-CCCTCTCT-C--ATTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGCAGCAGCG------GAGCAGACGCCG--------------CACACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TC----T------CGC---------T-CCCTCTCT-C--ATTGT-GG-------------G-----------A---------------A......................................................................................................................................2712.00200000000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------AAGA------------AGAAGCAGCAGCG------GAGCAGA............................................2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................CGC--CAGAGACGTG-AA-AATTGC........................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGC................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA------------AGAAGCAGCAGCG------GAGCAGACGC.........................................2711.00100100000000
.....................................................................................................................................TTCGGTGTGCGTGTGG-------------TGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTAAACCGC--CAGAGACGTG-AA-AATTGCA.......................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGCAGCG------GAGCAGACGCC........................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------......................................................................1811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-C--ATTGT-GG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AG....................................................................2411.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCG------GAGCAGACGCCG--------------CACACC...................2711.00100000010000
droEug1
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TCTCTCCCCCG--CCC--GCCCGCTCTCGTAATCTGTCTCT----CT--CTGTCTCTCTTGCCCACTCACTCTC-TAACTGTGTTT-----GTTTCGGTGTG-------------------------------TG-TGTGC-AACT-----------AAAAAACA-AAAAGAAGTCAAGCTTTTTAATTA-------------------------A-AAATTTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGA--CATAGAGGTG-AA-AATTGCAAT------TT--GCTCTCTT----TC----T------CTC---------T-CGCTCTTT-C----GGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------ATAAGAAGAAGCA------GAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTTSizeHit CountTotal NormTotal
No Reads
droBia1
TCCTTGAAAAGGAGTTTTTCGC-TTCTTTCTC--------TCTCTCCCCCG--CCC--GCCCTCTCTCTC----G--------------------CGCTCACTCACTCGCTCTT-CGACTGTGTTT-----GTTTCAGTGTGCGTGCG----CCTGTGTGTGT---GTGTCCGTGC--TGC-AATC-----------AAAAACCC-AAAAGAAGTCGAGCGTTTTGATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CCAAACCGCC-CAGAGAGGTG-AA-AATTGCAAT------TC--GCCCTCTC------CCGCT------CGC-TCTCTCTCT-----CTCT-C----CGTCGG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGT---AGCA------GAGCAGACGCCG--------------CACACCAACACCAAC-G---CATTTSizeHit CountTotal NormTotal
No Reads
droTak1
TCCTTGAAAAGGAGTTTTTCGC-TTCTTTCTC--------TCTCTCCCCCG--CCC--GCCCTCTCTCTC--TCGCT--------------GTATCGCTCACTCACTCACTCTT-TAACTGTGTTT-----GTTTCGGTGTGCGTGT------------GTGT---GTGCCCGGGC--TGC-AAAT-----------TAAAACCC-AAAAGAAGTCGAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGAGGTG-AA-AATTGCAAT------TC--GCTCACTC----------T------CGC---------T-----CTCT-C----CGT-TG-------------G-----------A---------------GG------------------------------CT----G----------AAGA------------AGAAGT---AGCA------GAGCAGACGCCG--------------CACACCAATACCAAC-G---TATTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCCTTGAAAAGGAGTTTTTCGC-CTCTTCCTC--------TCTCTCCCCTG--CCC--GCTCTCTCTCTT--T--------------------------TGCCTACACGCTCTC-TAACTGTGTTT-----GTTTCCGTGTGAGTG--G-------------T---GTGTGCGTGC--TGC-AATT-----------AAAAACACAAA---AAGTCAAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGC--CAGAGAGGTG-GA-AATTGCAAT------TC--GCTCTCTT----TC----T------CTC---------T----------C----TGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGAAGA---AGCA------AAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TTTCTCCCTTG--CCC--GCCCTCTCTCTA--TCA--------------------------CTCACTGACTCTC-TAACTGTGTTT-----GTTTCG-TG------------------TGTGT---GTGTGCGTGC--TGC-GATT-----------AAAAACC--AAA--AAGTCTAGCATTTTAATTA-------------------------A-AAATCTAAATC------A----CAATTATTT-T--------------------------------------------------------------------------------------------------------TTAAACTGC--CAGAGAGGTG-AA-AACTGCAAT------TTTTGTTCTCTC-----------------------------T----------C----TGT-TG-------------A-----------A---------------AG------------------------------TA----G----------AAGA------------AGAAGA---AGCA------AAGCAGACGCCG--------------CACACTAATACCAAC-G---CATTTSizeHit CountTotal NormTotal
No Reads
droFic1
TCCTTGAAAAGGAGTTTTTCGC-TTCTTCCTC--------TCTCTCCCCTG--CCC--GCTCT----A----------------------GCTCTCTCTCGTTCACTCACTCTG-TAACTGTGTTT-----GTTTCCGTGCG--TGTGGCCGTATGTGTGTGT---GTTTGCGTGC--TGA-AGTT-----------AAAAACCCCAA---AAGTCAAGCATTTTAATTA-------------------------AAAAATCTAAATC------G----CAATTGTTT-T--------------------------------------------------------------------------------------------------------CTAAACCGC--CAGAGAGTTG-AAGAATTGCAAT------TT--GCTCTCTT----TT----T------CTC---------T-CTCTCTTT-C----TGT-TG-------------G-----------A---------------AG------------------------------CT----G----------AAGA------------AGA------AGCA------GAGCAGACGCCG--------------CACACCAATACCAAC-C---CATTTSizeHit CountTotal NormTotal
No Reads
droKik1
TCCTTGAAAAGGAGTTTTTCGC-TTCCTCCTCTCTCTCGCACTCTCCCC-TCATCCTTGCCCACTCTCTT--GCTCTCTCT----CT--CTGTGGCTCTCGCTCACTCACT------------TTTGTTTCGGTTCG---GACGTG----------------T---GTGTGTGTGG--TGC-AACC-----------AAAAACG-----------CAAGCATTTAAATTA-------------------------A-TTATTTAAATCAGAATTACAATTA---ATTT-T--------------------------------------------------------------------------------------------------------TTAAACCGC--TAGAGAGGTG-A--AATTGCAAT------TCTTGCTCCCTC----TC----T------GTC---------T-CTCGCATTTC--TTTTT-GG-C-CAACGAGGAGG-----------A-------AGCAGC--AGCGGAAC------------------------GA----G----------AAGA------------AGCAGA---AGCG------GAGCAGACGCCG--------------CACACAAACACTAAA-G---CATTTSizeHit CountTotal NormTotal
No Reads
droAna3
TCCTTGAAAAGGAGTTTGCTGC-T-CTCCCGC--------GCTCTCCC--T--GTC--GCCC-CTCTCTC------TCTCT----CT--CTCTCTGTCTTGCCGCCTCGTTCGC---ACGGGTCTG-----GTGTCGGCCTTCCAGCG-------------------------CCT--TGC-GAAT-----------AAA---------------------ATTTAAACA-------------------------A-AAGTTTAATTA------A--------TAATT-T--------------------------------------------------------------------------------------------------------CTAAATCGC--CAGAGAGAAG-G--AATCGC---------------TCAATCTCTCTC----T------CCC--C------C-CTGTCTCT-C--TTGGG-GG---CACGGC-GAAGG----------A---------------GG------------------------------CC----AAAGGAGAATCAAGA------------GGA------AGC--------AGCAGACGCCGCCGCCAC------TCGCACCACTACAGAC-G---CATTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................TGTCGGCCTTCCAGCG-------------------------CCT--TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GAAGG----------A---------------GG------------------------------CC----AAAGGAGA.........................................................................................1911.001000010
...............................................................................CT----CT--CTCTCTGTCTTGCCGCCTCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCGCCAC------TCGCACC...................1911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------GGA------AGC--------AGCAGACGCC........................................1911.001010000
.........AGGAGTTTGCTGC-T-CTCCCGC--------GCTCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................TCTCTGTCTTGCCGCCTCGTTCGC---ACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAGA------------GGA------AGC--------AGCAGA............................................2111.001100000
droBip1
TCCTTGAAAAGGAGTTTGCTGC-TGCTCTCCC--------TTACACTC------CC--ACACTCAGTCGT--CCCCCGTCT----CT--CTTCCTCTCTTGCCGCCTCATTCG----GCCGAGCTG-----GGTCCGGGGTGTTC---------------------AGCAGTGTGT--TGC-AAAT-----------TAA---------------------ATTTAAATA-------------------------A-AAGTTTAATTA------A----TAATTAA-T-T--------------------------------------------------------------------------------------------------------CTAAATCGC--CAGAGAGAAA-GG-AAGTGCATC------CC--ACTCTCTC----TC----T------CTC---------T-CTGACTCG-C--TCAGG-GG-------------G-----------C----------AGG--AGCGGAAG------------------------GAGACCAAAGGAGAATCAAGAGGAAGCAGCAG--------------------ACGCAGACGCCGCCGCCACCGCTGCTTGCACCAACACTAAC-G---CATTTSizeHit CountTotal NormTotal
No Reads
dp5
TCCTTGAAAAGGAGTTTGCTAT-TGCTGTCGG------------------------------------------------------T------------------------G---TTTGTGTGTTT-----GTTTCCGTGCGTGCG----CGCGTGTTTGTGT---GTGTGTGTGC--TGGGAGTT-----------GGAAACC--AAA-GAA---ACGTAATTTAATTA-------------------------A-A-ATTAAAATT------A----AAAAAATTT-T--------------------------------------------------------------------------------------------------------CTTAATTACCGCAGAGAG-TGTAAGAAT--CAAG------TT--TCCCTCTG------CCAAGCAGAGACGCACATCTCTTT-----CTT--------GT-GGGTGGAGAGC-GAGCGA-------GCCAGCA---AGTTATAGAG------------------------------TG----A----------GAGG------GTGAGACGAAGA---GGCC------GAGCAGACGCCGCC-----------ACGCACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................TTTGTGT---GTGTGTGTGC--TGGGAGTT-----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG------GTGAGACGAAGA---GGC..........................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------GT-GGGTGGAGAGC-GAGCGA-------GCCA.....................................................................................................................................................2511.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGA---GGCC------GAGCAGACGCC........................................2211.0010001000000
..........................................................................................................................................................................................................................GTAATTTAATTA-------------------------A-A-ATTAAAATT------...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCACATCTCTTT-----CTT--------GT-GGGTGGA...........................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--------GT-GGGTGGAGAGC-GAGCGA-------G........................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................GGAAACC--AAA-GAA---ACGTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAT--CAAG------TT--TCCCTCTG------C............................................................................................................................................................................................................................2311.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................TACCGCAGAGAG-TGTAAGA.............................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACGAAGA---GGCC------GAGCAGACGC.........................................2511.0010000000010
...........................................................................................................................................................GTTTGTGT---GTGTGTGTGC--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510001000000
droPer2
TCCTTGAAAAGGAGTTTGCTAT-TGCTGTCGG------------------------------------------------------T------------------------G---TTTGTGTGTTT-----GTTTCCGTGCGTGCG----CGCGTGTTTGTGT---GTGTGTGTGC--TGGGAGTT-----------GGAAACC--AAA-GAA---ACGTAATTTAATTA-------------------------A-A-ATTAAAATT------A------AACATTT-T--------------------------------------------------------------------------------------------------------CTTAATTACCGCAGAGAG-TGTAAGAAT--CAAG------TT--TCCCTCTG------CCAAGCAGAGACGCATTTCTCTTT-----CTT--------GT-GGGTGGAGAGC-GAGCGA-------GCCAGCG---AGTTATAGAG------------------------------TG----A----------GAGG------GTGAGACGAAGA---GGCC------GAGCAGACGCCGCC-----------ACGCACCAATACCAAC-G---CATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CTT--------GT-GGGTGGAGAGC-GAGC..................................................................................................................................................................2111.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCG---AGTTATAGAG------------------------------TG----A----------G.....................................................................................2111.001000001
...........................................................................................................................................................GTTTGTGT---GTGTGTGTGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061000001
droWil2
----------GAAGTTTTTCGC-AGTTTCTTC--------TCTCCCACTCG--CTC--TCCCT----CTC--TCTCTCTCT----CT--CTCTCTCTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TCTCTCTC----TC----T------CAC---------C-CTGCCTTT-T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCCTTGAAAAGGAGTTTAGTTTTT-CGCT--C--------T---------------------------------------------------------CCGTTAATGTGTGTGCGTGTGTGTGTTT-----GTTT-------------------------------GTGTAAGTGCTGTTC-GAGTAAAGTGCTGCCGAAAACT--AAAA-AAATTGA--ATTTAAATTG------CGGCTTCTTTCCTGTTGTAAAGAAACTAACT-------------AATT--TT-TCTGAAGAAACCCTGGAAAG-----AAAC--------------------------------------------GCAGCAAGCA--CTTTTATCGGCGATTAGT-TGTGCT-------------------------------GTCTTT--GCCCGCCG------CCACT------CGA-TTTGAGTGTG-----TGC-GT-------------------GTGCGT-------GC----T---TGCAAC--AGCA----------------------------GG----A----------AAAA------------GGGAGT---AGCT------G-CCAGGCAGCG--------------GACACTAACACCAAC-G---CATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003000000000000000000000000000001000000000200000000000000000000000
...............................................................................................................................................................................................................................TAAATTG------CGGCTTCTTTCCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000003
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000100100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-TTTGAGTGTG-----TGC-GT-------------------GTGC..................................................................................................................................................................2212.002000000000001000000000000000000000100000000000000000000000000000
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000002000000000000000000000000000000000
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000100000100000000000000000000000
........................................................................................................................................................................GTAAGTGCTGTTC-GAGTAAAGTGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................GTGTTT-----GTTT-------------------------------GTGTAAGTGCTGTTC-GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CT-------------------------------GTCTTT--GCCCGCCG------CCACT------..................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................GTAAGTGCTGTTC-GAGTAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG------CCACT------CGA-TTTGAGTGT.....................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................GTGTGTGTTT-----GTTT-------------------------------GTGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................CTAACT-------------AATT--TT-TCTGAAGAA.......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-----TGC-GT-------------------GTGCGT-------GC----T---TGCAAC--.......................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................GTTT-----GTTT-------------------------------GTGTAAGTGCTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................GTGCTGTTC-GAGTAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TGTAAGTGCTGTTC-GAGTAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GTTGTAAAGAAACTAACT-------------A........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................TGTTC-GAGTAAAGTGCTGCCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CCTGGAAAG-----AAAC--------------------------------------------GCAGC..................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGCG--------------GACACTAACA...............1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAAAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................TT-------------------------------GTGTAAGTGCTGTTC-GAGTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------GTGCGT-------GC----T---TGCAAC--AGCA----------------------------GG----A----------......................................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................TG------CGGCTTCTTTCCTGTTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----TGC-GT-------------------GTGCGT-------GC----T---TGCAA..........................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
................TAGTTTTT-CGCT--C--------T---------------------------------------------------------CCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------------------------GG----A----------AAAA------------GGGAGT---AGC..........................................................1911.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................GTGTAAGTGCTGTTC-GAGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG-----TGC-GT-------------------GTGCGT-------GC----T---...............................................................................................................................................1930.331000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................TGTGTGCGTGTGTGTGTTT-----G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................TGTGTTT-----GTTT-------------------------------GTGTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTGTGCGTGTGTGTGTTT-----GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
TCCTTGAAAAGGAGTTTAGTTGTT-CGCT--C--------T-------------------------------------------------------------TCGTTCATGTTTGTGCGTGTGTGT-----GTGTTTGTT----------------------T---GTGTGAGTGCTGTTC-AAGTAAAGTGCTGCCGAA-----------AACTAAATAAATTGAATTAAAATAGCGGCTTCCTTTCTGTCTTCA-CAAAAAAAGTG------A----GAAAGAAAACGCTGAAGAAACC-TGGAAAAGTATAAAAT--------------------------------------------A---CAAACA--GTTTTATCGGCGA----------------------------------------T------TC--GGCCGCCG------CCGCT------CGA-TTTGAGTGTG-----TGT-GTGTTTGT-GT------------GCGTCATTGCCGC----TTGCTGCAGC--AGCAG---A-----------------------AG----G----------AAAA------------GGGAGT---AGCT------G-CCAGGCAGCA--------------GACACCAACACCAAC-G---CATTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................ATAAATTGAATTAAAATAGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...................................................................................................................................................................................................................................................................................................TGAAGAAACC-TGGAAAAGT..........................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---A-----------------------AG----G----------AAAA------------GGGAGT---AG...........................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---A-----------------------AG----G----------AAAA------------GGGAGT---AGCT------G-CCAGGC...........................................2611.001000010
..........................................................................................................................................TT----------------------T---GTGTGAGTGCTGTTC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TTTGAGTGTG-----TGT-GTGTT......................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---A-----------------------AG----G----------AAAA------------GGGAGT---AGC..........................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................ATAAAAT--------------------------------------------A---CAAACA--GTTTTATCGGCGG----------------------------------------......................................................................................................................................................................................................................................................2711.001100000
........................................................................................................................................................................GTGAGTGCTGTTC-AAGTAAAGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC--AGCAG---A-----------------------AG----G----------AAAA------------GGG...................................................................2111.001000001
droGri2
TCCTTGACAAGGAGTTCGTAGT-TC-GT---------------------------------------------------------------------------AGTGTATGTGCGTGCATGTG--T---------------GTATG----AGTTTGTTTGTGT---GAGTGAGTGC--TGT-CACA-----------AAA-ACACAGAAACAGGAAAAG--TGAAAATTA-------------------------A-C-------------------------------------GAAACTTTAGAGAA-----AAACACCCCTCCTCCCTCCGCCCACCACTCCACACCCGAAGTCAACTTGCAGCAAATAGATATTTACACGCGAATAGATTATAAG-----------------------------------TC--GCCCGCCG------CCGCT------CGC-TTTGAGTGTG-----TG------------T-------------G-----------C----------AGT--AGCAG---AGGAAAAAGGGAGTAGCTGTTAAGCA----G----------CAGC------AGCAGAAGAAAA---GGC--------AGCAGCAGCCG---------------ACAGCAACACCAAACGCGCCGTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:29 AM