ID:

dsi_29275

 Coordinate:

x:1951753-1952025 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.8 -56.8 -56.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCTACAGGTAAGCATCGCCCACGCACGGGGTCCACTCCTTTGGGTTTTGGGTCTGAGGGCTAAACTTCCGTTTCAAGCAAATCTCTCGTCCGCATAGCTATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCATGGTTATTTAGACGCTGGTTAGAAGGACATGCCTGCACTGCACTGGGAAAAGCAACTCTGAAAGTTAAGCTTGACTAGTGAACTCGGTATTTTAATAGATGTATTGTTCTAAAGTAAATTAAAGTATTTCACAAAATGTGTTTTAAGTGCATAAAAGACCAACCCGTCCAGTTAACTATGCCTTGTTTG
**************************************************(((.((((.((((((.((.((((.....)))).)).))...))))..(((((((((((....))))..)))...))))..((((...((((((...(((((((.((...((..(((......)))..)).....)).))).))))....))))))...)))))))).)))....((((((...((((((((.....))))..))))..)))))).....((((((((((((((........)))).......))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.........................................................................................TTGGCTCTGAGGGCT............................................................................................................................................................................................................................................................................. 15 1 11 1.09 12 0 0 0 0 0 8 4 0
...............................................................................................................................................................................................................................................................TGACTAGTGAACTCGGTATTTTAATA............................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGACTAGTGAACTCGGTATTTTACTA............................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................ATAAAAGACCAACCCGTCCAG.................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................AAGGTAATGTTCCATGGTTATTTAGA................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0
..TTTCACACAAAAACCATCGAGAG............................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................GTTAAGCTTGACTAGTGAACT......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................ATTCTAGATCCTGTTGCC......................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CTGGACTGGGAAAAGCGACC.................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1
..............................TAGAACGTGTTGCCCTAGAG................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................AGAAGGATATTCCTGGACTG..................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CAAAGTGTGTATTAAGTGGA...................................... 20 3 15 0.07 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................GATGTGTTGTGCTAAAG........................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................AATAGTTGTATTGTTGTATA............................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................CTCCTTTGGGATTCGGG....................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGAAAGTGTGTTTTTGGTAGCTCTCGTAAGATCTAGGACAACGGGATGTCCATTCGTAGCGGGTGCGTGCCCCAGGTGAGGAAACCCAAAACCCAGACTCCCGATTTGAAGGCAAAGTTCGTTTAGAGAGCAGGCGTATCGATATTGATCATTCGTTTAACCGCGGGTTCTTCCATTGCAAGGTACCAATAAATCTGCGACCAATCTTCCTGTACGGACGTGACGTGACCCTTTTCGTTGAGACTTTCAATTCGAACTGATCACTTGAGCCATAAAATTATCTACATAACAAGATTTCATTTAATTTCATAAAGTGTTTTACACAAAATTCACGTATTTTCTGGTTGGGCAGGTCAATTGATACGGAACAAAC
**************************************************(((.((((.((((((.((.((((.....)))).)).))...))))..(((((((((((....))))..)))...))))..((((...((((((...(((((((.((...((..(((......)))..)).....)).))).))))....))))))...)))))))).)))....((((((...((((((((.....))))..))))..)))))).....((((((((((((((........)))).......))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
.......................................................................................................................TGTTTCGAGAGCAGGCCTATC......................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
................................................................................................TCTCTCGATTTGAAGGCA................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0
.............................................................................................................................................................................GATTGCAAGGTCGCAATAAA.................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................AGGAGGCGTATCGAT...................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0
.................................................................................................................................GGAGGCGTATCGATA..................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0 0
.....................................ACAACGGGTTGTCCATG............................................................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AAGAAGATTTTATTTAGTTTCA................................................................ 22 3 10 0.10 1 0 1 0 0 0 0 0
...........................................................................................................................TAGGGATCAGCCGTATCG........................................................................................................................................................................................................................................ 18 3 20 0.10 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TGATTGGGCAGGGGAATTG............. 19 3 15 0.07 1 0 1 0 0 0 0 0
.................................................................CGTACCCGGGGTGAGGAAA................................................................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 1 0
.......................................................................................................................CGTTTGTAGAGCGGGCGTA........................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
..AAAGTTTGTTTTTGGTAC................................................................................................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GGTAAATTGTTGCGGAACA... 19 3 20 0.05 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GGTGAATTGATACGAAA..... 17 2 20 0.05 1 0 0 0 0 1 0 0
......................................................GGTAGCGGATGCGTGC............................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:1951703-1952075 - dsi_29275 TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCTACAGGTAAGC-----ATCGCC-C-ACGC-ACGGG--GTCCAC-TCCTT------------TGGG-----TTT-TGGGTC--------------------------TGA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------CT-------------------GCACTGCACTGGGAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGTGAACTCG-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAAGTATTTCACAAAATG-TGTTTTA-AGTGCATAAAAGACCAACCC--------------GTCCAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTG
droSec2 scaffold_10:1899885-1900269 - dse_756 TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCTACAGGTAAGC-----ATCGTC-C-ACGC-ACGGG--GTCCAC-TCCTT------------TGGG-----TTT-TGGGTC--------------------------TGA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------ATACGTA-------CATGCCTGCACTGCACTGGGAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGTGAACTCG-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAACTATTTCACAAAATG-TGTTTTA-AGTGCATAAAAGACCAACCC--------------GTCCAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTG
dm3 chrX:2114070-2114455 - TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCAACAGGTAAGC-----ATCGTC-C-TCGG-ACGGG--GTCCAC-TCCTG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------AAACTTACGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------ATACGTA-------CATGCATGCACTACACTGGAAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGCAAAATCA-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAAGTATTTCACAAAAAT-TGTTTTAAAGTACATAAGAGACCAACCC--------------GTCTAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTG
droEre2 scaffold_4644:2079115-2079486 - der_336 TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCAACAGGTAAGC-----ATCCTA-A-TCGC-ACGGG--GTTCAA-ACCTT------------TGGG-----TAT-TGGGGC---------------------------GA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAGGCAAATTGGCGCCCAAGAAGGTAAAGTTCCA-TGGTTATTACGACGCTGG----TTAGAAGGACTTGC---------ATACGCA-------C------GAAGTACACTGGGAAAAGCAGCC-GTG--GATGTTAAGCTTGACTAGCGAAG--------------------------------------------------------------------AATG-TCGCA--------ATC-ATTGAAACGCCTATCG-TTCTTGTACTTTAAA----------------------------------------AGCA-CCA----------TACTCAAGTAGTTTAAAGTTCTTCTCAGAAAT-TATTTTA-AAGTCATAAGA-----------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:6214969-6215376 + TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTGGCCCAACAGGTAAGC-----AGCGTC-C-TCT--------------C-TCATT------------GGGGATTAGATT-GGGGAT-------TGCGGATTTGGAATTGGGCATT----------------------TTGCT----------------AAACTTCCGTTTCAAGCTTAAATCTCT--CGTT--------------TG-CATAGCT------ATAACTAGTGCGCAAGTTGGCGCCCAAGAAGGTAACGTTCCT-TGGTTATTAAGACGCTGC--GCTTAGCAGGATAATC---------ATACGTATAACATACGAA-----ACTACACTGGGAAAAGCAAAC-CTA--CAAGTTACGCTTGGCTAGCGAT--------------------------------------------------------------------AAATG-TCAGA--------ATCAATTCAAA----------------------------------------------------CATGCACTTGAAAAGCA-TAA----------TACTTAAGTAGTTTAAAGTTCGTCACACAAAT-GATTGTAAAGTAAA----------------------------GTCTAGATAATTTGG------------------------------------------------------------------------------------------------CCTGGTTTG
droEug1 scf7180000409048:14336-14546 - TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTGGCCCAGCAGGTAAGC-----ATTGTC-T-GGAG-ATGGG--GGTTAC-GTTTT------------GGGA-----ATT-TGGGTT--------------------------AGA----------------------GGGCT----------------GAACTGTTCTTTGAAGT--AAATATTT--CGCC--------------CA-CATAGCA------ATAACGATTAATGAAATTGGCGCCCAAGAAGGTAACTCTATA-TTGTTAATAAAACGTTGG----TTAACAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:2096572-2096970 - TCTTCCACACGAAAACCATCGAGAGCATACTAGATCCTGTTGCCCAGCAGGTAAGC-----ATCCTT-C-GC-A-ATGGG--GTCTAC-GCTT-------------C-G-------------GGC-------TCCACAC------------GG-----------------------AGACT----------------GAACCTTCGTTTCAAGT--GAATCTCT--TGTC--------------CG-CATAGCT------ATAGCTAGTAGGCAAAGTGGCGCCCAGGAAGGTAACGTTTCA-TGGTTATTAGAATG----------------ACAC-CTTGTGAC--------ACAAAATGCAAATG-----TTCACTGAGGAAATATT-----------------------------------------------------------------------GGT--TTAA--------------------------------------------------------TGGTCG-AGAGAT---------------------------------CTCCTAGGAGA--TATCTACGCCT-TAAGT--------CATAGC-AGACCTTGATTTATATGGGCC-------------------TTCAGCTATTCCAAGTGCCA--------------CTTACAGCTTGTGAACTCATACTAGGTATATATATGTT---TCTCCGGTTTTGATGTTGAGACGAAGT---------------------------------TCTT
droTak1 scf7180000415191:200489-200836 - TCTTCCACACAAAAACCATCGAGAGCATTTTAGATCCTGTCGCCCAGCAGGTAAGA-----TATCATTA-CGAA-ATGGG--CTCTAC-GCCTT------------TGGG-----GTT-CGGGAT--------------------------AGA----------------------GGGCT----------------GAACTTTTGTCTCAAGT--AAATCTTT--CGTC--------------CG-CATAGCT------CTAACTAGTAAGCAAATTGGCGCCCAGGAAGGTAATGGTCCA-TGGTTATTAAAACATTAA----TTAAAAGGATAAAT---------ATAC------------------------ACTCTGGAAAAA------------------------------------------------------------------------TACT--TAAA--------------------------------------------------------AAAT------------------------------------------------GGAAA--TATT-----------------------------------TATACAAAT-TATTAAA--------------------------------------------------------ACCTTTTAAAATATAAAAAATACACA-ATATTTCCTCTACAGTTAGAAAGCTAAGATTAAGTTCGA-----------------TGAC---TCCTATTTC
droEle1 scf7180000491001:1669861-1670247 - TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCGTG-T-GACA-ATGGG--GTTTAC-GCTTT------------TGGG-----GTT-GGGGAT--------------------------AGA----------------------GGGCT----------------GAACTTTTGTTTCAAAT--AAATCTTT--TGTC--------------CG-CTTAGCT------ATAACTAGTAGGCAAATTGGCGCCCAAGAAGGTAACTTTCCA-TGGTTTTTA-AACATTGA----TTAAGTGGACATGTTCAAGAAACAAACGCG-------CAGACA-----TATACTGGGAGAAACAGACCCTGTTGATATTAGACAT--TTAATAAGTTTA-------------------------------------------------------------------------------------------------------------AAATTTTGGTATAAAATTCTCAAGATTATCTATTTG---------------ATA-TTT----------TTCTAGTACAAAT-------------T---------TTTA-ATTG---------CCTACCTATATTCTAAA----------TGGAATATGTTT----------------------------------------------------------------------------------------------ACTGCTTT
droRho1 scf7180000779506:188001-188445 - TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCTTG-T-GGAA-ATGGG--GCCTAC-GCTTT------------TGGG-----GTT-TGGGAT--------------------------AGA----------------------GGGCT----------------GAACTATCGTTTCAAGT--AAATTTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAAACGTTGA----TTAAAAGGACATACTTAATAAACATATGTT-------CAAGCA-----TACACTGGGAAAAAAATACCCT------------------------------------------------------TATAATCTTTGTACTTTACGTTTACGGTTAACTTGCAACACTTA-TCAGATTTCTTCAATCAATTCTCA----------------------------------------------------AATACTTATGGGA--CA-CTAAGCTTATCAGT--------CATATA-AGATCATCTTTTAAATAGATCATCAAGAGCA----------------------------A---------------------------------------------------------------------GCTAGAATTTAGTTTGTATAATACAATACAAATTTGAATACAAATTTTTC
droFic1 scf7180000454072:3236642-3236986 - TCTTCCACACGAAAACGATCGAGAGCATCCTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCCCG-T-GC-A-GTGGG--GC-----TCCTTGGTTCC-----TTGGG-----GGT-GGGGAC--------------------------A----------------------------T----------------CCGATTCCGATTCAAGT--AACTCTCTCTCCGC--------------CG-CATAGCTTTACATGTAACCGAGGGGCAAGGTGGCGCCCAAGAAGGTAACGTTCCC-AGATTACTAAGGT-CTGCTTGCCCA--CCGAAATGCTCGAGAAAAATGCGTG-------CCAGCG-----TGCACTGGGGAAAGT---CCCA---TA---------------------------------------------------CGAT---------------------------------CACTGATCAGTG-------ATC-ATCCAATCTTCTATCTGATCG-AGAGTTTAGTA------------------------AACATGCATA-----------------------------------------------------------TGTA-AATGCATACAA----------------------------------TATG--------------------------------------------------------------------------------------------------------C
droKik1 scf7180000302696:689236-689578 - TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTGGCCCAGCAGGTAAGC-----ATACCA-C-ACAC-AAGGG--GTCCAC-GCTTT------------GGGG-----ATGATGGGAC---------------------------GG----------------------GGGTT----------------GAACTTTCGTTTCAAGT--GTATCTCT--CGCC--------------CGAAATAGCT------ATAGCTAGTAAGCAAATTGGCGCCCAAAAAGGTAACGTTCCAATGGTTATTAAAACGTTTC------------------------------------------------------------------------------------------------AAGTTTAAGATTTAAGAAAGATGTATTGCCAGTTTGGTCTTGGTATT--AAATGGATGGTGAATTTGA-GTAA---------------------------------------------------------------------------------------------------------------TTACAAAATGAATTAAAATA----------------------------------------------------------------------------------------------AATCCTGA-ATATAGCTTATTCTGTGTAATA-TCAAGTCTAA------------------------------AATTGTTTC
droAna3 scaffold_12929:2012209-2012420 - TCTTTCACACAAAAACCATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGATCTACATATCC-T-TTGC-AAGGA--TATGACAGTTTT------------TGGG-----GGT-TGGGAT----GTATCCAGAT------------GGA----------------------GGGTT----------------GAACTTTCGTTTCAAGT--TAATTTCT--CCCC--------------CG-ACTAGCT------CTAACTAGTAAGCAAGTTGGCGTCCCGCAAGGTAATATCTTT-TGTTTTCTA-AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396434:8980-9173 - TCTTCCACACAAAAACCATCGAGAGCATATTGGATCCTGTGGCCCAGCAGGTAAGACCCATATATCC-C-TTAT-AA-GT--CTG------TTT------------TGGG-----TTC-GGGGATATATGTATCCAGAT------------AGA----------------------GGGTT----------------GAACTTTCGTTTCAAGT--GAATCTCT--CCTC--------------CG-ACTAGCT------ATAACTAGTAAGCAAGTTGGCGCCCCGAAAGGTAATCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1a:128181-128354 - TCTTCCACACAAAAACTATCGAAAGCATATTAGATCCTGTCGCCCAGCAGGTAAGACATACATATCT-G-GG-AGAA-GG--GTCC------TT------------C--------------AGGC--------------------------TGA----------------------GGTTT----------------GAAATGTAATCTCAAGT--AAATTTC----ACA--------------CA-ATTAGCT------ATAACTATTGGCCAAATTGGCGCCCAAGAAGGTAAAGTTCAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_26:542771-542944 + TCTTCCACACAAAAACTATCGAAAGCATATTAGATCCTGTCGCCCAGCAGGTAAGACATACATATCT-G-GG-AGAA-GG--GTCC------TT------------C--------------AGGC--------------------------TGA----------------------GGTTT----------------GAAATGTAATCTCAAGT--AAATTTC----ACA--------------CA-ATTAGCT------ATAACTATTGGCCAAATTGGCGCCCAAGAAGGTAAAGTTCAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:1279792-1279850 + TTTTTCATACGAAAACAATTGAGAGCATATTAGATCCTGTGGCTCAACAGGTAAGC-----ATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:5615812-5616020 - dvi_9013 TCTTTCACACAAAAACCATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGC-----GTCTGTC----AA-A--TGTACTT-T-------AGTTAG-----TCAA-------------GGT----TTAATTTTAA------------GAAATGCCTAAAATACT-GTAACATCTTCTTTATATACATATATATACGATAA------------------CACTCAAC------TATATATATA-TATAGCT------ATAACAAGCGTGCAAATTGGCGCCCAAGAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:4139476-4139645 - TCTTTCACACAAAAACTATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGC-----GATTGTTAATGAA-A--TG--ATCTAC-GTTA------A-----ATCG-------------GGT----TTATCCAT-------------------------------------------------------------------------AAGG--AAATATTA----CCTAACCTTATAACATTG-CCTAGCT------ATAACAAGCCAGCAAATTGGCGCCTAAAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:1500100-1500302 - TCTTCCATACAAAAACAATCGAAAGCATTTTAGATCCTGTTGCCCAGCAGGTAAGC-----GCTT-----GG-AAAA-TCTACCA-A-------AAAAAGTTGACTTAA-------------GCT----TTA--TATAA------------GAAATACTAAAAGAATTTCAAACATAAATAGTATTTATGTATATATATTT----------------------------------TAATAAACATG-CATAGCT------ATAATAAGTGTGCAAATTGGCGCCCAAAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCTACAGGTAAGC-----ATCGCC-C-ACGC-ACGGG--GTCCAC-TCCTT------------TGGG-----TTT-TGGGTC--------------------------TGA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------CT-------------------GCACTGCACTGGGAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGTGAACTCG-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAAGTATTTCACAAAATG-TGTTTTA-AGTGCATAAAAGACCAACCC--------------GTCCAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAGTGAACTCG-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------....................................................................................................................................................................................................................................2611.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGACCAACCC--------------GTCCAG..................................................................................................................2111.00100000100000000000
..TTTCACACAAAAACCATCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTTGACTAGTGAACT......................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................ATTCTAGATCCTGTTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
droSec2
TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCTACAGGTAAGC-----ATCGTC-C-ACGC-ACGGG--GTCCAC-TCCTT------------TGGG-----TTT-TGGGTC--------------------------TGA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------ATACGTA-------CATGCCTGCACTGCACTGGGAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGTGAACTCG-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAACTATTTCACAAAATG-TGTTTTA-AGTGCATAAAAGACCAACCC--------------GTCCAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.CTTTCACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..................TCGAGAGCATTCTAGATCCTGTTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
dm3
TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCAACAGGTAAGC-----ATCGTC-C-TCGG-ACGGG--GTCCAC-TCCTG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------AAACTTACGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAGACGCTGG----TTAGAAGGACATGC---------ATACGTA-------CATGCATGCACTACACTGGAAAAAGCAACT-CTG--AAAGTTAAGCTTGACTAGCAAAATCA-------------------------------------------------------------------------------------------------------------GTATTTTAATA------------------------GA-------------TGTA-TTG----------TTCTAAAGTAAATTAAAGTATTTCACAAAAAT-TGTTTTAAAGTACATAAGAGACCAACCC--------------GTCTAGTTAACTATG------------------------------------------------------------------------------------------------CCTTGTTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................G------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000003000001000000000000000000000000000000000000000000000000000000001000001000000000000000000101111000000203250112120100
.............................................................................................G------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000002000000100000000000000000000000000001001400000000000
........ACAAAAACCATCGAGAGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAAAACCATCGAGAGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................TG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000020100
....................GAGAGCATTCTAGATCCTGTTGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CACTGGAAAAAGCAACT-CTG--AAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAAAGCAACT-CTG--AA............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGAGCATTCTAGATCCTGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGAGCATTCTAGATCCTGTTGCCCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...TTCACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TATTTAGACGCTGG----TTAGAAGGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TGCACTACACTGGAAAAAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGCT----------------AAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AGACGCTGG----TTAGAAGGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................CAGGTAAGC-----ATCGTC-C-TCGG-ACGGG--GTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TGCACTACACTGGAAAAAGCAACT-CT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCAAGAAGGTAACGTTCCA-TGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATAACTAGTAAGCAAATTGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................TTTCAAGC--AAATCTCT--CGTC--------------CG-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AGAAGGTAACGTTCCA-TGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................CAAATTGGCGCCCAAGAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................T------ATAACTAGTAAGCAAATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TCCA-TGGTTATTTAGACGCTGT----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GCGCCCAAGAAGGTAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------GGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................ATCGAGAGCATTCTAGATCCTGTTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CATCGAGAGCATTCTAGATCCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AACAGGTAAGC-----ATCGTC-C-TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGACTAGCAAAATCA-------------------------------------------------------------------------------------------------------------G......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ACTTACGTTTCAAGC--AAATCTCT--CG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAC-TCCTG------------TGGG-----TTT-TGGGTC--------------------------AGA----------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGCCCAACAGGTAAGC-----ATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................GTAAGC-----ATCGTC-C-TCGG-ACGGA--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAAAACCATCGAGAGCATTCTAGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AAATCTCT--CGTC--------------CG-CATAGCT------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................CGCTGG----TTAGAAGGACATGC---------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..................TCGAGAGCATTCTAGATCCTGTTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TAAGCAAATTGGCGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000
droEre2
TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTTGCCCAACAGGTAAGC-----ATCCTA-A-TCGC-ACGGG--GTTCAA-ACCTT------------TGGG-----TAT-TGGGGC---------------------------GA----------------------GGGCT----------------AAACTTCCGTTTCAAGC--AAATCTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAGGCAAATTGGCGCCCAAGAAGGTAAAGTTCCA-TGGTTATTACGACGCTGG----TTAGAAGGACTTGC---------ATACGCA-------C------GAAGTACACTGGGAAAAGCAGCC-GTG--GATGTTAAGCTTGACTAGCGAAG--------------------------------------------------------------------AATG-TCGCA--------ATC-ATTGAAACGCCTATCG-TTCTTGTACTTTAAA----------------------------------------AGCA-CCA----------TACTCAAGTAGTTTAAAGTTCTTCTCAGAAAT-TATTTTA-AAGTCATAAGA-----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................TT------------TGGG-----TAT-TGGGGC---------------------------GA----------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18112.00129000210
.....CACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............................................................................................TT------------TGGG-----TAT-TGGGGC---------------------------GA----------------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.6033000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGTAGTTTAAAGTTC..............................................................................................................................................................................2020.5011000000
.............................................................................................T------------TGGG-----TAT-TGGGGC---------------------------GA----------------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2044000000
droYak3
TCTTTCACACAAAAACCATCGAGAGCATTCTAGATCCTGTGGCCCAACAGGTAAGC-----AGCGTC-C-TCT--------------C-TCATT------------GGGGATTAGATT-GGGGAT-------TGCGGATTTGGAATTGGGCATT----------------------TTGCT----------------AAACTTCCGTTTCAAGCTTAAATCTCT--CGTT--------------TG-CATAGCT------ATAACTAGTGCGCAAGTTGGCGCCCAAGAAGGTAACGTTCCT-TGGTTATTAAGACGCTGC--GCTTAGCAGGATAATC---------ATACGTATAACATACGAA-----ACTACACTGGGAAAAGCAAAC-CTA--CAAGTTACGCTTGGCTAGCGAT--------------------------------------------------------------------AAATG-TCAGA--------ATCAATTCAAA----------------------------------------------------CATGCACTTGAAAAGCA-TAA----------TACTTAAGTAGTTTAAAGTTCGTCACACAAAT-GATTGTAAAGTAAA----------------------------GTCTAGATAATTTGG------------------------------------------------------------------------------------------------CCTGGTTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......ACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................TATAACATACGAA-----ACTACACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........AAAACCATCGAGAGCATTCTAGATCCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEug1
TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTGGCCCAGCAGGTAAGC-----ATTGTC-T-GGAG-ATGGG--GGTTAC-GTTTT------------GGGA-----ATT-TGGGTT--------------------------AGA----------------------GGGCT----------------GAACTGTTCTTTGAAGT--AAATATTT--CGCC--------------CA-CATAGCA------ATAACGATTAATGAAATTGGCGCCCAAGAAGGTAACTCTATA-TTGTTAATAAAACGTTGG----TTAACAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCTTCCACACGAAAACCATCGAGAGCATACTAGATCCTGTTGCCCAGCAGGTAAGC-----ATCCTT-C-GC-A-ATGGG--GTCTAC-GCTT-------------C-G-------------GGC-------TCCACAC------------GG-----------------------AGACT----------------GAACCTTCGTTTCAAGT--GAATCTCT--TGTC--------------CG-CATAGCT------ATAGCTAGTAGGCAAAGTGGCGCCCAGGAAGGTAACGTTTCA-TGGTTATTAGAATG----------------ACAC-CTTGTGAC--------ACAAAATGCAAATG-----TTCACTGAGGAAATATT-----------------------------------------------------------------------GGT--TTAA--------------------------------------------------------TGGTCG-AGAGAT---------------------------------CTCCTAGGAGA--TATCTACGCCT-TAAGT--------CATAGC-AGACCTTGATTTATATGGGCC-------------------TTCAGCTATTCCAAGTGCCA--------------CTTACAGCTTGTGAACTCATACTAGGTATATATATGTT---TCTCCGGTTTTGATGTTGAGACGAAGT---------------------------------TCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TCTTCCACACAAAAACCATCGAGAGCATTTTAGATCCTGTCGCCCAGCAGGTAAGA-----TATCATTA-CGAA-ATGGG--CTCTAC-GCCTT------------TGGG-----GTT-CGGGAT--------------------------AGA----------------------GGGCT----------------GAACTTTTGTCTCAAGT--AAATCTTT--CGTC--------------CG-CATAGCT------CTAACTAGTAAGCAAATTGGCGCCCAGGAAGGTAATGGTCCA-TGGTTATTAAAACATTAA----TTAAAAGGATAAAT---------ATAC------------------------ACTCTGGAAAAA------------------------------------------------------------------------TACT--TAAA--------------------------------------------------------AAAT------------------------------------------------GGAAA--TATT-----------------------------------TATACAAAT-TATTAAA--------------------------------------------------------ACCTTTTAAAATATAAAAAATACACA-ATATTTCCTCTACAGTTAGAAAGCTAAGATTAAGTTCGA-----------------TGAC---TCCTATTTCSizeHit CountTotal NormTotal
No Reads
droEle1
TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCGTG-T-GACA-ATGGG--GTTTAC-GCTTT------------TGGG-----GTT-GGGGAT--------------------------AGA----------------------GGGCT----------------GAACTTTTGTTTCAAAT--AAATCTTT--TGTC--------------CG-CTTAGCT------ATAACTAGTAGGCAAATTGGCGCCCAAGAAGGTAACTTTCCA-TGGTTTTTA-AACATTGA----TTAAGTGGACATGTTCAAGAAACAAACGCG-------CAGACA-----TATACTGGGAGAAACAGACCCTGTTGATATTAGACAT--TTAATAAGTTTA-------------------------------------------------------------------------------------------------------------AAATTTTGGTATAAAATTCTCAAGATTATCTATTTG---------------ATA-TTT----------TTCTAGTACAAAT-------------T---------TTTA-ATTG---------CCTACCTATATTCTAAA----------TGGAATATGTTT----------------------------------------------------------------------------------------------ACTGCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCTTG-T-GGAA-ATGGG--GCCTAC-GCTTT------------TGGG-----GTT-TGGGAT--------------------------AGA----------------------GGGCT----------------GAACTATCGTTTCAAGT--AAATTTCT--CGTC--------------CG-CATAGCT------ATAACTAGTAAGCAAATTGGCGCCCAAGAAGGTAACGTTCCA-TGGTTATTTAAACGTTGA----TTAAAAGGACATACTTAATAAACATATGTT-------CAAGCA-----TACACTGGGAAAAAAATACCCT------------------------------------------------------TATAATCTTTGTACTTTACGTTTACGGTTAACTTGCAACACTTA-TCAGATTTCTTCAATCAATTCTCA----------------------------------------------------AATACTTATGGGA--CA-CTAAGCTTATCAGT--------CATATA-AGATCATCTTTTAAATAGATCATCAAGAGCA----------------------------A---------------------------------------------------------------------GCTAGAATTTAGTTTGTATAATACAATACAAATTTGAATACAAATTTTTCSizeHit CountTotal NormTotal
No Reads
droFic1
TCTTCCACACGAAAACGATCGAGAGCATCCTAGATCCTGTCGCCCAGCAGGTAAGC-----ATCCCG-T-GC-A-GTGGG--GC-----TCCTTGGTTCC-----TTGGG-----GGT-GGGGAC--------------------------A----------------------------T----------------CCGATTCCGATTCAAGT--AACTCTCTCTCCGC--------------CG-CATAGCTTTACATGTAACCGAGGGGCAAGGTGGCGCCCAAGAAGGTAACGTTCCC-AGATTACTAAGGT-CTGCTTGCCCA--CCGAAATGCTCGAGAAAAATGCGTG-------CCAGCG-----TGCACTGGGGAAAGT---CCCA---TA---------------------------------------------------CGAT---------------------------------CACTGATCAGTG-------ATC-ATCCAATCTTCTATCTGATCG-AGAGTTTAGTA------------------------AACATGCATA-----------------------------------------------------------TGTA-AATGCATACAA----------------------------------TATG--------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
TCTTCCACACAAAAACCATCGAGAGCATATTAGATCCTGTGGCCCAGCAGGTAAGC-----ATACCA-C-ACAC-AAGGG--GTCCAC-GCTTT------------GGGG-----ATGATGGGAC---------------------------GG----------------------GGGTT----------------GAACTTTCGTTTCAAGT--GTATCTCT--CGCC--------------CGAAATAGCT------ATAGCTAGTAAGCAAATTGGCGCCCAAAAAGGTAACGTTCCAATGGTTATTAAAACGTTTC------------------------------------------------------------------------------------------------AAGTTTAAGATTTAAGAAAGATGTATTGCCAGTTTGGTCTTGGTATT--AAATGGATGGTGAATTTGA-GTAA---------------------------------------------------------------------------------------------------------------TTACAAAATGAATTAAAATA----------------------------------------------------------------------------------------------AATCCTGA-ATATAGCTTATTCTGTGTAATA-TCAAGTCTAA------------------------------AATTGTTTCSizeHit CountTotal NormTotal
No Reads
droAna3
TCTTTCACACAAAAACCATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGATCTACATATCC-T-TTGC-AAGGA--TATGACAGTTTT------------TGGG-----GGT-TGGGAT----GTATCCAGAT------------GGA----------------------GGGTT----------------GAACTTTCGTTTCAAGT--TAATTTCT--CCCC--------------CG-ACTAGCT------CTAACTAGTAAGCAAGTTGGCGTCCCGCAAGGTAATATCTTT-TGTTTTCTA-AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................T----GTATCCAGAT------------GGA----------------------GGGTT----------------GAACTTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.................ATCGAGAGCATATTAGATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
TCTTCCACACAAAAACCATCGAGAGCATATTGGATCCTGTGGCCCAGCAGGTAAGACCCATATATCC-C-TTAT-AA-GT--CTG------TTT------------TGGG-----TTC-GGGGATATATGTATCCAGAT------------AGA----------------------GGGTT----------------GAACTTTCGTTTCAAGT--GAATCTCT--CCTC--------------CG-ACTAGCT------ATAACTAGTAAGCAAGTTGGCGCCCCGAAAGGTAATCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCTTCCACACAAAAACTATCGAAAGCATATTAGATCCTGTCGCCCAGCAGGTAAGACATACATATCT-G-GG-AGAA-GG--GTCC------TT------------C--------------AGGC--------------------------TGA----------------------GGTTT----------------GAAATGTAATCTCAAGT--AAATTTC----ACA--------------CA-ATTAGCT------ATAACTATTGGCCAAATTGGCGCCCAAGAAGGTAAAGTTCAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTTCCACACAAAAACTATCGAAAGCATATTAGATCCTGTCGCCCAGCAGGTAAGACATACATATCT-G-GG-AGAA-GG--GTCC------TT------------C--------------AGGC--------------------------TGA----------------------GGTTT----------------GAAATGTAATCTCAAGT--AAATTTC----ACA--------------CA-ATTAGCT------ATAACTATTGGCCAAATTGGCGCCCAAGAAGGTAAAGTTCAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTTCATACGAAAACAATTGAGAGCATATTAGATCCTGTGGCTCAACAGGTAAGC-----ATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................ATATTAGATCCTGTGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............CAATTGAGAGCATATTAGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......ATACGAAAACAATTGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................TATTAGATCCTGTGGCTCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
......................GAGCATATTAGATCCTGTGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
TCTTTCACACAAAAACCATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGC-----GTCTGTC----AA-A--TGTACTT-T-------AGTTAG-----TCAA-------------GGT----TTAATTTTAA------------GAAATGCCTAAAATACT-GTAACATCTTCTTTATATACATATATATACGATAA------------------CACTCAAC------TATATATATA-TATAGCT------ATAACAAGCGTGCAAATTGGCGCCCAAGAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................GCATATTAGATCCTGTTGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.CTTTCACACAAAAACCATCGAGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........AAAACCATCGAGAGCATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
......................GAGCATATTAGATCCTGTTGCCCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
.............AACCATCGAGAGCATATTAGATCCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
TCTTTCACACAAAAACTATCGAGAGCATATTAGATCCTGTTGCCCAGCAGGTAAGC-----GATTGTTAATGAA-A--TG--ATCTAC-GTTA------A-----ATCG-------------GGT----TTATCCAT-------------------------------------------------------------------------AAGG--AAATATTA----CCTAACCTTATAACATTG-CCTAGCT------ATAACAAGCCAGCAAATTGGCGCCTAAAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................TTAGATCCTGTTGCCCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............ACTATCGAGAGCATATTAGATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
TCTTCCATACAAAAACAATCGAAAGCATTTTAGATCCTGTTGCCCAGCAGGTAAGC-----GCTT-----GG-AAAA-TCTACCA-A-------AAAAAGTTGACTTAA-------------GCT----TTA--TATAA------------GAAATACTAAAAGAATTTCAAACATAAATAGTATTTATGTATATATATTT----------------------------------TAATAAACATG-CATAGCT------ATAATAAGTGTGCAAATTGGCGCCCAAAAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................AGATCCTGTTGCCCAGCAGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/18/2015 at 09:46 PM