ID:

dsi_29265

 Coordinate:

2r:5129090-5129239 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.5

Flybase annnotation

CDS [2r_5129240_5129460_+]; exon [2r_5129240_5129460_+]; intron [2r_5123224_5129239_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCATAGGCATCACAACAAACTTGTTGCAATGGCCTTCAGTGCACTCAGGAGCTGGCACTTGAGGCGACACTTTGGCCAACTTCAAAAACTGCTCGTTCTGGGCAATTAGTCAAGAAAAAGTTGACAACAAGCTTTGCAGGCATGCAGGCAACGCTAAGAGGGAGAAAACTCTCTAATTTTCCCTTTAATCCTCCACGCAGACATCATCCACGGAAAGCTGTTCCAGAACACACGCATTTTGGAGGTGGAC
******************************************************************************************(((.((...((((.....(((((.......))))).....)))).)).)))...********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..........................................................................................GCTCGTTCTGGGCAA................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TCATCCACGGAAAGCTGTTCCAGAACA.................... 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................TCCAGAACACACGCATTTTGGAGGTGGA. 28 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................TATGCGGACATCATCCACGGAAAGC................................ 25 3 1 1.00 1 0 0 0 1 0 0
............................................................................................................................CAACAAGCTTTGCAGGCATG.......................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................GCTCGTTCTGGGTAAT................................................................................................................................................ 16 1 12 0.25 3 3 0 0 0 0 0
..........................................................................................GCTCGTTCTGGGTAATTC.............................................................................................................................................. 18 2 10 0.20 2 2 0 0 0 0 0
..........................................................................................GCTCGTTCTGGGCAAATA.............................................................................................................................................. 18 1 6 0.17 1 1 0 0 0 0 0
.....................................................................................AAAGTGCTCGTTCTGGGTA.................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0 0 0
..................................................................................CTAGAAGTGCTCGTTCTGGG.................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0
........................................................................................CTGCTCGTTCTGGGTA.................................................................................................................................................. 16 1 10 0.10 1 1 0 0 0 0 0
..........................................................................................GCTCGTTCTGGGTAATTG.............................................................................................................................................. 18 2 13 0.08 1 1 0 0 0 0 0
...................................................................................................TAGCAACTAGTCAAGAAAAA................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1 0
...................................................................................AAAATGTGCTCGTTCTGGGT................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGTATCCGTAGTGTTGTTTGAACAACGTTACCGGAAGTCACGTGAGTCCTCGACCGTGAACTCCGCTGTGAAACCGGTTGAAGTTTTTGACGAGCAAGACCCGTTAATCAGTTCTTTTTCAACTGTTGTTCGAAACGTCCGTACGTCCGTTGCGATTCTCCCTCTTTTGAGAGATTAAAAGGGAAATTAGGAGGTGCGTCTGTAGTAGGTGCCTTTCGACAAGGTCTTGTGTGCGTAAAACCTCCACCTG
**********************************************************************************************************(((.((...((((.....(((((.......))))).....)))).)).)))...****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
............................................................................GTTGAAGTTTCTGATGAGCAC......................................................................................................................................................... 21 3 3 0.33 1 1 0 0
...............................................................................................................................................................................................AGGAGCGTATGTAGTAGGCGC...................................... 21 3 3 0.33 1 1 0 0
....................................................................................................................................................................................GGGCAATTAGAAGGCGCGT................................................... 19 3 11 0.09 1 1 0 0
..................................................................................TTTTTTGACGAGAAAGAC...................................................................................................................................................... 18 2 15 0.07 1 0 1 0
......................................................................................................................................................................TTGTGAGATTAAAAGAG................................................................... 17 2 20 0.05 1 0 0 1
......................................................................................................................................................................................GCAATTAGAAGGCGCGTC.................................................. 18 3 20 0.05 1 1 0 0

Generated: 04/23/2015 at 09:53 AM