ID:

dsi_2927

 Coordinate:

3l:16103082-16103181 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16102945_16103081_+]; CDS [3l_16102945_16103081_+]; CDS [3l_16103182_16104147_+]; exon [3l_16103182_16104147_+]; intron [3l_16103082_16103181_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------##################################################
ATGACCTCTTCCTCGGATCGCTGACTGTTCTCGAGCACTTGAACTTTATGGTGAGCTTTGAACTATGCAGATGTGTCTATAGAAAGGGATTAGACGTATCATATCATATATCTGGTGGAATAACATTCATGTTTGTTTGTTCTGTTCCAGGCACATCTCCGCCTGGATCGTCGGGTGTCGAAAGAGGAGCGTCGCCTCAT
**************************************************.....((..((..((((..((((((((((...........))))))))))....))))..)).))((((((((((..((....))..)))..))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M025
embryo
 M053
female body
.................................................GGTGAGCTTTGAACAATGGTGA................................................................................................................................. 22 3 1 254.00 254 130 80 23 14 5 2 0 0 0
.................................................GGTGAGCTTTGAACAATGGTG.................................................................................................................................. 21 3 2 14.00 28 9 14 4 0 1 0 0 0 0
.................................................GGTGAGCTTTGAACAATG..................................................................................................................................... 18 1 1 8.00 8 2 3 0 0 0 3 0 0 0
..................................................GTGAGCTTTGAACAATGGTGA................................................................................................................................. 21 3 2 7.00 14 0 4 1 0 1 0 8 0 0
.................................................GGTGAGCTTTGAACAATGG.................................................................................................................................... 19 2 3 6.67 20 7 7 2 1 0 3 0 0 0
.................................................GGTGAGCTTTGAACAATGGTGAT................................................................................................................................ 23 3 1 6.00 6 2 0 2 0 2 0 0 0 0
.................................................GGTGAGCTTTGAACAAT...................................................................................................................................... 17 1 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................GGTGAGCTTTGAACAATGGT................................................................................................................................... 20 3 8 1.75 14 7 4 1 2 0 0 0 0 0
...................................................TGAGCTTTGAACAATGGTGA................................................................................................................................. 20 3 5 1.60 8 2 1 0 0 0 1 4 0 0
................................................AGGTGAGCTTTGAACAATG..................................................................................................................................... 19 2 3 1.33 4 3 1 0 0 0 0 0 0 0
.................TCGCTGACTGTTCTCGAGCACTTGAACT........................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TGACTGTTCTCGAGCACTTGAACTT.......................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................AGGTGAGCTTTGAACAATGG.................................................................................................................................... 20 3 9 0.67 6 3 3 0 0 0 0 0 0 0
..GACCACTTCCTCTGATC..................................................................................................................................................................................... 17 2 12 0.67 8 8 0 0 0 0 0 0 0 0
.................................................GGTGAGCTTTGAACA........................................................................................................................................ 15 1 6 0.50 3 2 0 0 0 0 1 0 0 0
..................................................GTGAGCTTTGAACAATGGTG.................................................................................................................................. 20 3 5 0.40 2 0 1 0 0 0 1 0 0 0
........................................................................GTGACTATCGAAAGGGATTGG........................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0
..................................................GTGAGCTTTGAACAATGG.................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1
...............................................ATGGTGAACTTTGACCTCT...................................................................................................................................... 19 3 20 0.15 3 0 0 0 3 0 0 0 0 0
.................................................GGTGAGCTTTGAACAGTG..................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0
........................................................................................................CATATCTCTGGTGGA................................................................................. 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................CCGCCTGGATCGTTGTG......................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGTCCGGTGTCGAGAGGG.............. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0
................ATCGCGGACGGTTCT......................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................CGTCCGGTGTCGAGAG................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TACTGGAGAAGGAGCCTAGCGACTGACAAGAGCTCGTGAACTTGAAATACCACTCGAAACTTGATACGTCTACACAGATATCTTTCCCTAATCTGCATAGTATAGTATATAGACCACCTTATTGTAAGTACAAACAAACAAGACAAGGTCCGTGTAGAGGCGGACCTAGCAGCCCACAGCTTTCTCCTCGCAGCGGAGTA
**************************************************.....((..((..((((..((((((((((...........))))))))))....))))..)).))((((((((((..((....))..)))..))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
.................................................CCACTCGAAACTTGTTACCACT................................................................................................................................. 22 3 1 5.00 5 2 2 1 0 0 0 0 0 0 0
..................................................CACTCGAAACTTGTTACCACT................................................................................................................................. 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGAGCTAGCAGCCTACATCTT.................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ACCTAGCAGCCTACATCTTG................. 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................CACTCGAAACTTGTTACCAC.................................................................................................................................. 20 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGGACCTAGCAGCCTG........................ 16 2 20 0.40 8 0 3 0 0 0 0 4 0 1 0
.................................................................................................................................................................GGATCTAGCGGCCCAAAG..................... 18 3 20 0.25 5 0 0 0 0 0 0 0 3 2 0
.....................................................................................................................................................................CTAGCAGCTGACATCTTTCT............... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................GGATCTAGCGGCCCAAAGC.................... 19 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.................................................CCACTCGAAACTTGT........................................................................................................................................ 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CTTAGTGTAGGTACCAACAA............................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................TCAGGCGGATCTAGCAGCC.......................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................CTAGCAGCTCACATCTT.................. 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0
..................................................CACTCGAAACTTGTTACCA................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................CACTCGAAACTTGTT....................................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCCGGCCCTAGCAGCC.......................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................AGCGGCAGACCTCGCAGCCC......................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
TACTGGAGAAGGAAC......................................................................................................................................................................................... 15 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0
....AAAGAAGGAGCCTAGC.................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGGATCTAGCGGCCCAAA...................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 01:54 AM