ID:

dsi_29263

 Coordinate:

3r:20654212-20654361 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.2 -30.1 -30.0

Flybase annnotation

exon [3r_20654362_20654434_-]; five_prime_UTR [3r_20654362_20654434_-]; intron [3r_20653296_20654361_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGATTGCAGTCGATCTATCAGTACGCTCCGTTTACCAATTAAGGAAAAAGGTTTGCTACCGCTGTGTGTGTTTTTCCCCGAATCTAGGGATCCAACCCGCCAGTTTTGACCAACCCCCAATAGTGCTATAAAAACATAGTTCAGATGGGGCTAACATCTAGTATTCAGACTTTTCTGGTGTTGGAAAGAGCGACTAAGAGTGAAATTGGCTTATAAGAAAGTGCATTGAAAATTGTTCAAAAATCAATAC
*****************************************************************(((.(((..((((........))))...))).)))..(((((..((((((((((.....(((((......))))).....)))))(((.....)))...(((((....))))).)))))..))))).....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................................................................................GAAAGAGCGACTAAGAGTGAAATTGGC........................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.....GCAGTCGATCTATCAGTACG................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...TTGCAGTCGATCTATCAGTA................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................GTGTGTTTTTCCCCGA......................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................TTTGCTACCGCTGTGTGTGT................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................GTGTTGGAAAGAGCGACTAAGAGT................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................GGTGTTGGAAAGAGCGACTA...................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTCTGGTCTTCGAAAGAG............................................................ 19 2 4 0.75 3 2 0 0 0 0 0 1 0
.....GTAATCGATCTATCAGTA................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TGAAAATTGTTCAAAA........ 16 0 4 0.25 1 0 0 0 0 0 0 0 1
...............................................................................................................AACCCCCACTAGTGCTCT......................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0
.....GCAGTCGATCTATTAGCA................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCTAACGTCAGCTAGATAGTCATGCGAGGCAAATGGTTAATTCCTTTTTCCAAACGATGGCGACACACACAAAAAGGGGCTTAGATCCCTAGGTTGGGCGGTCAAAACTGGTTGGGGGTTATCACGATATTTTTGTATCAAGTCTACCCCGATTGTAGATCATAAGTCTGAAAAGACCACAACCTTTCTCGCTGATTCTCACTTTAACCGAATATTCTTTCACGTAACTTTTAACAAGTTTTTAGTTATG
******************************************************(((.(((..((((........))))...))).)))..(((((..((((((((((.....(((((......))))).....)))))(((.....)))...(((((....))))).)))))..))))).....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
........................................................................................................................................................................TGAAAAGTGCACATCCTTTCTCG........................................................... 23 3 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................................ACCGAATAGTCTATCACGTAAAT..................... 23 3 2 0.50 1 0 1 0 0 0 0
..........................AGGGATATGGTTAATTCC.............................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0
.....................................................ACGATAGCGACACACA..................................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0
...................................................AAACCATGGCGACAC........................................................................................................................................................................................ 15 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................CCTAGGTTGTTCGGTCA.................................................................................................................................................. 17 2 8 0.13 1 1 0 0 0 0 0
.............AGATAATCATGCGAAGC............................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 1 0
....................CAGGCGACGCAGATGGTTA................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0
....ACGTCAGCTCGATAG....................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0
...................................................AAACCATGGCGACACTC...................................................................................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0
..........................................................................................................................................................ATAGATCATAAGTCT................................................................................. 15 1 13 0.08 1 0 0 1 0 0 0
....................................TTAATACCTTTTTCCAAG.................................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 1
..................................................CAAACCATGGCGACCC........................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................ATATTGTTGTATCAA............................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20654162-20654411 - dsi_29263 GGA---TTGCAGTCGA-----------------TCTATCAGT-----------ACGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTACCGCTGTG-TGTGTTT--------------------------------------TTCCC-----CGAATCTAGGGATCCAACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATAGTT--CAGATGGG-GCTAACATCTAGTATTCAGACTTTTCTGGTGTTG---GAAAGAGCGACT-------------------------------AAGAG-TGAAATTGGCTTATAA-----G----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAATAC
droSec2 scaffold_33:398173-398440 - GGA---TTGCAGTCGA-----------------TCTATCAGT-----------ACGCTCCGT----TTACAAATTAAGGAAAAAGGTTTGCTACCGCTGTG-TGTGTTTTCGCA-------------------------GTGGGCCATTCCC-----CGAATCTAGGGATCCAACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATGGTT--CAGATGGG-ACTGACATCTAGTATTCAGACTTTTCTGGTGTTG---CAAAGAGCGACT-------------------------------AAGAG-TGAAATTAGCTTATAAGCAAAG----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAATAC
dm3 chr3R:21139265-21139532 - GGA---TTGCAGTCGA-----------------TCTATCAGT-----------GCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCCACCGCTGTA-TGTGTTTTCGCA-------------------------TTGGGCCATTCAC-----CGAATCTAGGGATCCGACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATAGTT--CAGATGGG-ACTAACATCTAGTATTCAAACTTTTCTTGTGGTG---GAAAGAGCGACT-------------------------------AAGAG-TGAAATTAGCTTATAAGCTAAG----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAAAAC
droEre2 scaffold_4820:6904460-6904690 + GGA---TTGCAGTCGA-----------------TCTATCAGC-----------CCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTACCAATGTG-TGTGTTTTCGCA--------------------------------------------GAATTGGGGGTTCCAAA----------------------G--------------------------------------------------------------------GACAAAGTGCTATAAAAACATGGCT--CGGATGGG-ACTGACATCTAGTATTCAGACTGTTATTGTGGTG---GACTGAGCGACT-------------------------------AAGAG-TGAAATTGA----AAAACAAAG----------------------AAAG-----TGCATGGAAAATTC----------------------TT--AAAA------AAACAAAAC
droYak3 3R:25349206-25349456 + GGA---TTGCAGTCGA-----------------TCTATTAGC-----------CCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTGCCA---------------------------------------------------TTCCC-----AGAACGGGGGTATCCAATCTGCCAGTTTTGACCAACAA---CTA----------------------------------------------------------TCGG--GAACAAAGTGCTATAAAAACATGGAT--GCGATGGG-GTTAACTTCTAGTATTCAAACTGTTATTGTGGTG---GATTGAGCGATT-------------------------------GGAAG-TGAAATTAGTTTATAAGCAAAG----------------------AAAG-----TGCATGGAAAATTG----------------------TT--GAAA------ATCCAAAAC
droEug1 scf7180000409692:237903-238205 + GGA---CTGCAGTCGACCGA-------------TCCATCAGC-ACG-ATTC--CCGCTCCGT----TTACCTATTAAGGAA-AAGGTTTGCTACCGTTGAT-TGTGTTTTCCCA-------------------------GTGACACAT----ATTCCC----CGAGGGATCCAATCTCTCAGTTTAGACCAACAG---CTA----------------------------------------------------------TCGG---CTCATATTGCTATAAATATGTAGCT--CAGATTGG-TCTAAAATCTAGTATACCAACTGTTATTATAGTG---GAAAGGGTGAAT-------------------------------CTAAG-TGGAATTAGTTAATGAAACA--------------------------AGTTTGGTGAATAGAA-GTTATTGAAAGTGAAGTTATTTGTTCCT--TAAA------AACCAATA-
droBia1 scf7180000302136:1959077-1959340 - GGG---CTGCAGTCGA-----------------TCTATCAGA-----------ACGCTC-GT----TTACCTATTAAGGAAGAAGGTTGGCTACCGATCTG-TT--CTT----------------------------------------TCC-----CGATTCCACGAATCCAATCTCCCAGTTTTGACCATCAAAAG-------------------------------------------------------------T-------GAAGAGCGCTATAAAACCATAGCT--CAGATTGG-GCCAACCTCTAGTTTACCAACTAGTATCATAGTG---AAAAGGTCGTTT-------------------------------TATAG-TGAAATTCGTC---GCACCT--------------------------ATATTAGTGAATAAAT-CATATTTTAAGTGACGTT----------TTCGTA------TCCTAAAGC
droTak1 scf7180000413457:74203-74491 + GGA---CTGCAGTCGA-----------------TCTATCAGA-----------ACGCTCCGT----TTACCTATTAAGGAAAAAGGTTTGCTACCGCTGTG-TA--CTTTCCCA-------------------------GTGACACATTCCC-----TGGTTCGAGGGATTCAATCTCTTAGATTTGATTATCAGAAA-------------------------------------------------------------TG-------AAAATTTCTATAAAAACGTAGCT--CAAATTGG-CCTAAAATCTAGTATAACAACATATATTGTGGTG---GAAAGAACGCAT-------------------------------TATAT-TTGAAATAGTTTAAAAACCA--------------------------AGTATAGTGAATAGAA-ATTATTAAAAGTGAAGTT----------TTCGCAGCCCTCAGTCAATAT
droEle1 scf7180000491212:505779-506054 - GGA---CTGCAGCCGATCTA-------------TCTATCAGC-ACG-AATCCAGCGCTTCGA----TTACCAATTTAGGAAAAAGGTTTGCTACCGATGTG-TA--TTTTCCCAA----GATTGGTGACACATACACAT-------------AGTCCCGATTCGAGGCAACCAATCTCCCAGTT-CGACCCAC----------------------------------------------------------------------------AGAGTGCTATAAAAATGTATCT--GAGATTGGAAGTAACAGCTAGTATAACAAATAACATTAAGGTGT--TAAGGGGCAGTT-------------------------------CAAAA-TAAAA------------CTT--------------------------AGTTTAGTGAAAAACA-GATACCCAAAGAGAAGTT------------------------------T
droRho1 scf7180000779365:104476-104731 + GGC---CTGCAGTCCA-----------------TCTATCAGC-ACG-AATC--CCGCTCCGA----TTACCAATTAAGGAAAAAGGTTTGCTACCGATGTG-TA--TTTTCCCAA----GATTGGCAACAC---------------------AGTCCCGATTCGAGGGAACCAATCTC-------TGACCAAC----------------------------------------------------------------------------AGAGTGCTATAAAAACGTAGCT--CGGATTGG-AGAAAC-TCTAGTATACAAAATAAAATTGTGGTG---AAAAGGGCAAAT-------------------------------TAAAG-TGAAATTCATTGACAAACTG--------------------------AGTTCAATGAGAAAGA-GTTC----------------------T---C-----------T---CAC
droFic1 scf7180000454055:1056116-1056365 - GTG---TTGCAGTCGA-----------------TCTATCAGC-GCG-ATTC--CCGCTCCGT----TTGCCAATTAAGGTAAAAGGTTTGCTGG----------------------------------------------TGACACATTTCC-----CGATTCTTCGGAACCAATCTCATGG-TTTGACCATCAG---CTA----------------------------------------------------------TCAGATGGACTGAGTGCTATAAAAACGGTGTT--AGAATCGG-AGCAAGATCTAGTATATCAACTAGTATTGTGGTATTGCAAACGTGAAAT-------------------------------TAAAG-TGAAAACAT-TTAGTGGCTA---------------------------------------------------------AGTT----------CGCGAG------TCCCAATAA
droKik1 scf7180000302355:1378071-1378290 + GAA---CTGCAGTCAC-----------------CC--ACGGA-----------GCGCTCCACTAGCTTACCAATTAAGGAGAAAGGTTTGTCACCATT----------------------------------------------------------------TCGGGGAACCAATCTCTTCGTTTTGACCAACCAAGT-------------------------------------------------------------TC-------GGAACTGATATAAAAACCCATTT--TCCATCAT-CGGAACTTTTAGTAATTAAATAATTGTGGCGGTG---AA-GGAGCT----------------------------------GTGAA-TTAAATTAT----CA---------------------------------------------AA-ATTATT-AGTGTGAAGTT----------CTTGTA------------TCC
droAna3 scaffold_13340:1339061-1339311 - GGACCACTGCAGTCGA-----------------TCCATCAGCC-GGATA----CCGCTCCAC-----TTCCAATTAAGGAAAAAGGTTCGACAAGGGTTCGGTGAATCACC-----------------------------------------------ACATCGGGATATCTT-GGTAGC--------------G---CCA---------T----------------------------------------------------------GGATCACTATAAAAGG-CGGTA-GCAAATGGC-AGTTAACTTTATTATTGACTCTAAT-TTTTGGTA---GGA------A--TCATTCGGGTCCTTA-----CTCACAATTTA-----------------------------------TAGGAAAACAAGGAAAAAG-----TGTTTTGATTATTA-----------------GGT--TT--CTTA------AATCAA---
droBip1 scf7180000396712:486038-486291 + GGACCACTGCAGTCGA-----------------TCCATCAGCC-GGATA----CCGCTCCAC-----TTCCAATTAAGGAAAAAGGTTGGCCAAGGGTTCGGTG------------------------------------------AATCAC-----CAAATCGGGGTATCTTAGGTAGC--------------G---CCA---------T----------------------------------------------------------GGGTCATTATAAAAG--GCGCTAACAAATGAC-AGTTAATTTTAGTAATGACACTACT-TTGTGATG---TACATATAAA--TCGTTCGAGTCCTTAACGTCCTTGC------------------------------------------------ACAAATAAAAGG-----TGTGGTGAAATTTT----------------ATAT--TT--TAAA------AATGAAAGA
dp5 2:20529711-20529789 + GGA---CTGCAGTCAATCGAGAGCTGCT--CGAATTATCAGGCACG-TAGC--TCCCTCCAT----TCACCAATAAAGGAAAAAGGTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:3283826-3284142 + GGA---CTGCAGTCAATCGAGAGCTGCT--CGAATTATCAGGCACG-TAGC--TCCCTCCAT----TCACCAATTAAGGAAAAAGGTTTGCA-CGTCCAAA-AATCTCTTCGTAGCTGG--------------------GTGACACATTCGC-----GATTTCCACGGAA----------------------AGT---TCTTTAGTGCCTTATACGGTCAATACTGTGTGGAGTGTGCTGTTTGCTGGCAGTCCAGGTGTG-------AAAA----TATATAAATAAGGCT------------------------------------------------------ACGAAT-------------------------------AAGACCCAAAATTTAGTCATAGGCCAAGGTTTTGGAGTGAAGAT-AATACATAGTTCTGTGCGTTA-----TT--------ATATTTAATTATCCTT---ATA------AAAGGATAA
droWil2 scf2_1100000004943:13481414-13481442 + -------------------------------------------------------------T----TGGCCAATTAAGGAAAAAGGTTTGCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:2260498-2260568 + GAA---CTGCACTCGATTGTG-----TTAGCAATTTATCACTC--G-AG----TCTCTCATT----TTGTCAATTAAGGAAAGAGGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:22647883-22647958 - GAA---CTGCATTCGATTGTG-----TGAACAATTCATCAT-----------------TCG-----CCGTTAATTAAGGAAAAAGGTTTGTTGTG-------CCTATCTCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:9111642-9111712 + GAA---CTGCATTCGATCGTG-----CTAACAATTTATCCATCGA---G----CCTCTCATT----TTGTCAATTAAGGAAAAAGGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGA---TTGCAGTCGA-----------------TCTATCAGT-----------ACGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTACCGCTGTG-TGTGTTT--------------------------------------TTCCC-----CGAATCTAGGGATCCAACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATAGTT--CAGATGGG-GCTAACATCTAGTATTCAGACTTTTCTGGTGTTG---GAAAGAGCGACT-------------------------------AAGAG-TGAAATTGGCTTATAA-----G----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAATACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGCGACT-------------------------------AAGAG-TGAAATTGGC......................................................................................................2711.00100010000000000000
........GCAGTCGA-----------------TCTATCAGT-----------ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
......TTGCAGTCGA-----------------TCTATCAGT-----------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
....................................................................................................G-TGTGTTT--------------------------------------TTCCC-----CGA....................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
......................................................................................TTTGCTACCGCTGTG-TGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................GTGTTG---GAAAGAGCGACT-------------------------------AAGAG-T...............................................................................................................2411.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................GGTGTTG---GAAAGAGCGACT-------------------------------A.....................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATTG----------------------TT--CAAA------A........1640.25100000010000000000
droSec2
GGA---TTGCAGTCGA-----------------TCTATCAGT-----------ACGCTCCGT----TTACAAATTAAGGAAAAAGGTTTGCTACCGCTGTG-TGTGTTTTCGCA-------------------------GTGGGCCATTCCC-----CGAATCTAGGGATCCAACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATGGTT--CAGATGGG-ACTGACATCTAGTATTCAGACTTTTCTGGTGTTG---CAAAGAGCGACT-------------------------------AAGAG-TGAAATTAGCTTATAAGCAAAG----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAATACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................CTATCAGT-----------ACGCTCCGT----TTACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........GCAGTCGA-----------------TCTATCAGT-----------ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..............GA-----------------TCTATCAGT-----------ACGCTCCGT----..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................................................................................................................................AACATGGTT--CAGATGGG-A.....................................................................................................................................................................................................1811.0010001
........GCAGTCGA-----------------TCTATCAGT-----------ACGCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
...............A-----------------TCTATCAGT-----------ACGCTCCGT----TTACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......TTGCAGTCGA-----------------TCTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................ACGCTCCGT----TTACAAATTAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........GCAGTCGA-----------------TCTATCAGT-----------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
GGA---TTGCAGTCGA-----------------TCTATCAGT-----------GCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCCACCGCTGTA-TGTGTTTTCGCA-------------------------TTGGGCCATTCAC-----CGAATCTAGGGATCCGACCCGCCAGTTTTGACCAACCC---CCA--------------------------------------------------------------------ATAGTGCTATAAAAACATAGTT--CAGATGGG-ACTAACATCTAGTATTCAAACTTTTCTTGTGGTG---GAAAGAGCGACT-------------------------------AAGAG-TGAAATTAGCTTATAAGCTAAG----------------------AAAG-----TGCATTGAAAATTG----------------------TT--CAAA------AATCAAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........GCAGTCGA-----------------TCTATCAGT-----------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCAGTCGA-----------------TCTATCAGT-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000
..............................................................................................................................................................GAATCTAGGGATCCGACC....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........GCAGTCGA-----------------TCTATCAGT-----------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTTCTTGTGGTG---GAAAGAGCGACT-------------------------------AAGA..................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................CGT----TTACCAATTAAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTTCTTGTGGTG---GAAAGAGC.........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................CTATCAGT-----------GCGCTCCGT----TTACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..A---TTGCAGTCGA-----------------TCTATCAGT-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATTCAC-----CGAATCTAGGGA...........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------------------AAAG-----TGCATTGAAAATT..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCGACT-------------------------------AAGAG-TGAAATTA........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTCAC-----CGAATCTAGGGATCCGACCCGC.................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........GTCGA-----------------TCTATCAGT-----------GCGCTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A-----------------TCTATCAGT-----------GCGCTCCGT----TTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................TCTTGTGGTG---GAAAGAGC.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----------------------AAAG-----TGCATTGAAAATTG----------------------TT--...................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AGGAAAAAGGTTTGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGA---TTGCAGTCGA-----------------TCTATCAGC-----------CCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTACCAATGTG-TGTGTTTTCGCA--------------------------------------------GAATTGGGGGTTCCAAA----------------------G--------------------------------------------------------------------GACAAAGTGCTATAAAAACATGGCT--CGGATGGG-ACTGACATCTAGTATTCAGACTGTTATTGTGGTG---GACTGAGCGACT-------------------------------AAGAG-TGAAATTGA----AAAACAAAG----------------------AAAG-----TGCATGGAAAATTC----------------------TT--AAAA------AAACAAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAG----------------------AAAG-----TGCATGGAAAATT..............................................2611.0011000000
....................................ATCAGC-----------CCGCTCCGT----TTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................TTATTGTGGTG---GACTGAGC.........................................................................................................................................................1911.0010001000
..........................................................................................................................................................................................................................................................................................................................................GTGGTG---GACTGAGCGACT-------------------------------AAGAG-TGA.............................................................................................................2611.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG-----TGCATGGAAAATTC----------------------TT--AAAA------.........2411.0010000100
.........................................................................................................................................................................................................................................................................................................................GTATTCAGACTGTTATTGTGGTG---GACT.............................................................................................................................................................2711.0010000010
....................................................................................................................................................................................................................................................................................................................................GTTATTGTGGTG---GACTGA...........................................................................................................................................................1811.0010000010
................................................................................................................................................................................................................................................................................................................................GACTGTTATTGTGGTG---GACT.............................................................................................................................................................2011.0010001000
droYak3
GGA---TTGCAGTCGA-----------------TCTATTAGC-----------CCGCTCCGT----TTACCAATTAAGGAAAAAGGTTTGCTGCCA---------------------------------------------------TTCCC-----AGAACGGGGGTATCCAATCTGCCAGTTTTGACCAACAA---CTA----------------------------------------------------------TCGG--GAACAAAGTGCTATAAAAACATGGAT--GCGATGGG-GTTAACTTCTAGTATTCAAACTGTTATTGTGGTG---GATTGAGCGATT-------------------------------GGAAG-TGAAATTAGTTTATAAGCAAAG----------------------AAAG-----TGCATGGAAAATTG----------------------TT--GAAA------ATCCAAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............GA-----------------TCTATTAGC-----------CCGCTCCGT----TTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00303000000000
..........................................................................................................................................................................................................................................................................................AACATGGAT--GCGATGGG-GTTAACT...............................................................................................................................................................................................2411.00100000010000
..............GA-----------------TCTATTAGC-----------CCGCTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..................................................................TTACCAATTAAGGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................CAAACTGTTATTGTGGTG---GATTG............................................................................................................................................................2311.00100000010000
.................................TCTATTAGC-----------CCGCTCCGT----TTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.............CGA-----------------TCTATTAGC-----------CCGCTCCGT----TTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..................................CTATTAGC-----------CCGCTCCGT----TTACCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................ACTGTTATTGTGGTG---GATTGAGC.........................................................................................................................................................2311.00100000010000
.......TGCAGTCGA-----------------TCTATTAGC-----------CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
droEug1
GGA---CTGCAGTCGACCGA-------------TCCATCAGC-ACG-ATTC--CCGCTCCGT----TTACCTATTAAGGAA-AAGGTTTGCTACCGTTGAT-TGTGTTTTCCCA-------------------------GTGACACAT----ATTCCC----CGAGGGATCCAATCTCTCAGTTTAGACCAACAG---CTA----------------------------------------------------------TCGG---CTCATATTGCTATAAATATGTAGCT--CAGATTGG-TCTAAAATCTAGTATACCAACTGTTATTATAGTG---GAAAGGGTGAAT-------------------------------CTAAG-TGGAATTAGTTAATGAAACA--------------------------AGTTTGGTGAATAGAA-GTTATTGAAAGTGAAGTTATTTGTTCCT--TAAA------AACCAATA-SizeHit CountTotal NormTotal
No Reads
droBia1
GGG---CTGCAGTCGA-----------------TCTATCAGA-----------ACGCTC-GT----TTACCTATTAAGGAAGAAGGTTGGCTACCGATCTG-TT--CTT----------------------------------------TCC-----CGATTCCACGAATCCAATCTCCCAGTTTTGACCATCAAAAG-------------------------------------------------------------T-------GAAGAGCGCTATAAAACCATAGCT--CAGATTGG-GCCAACCTCTAGTTTACCAACTAGTATCATAGTG---AAAAGGTCGTTT-------------------------------TATAG-TGAAATTCGTC---GCACCT--------------------------ATATTAGTGAATAAAT-CATATTTTAAGTGACGTT----------TTCGTA------TCCTAAAGCSizeHit CountTotal NormTotal
No Reads
droTak1
GGA---CTGCAGTCGA-----------------TCTATCAGA-----------ACGCTCCGT----TTACCTATTAAGGAAAAAGGTTTGCTACCGCTGTG-TA--CTTTCCCA-------------------------GTGACACATTCCC-----TGGTTCGAGGGATTCAATCTCTTAGATTTGATTATCAGAAA-------------------------------------------------------------TG-------AAAATTTCTATAAAAACGTAGCT--CAAATTGG-CCTAAAATCTAGTATAACAACATATATTGTGGTG---GAAAGAACGCAT-------------------------------TATAT-TTGAAATAGTTTAAAAACCA--------------------------AGTATAGTGAATAGAA-ATTATTAAAAGTGAAGTT----------TTCGCAGCCCTCAGTCAATATSizeHit CountTotal NormTotal
No Reads
droEle1
GGA---CTGCAGCCGATCTA-------------TCTATCAGC-ACG-AATCCAGCGCTTCGA----TTACCAATTTAGGAAAAAGGTTTGCTACCGATGTG-TA--TTTTCCCAA----GATTGGTGACACATACACAT-------------AGTCCCGATTCGAGGCAACCAATCTCCCAGTT-CGACCCAC----------------------------------------------------------------------------AGAGTGCTATAAAAATGTATCT--GAGATTGGAAGTAACAGCTAGTATAACAAATAACATTAAGGTGT--TAAGGGGCAGTT-------------------------------CAAAA-TAAAA------------CTT--------------------------AGTTTAGTGAAAAACA-GATACCCAAAGAGAAGTT------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
GGC---CTGCAGTCCA-----------------TCTATCAGC-ACG-AATC--CCGCTCCGA----TTACCAATTAAGGAAAAAGGTTTGCTACCGATGTG-TA--TTTTCCCAA----GATTGGCAACAC---------------------AGTCCCGATTCGAGGGAACCAATCTC-------TGACCAAC----------------------------------------------------------------------------AGAGTGCTATAAAAACGTAGCT--CGGATTGG-AGAAAC-TCTAGTATACAAAATAAAATTGTGGTG---AAAAGGGCAAAT-------------------------------TAAAG-TGAAATTCATTGACAAACTG--------------------------AGTTCAATGAGAAAGA-GTTC----------------------T---C-----------T---CACSizeHit CountTotal NormTotal
No Reads
droFic1
GTG---TTGCAGTCGA-----------------TCTATCAGC-GCG-ATTC--CCGCTCCGT----TTGCCAATTAAGGTAAAAGGTTTGCTGG----------------------------------------------TGACACATTTCC-----CGATTCTTCGGAACCAATCTCATGG-TTTGACCATCAG---CTA----------------------------------------------------------TCAGATGGACTGAGTGCTATAAAAACGGTGTT--AGAATCGG-AGCAAGATCTAGTATATCAACTAGTATTGTGGTATTGCAAACGTGAAAT-------------------------------TAAAG-TGAAAACAT-TTAGTGGCTA---------------------------------------------------------AGTT----------CGCGAG------TCCCAATAASizeHit CountTotal NormTotal
No Reads
droKik1
GAA---CTGCAGTCAC-----------------CC--ACGGA-----------GCGCTCCACTAGCTTACCAATTAAGGAGAAAGGTTTGTCACCATT----------------------------------------------------------------TCGGGGAACCAATCTCTTCGTTTTGACCAACCAAGT-------------------------------------------------------------TC-------GGAACTGATATAAAAACCCATTT--TCCATCAT-CGGAACTTTTAGTAATTAAATAATTGTGGCGGTG---AA-GGAGCT----------------------------------GTGAA-TTAAATTAT----CA---------------------------------------------AA-ATTATT-AGTGTGAAGTT----------CTTGTA------------TCCSizeHit CountTotal NormTotal
No Reads
droAna3
GGACCACTGCAGTCGA-----------------TCCATCAGCC-GGATA----CCGCTCCAC-----TTCCAATTAAGGAAAAAGGTTCGACAAGGGTTCGGTGAATCACC-----------------------------------------------ACATCGGGATATCTT-GGTAGC--------------G---CCA---------T----------------------------------------------------------GGATCACTATAAAAGG-CGGTA-GCAAATGGC-AGTTAACTTTATTATTGACTCTAAT-TTTTGGTA---GGA------A--TCATTCGGGTCCTTA-----CTCACAATTTA-----------------------------------TAGGAAAACAAGGAAAAAG-----TGTTTTGATTATTA-----------------GGT--TT--CTTA------AATCAA---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................CATCAGCC-GGATA----CCGCTCCAC-----TTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.GACCACTGCAGTCGA-----------------TCCATCAGCC-GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................................AAAAGGTTCGACAAGGGTTCGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................A------A--TCATTCGGGTCCTTA-----CTCACA...........................................................................................................................2311.001100000
..............GA-----------------TCCATCAGCC-GGATA----CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................................GCC-GGATA----CCGCTCCAC-----TTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...CCACTGCAGTCGA-----------------TCCATCAGCC-GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................ATCAGCC-GGATA----CCGCTCCAC-----T................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
GGACCACTGCAGTCGA-----------------TCCATCAGCC-GGATA----CCGCTCCAC-----TTCCAATTAAGGAAAAAGGTTGGCCAAGGGTTCGGTG------------------------------------------AATCAC-----CAAATCGGGGTATCTTAGGTAGC--------------G---CCA---------T----------------------------------------------------------GGGTCATTATAAAAG--GCGCTAACAAATGAC-AGTTAATTTTAGTAATGACACTACT-TTGTGATG---TACATATAAA--TCGTTCGAGTCCTTAACGTCCTTGC------------------------------------------------ACAAATAAAAGG-----TGTGGTGAAATTTT----------------ATAT--TT--TAAA------AATGAAAGASizeHit CountTotal NormTotal
No Reads
dp5
GGA---CTGCAGTCAATCGAGAGCTGCT--CGAATTATCAGGCACG-TAGC--TCCCTCCAT----TCACCAATAAAGGAAAAAGGTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................GAGCTGCT--CGAATTATCAGGCACG-TAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................CT--CGAATTATCAGGCACG-TAGC--TCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................G-TAGC--TCCCTCCAT----TCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............................................TAGC--TCCCTCCAT----TCACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................GAATTATCAGGCACG-TAGC--TCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............................CGAATTATCAGGCACG-TAGC--TCCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................TATCAGGCACG-TAGC--TCCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........AGTCAATCGAGAGCTGCT--CGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........................................CACG-TAGC--TCCCTCCAT----T.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................ATTATCAGGCACG-TAGC--TCCCTCCAT----..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
........GCAGTCAATCGAGAGCTGCT--CGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................ATCAGGCACG-TAGC--TCCCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................ATTATCAGGCACG-TAGC--TCCCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................GCTGCT--CGAATTATCAGGCACG-TAGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.GA---CTGCAGTCAATCGAGAGCTGCT--C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
GGA---CTGCAGTCAATCGAGAGCTGCT--CGAATTATCAGGCACG-TAGC--TCCCTCCAT----TCACCAATTAAGGAAAAAGGTTTGCA-CGTCCAAA-AATCTCTTCGTAGCTGG--------------------GTGACACATTCGC-----GATTTCCACGGAA----------------------AGT---TCTTTAGTGCCTTATACGGTCAATACTGTGTGGAGTGTGCTGTTTGCTGGCAGTCCAGGTGTG-------AAAA----TATATAAATAAGGCT------------------------------------------------------ACGAAT-------------------------------AAGACCCAAAATTTAGTCATAGGCCAAGGTTTTGGAGTGAAGAT-AATACATAGTTCTGTGCGTTA-----TT--------ATATTTAATTATCCTT---ATA------AAAGGATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................GTGGAGTGTGCTGTTTGCTGGC...........................................................................................................................................................................................................................................................2213.003000003
................................AATTATCAGGCACG-TAGC--TCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........AGTCAATCGAGAGCTGCT--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.GA---CTGCAGTCAATCGAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..................................................................................................................................................................................................................................TGTGGAGTGTGCTGTTTGCT..............................................................................................................................................................................................................................................................2011.001000001
........GCAGTCAATCGAGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................CT--CGAATTATCAGGCACG-TAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.GA---CTGCAGTCAATCGAGAGCTGCT--CGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
............................................................................................................................................................................................................................ATACTGTGTGGAGTGTGCTGTTTGCT..............................................................................................................................................................................................................................................................2611.001000001
.................................ATTATCAGGCACG-TAGC--TCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................GTGGAGTGTGCTGTTTGCTG.............................................................................................................................................................................................................................................................2011.001000001
............TCAATCGAGAGCTGCT--CGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................GGTCAATACTGTGTGGAGTGTGCT.....................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................GTGTGGAGTGTGCTGTTTGC...............................................................................................................................................................................................................................................................2011.001000001
.................................ATTATCAGGCACG-TAGC--TCCCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droWil2
-------------------------------------------------------------T----TGGCCAATTAAGGAAAAAGGTTTGCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GAA---CTGCACTCGATTGTG-----TTAGCAATTTATCACTC--G-AG----TCTCTCATT----TTGTCAATTAAGGAAAGAGGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
GAA---CTGCACTCGATTGTG-----TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004002000000000000000000000000000000000000000000000000000000001010
............................AGCAATTTATCACTC--G-AG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
....................G-----TTAGCAATTTATCACTC--G-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000000000000000000000000000000000000000000000001000
................................................G----TCTCTCATT----TTGTCAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................TTAGCAATTTATCACTC--G-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................ATT----TTGTCAATTAAGGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........GCACTCGATTGTG-----TTAGCAATTTAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................TC--G-AG----TCTCTCATT----TTGTCAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GAA---CTGCATTCGATTGTG-----TGAACAATTCATCAT-----------------TCG-----CCGTTAATTAAGGAAAAAGGTTTGTTGTG-------CCTATCTCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................ATTCATCAT-----------------TCG-----CCGTTAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................GAACAATTCATCAT-----------------TCG-----CC................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................GAACAATTCATCAT-----------------TCG-----CCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......TGCATTCGATTGTG-----TGAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
GAA---CTGCATTCGATCGTG-----CTAACAATTTATCCATCGA---G----CCTCTCATT----TTGTCAATTAAGGAAAAAGGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............GATCGTG-----CTAACAATTTATCCATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 02:19 PM