ID:

dsi_29257

 Coordinate:

2r:6962177-6962353 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2 -28.1 -27.8

Flybase annnotation

exon [2r_6962354_6963326_+]; CDS [2r_6962354_6962601_+]; exon [2r_6961944_6962176_+]; CDS [2r_6961944_6962176_+]; intron [2r_6962177_6962353_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTCATAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTAATCATCCTATTAAATATCAAAGAAACTGTCCAAAAGAATGCATCCTGTTTTAAAACTAATACAGACTGATAATAAGGGGTAAGACGGATGCATACTTCTAGACATATATCTTAGTGTTTTACTTTTGTTAGACCAATACAATACCATTATAAACATGAGATCTTCTTCAGATACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGATGAACTGGAAC
**************************************************((((....))))..............(((((..((((...(((.((((((((.((((((...((.................))...)))))))))))))).)))...))))...((((((.(((((.....((((.........)))).........))))))))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................................TACCGCGCACTGTACAAGTACC........................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGCACTGTACAATTCCCGGCC....................... 21 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATACCGCGCACTGTACAAGTACC........................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........GACGGACGCCCTCCATGTGGACACCAGT................................................................................................................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GATACCGCGCACTGTACAAGTACC........................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....TAAGACGGACGCCCTCCATGTGGACA...................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
.............................................................................................................................................................................................................................................................CCCAGAACTCCGATGAACTGGA.. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................TCAAAGAAACTGTCCAAAA......................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........GACGGACGCCCTCCATGTGGA........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........GACGGACGCCCTCCATGTG.......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........GACGGACGCCCTCCATGTGGACACC.................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGTATTTTACTTTTATTAGACCCA.................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........ACGGACGCCCTCCATGTGG......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................GTCCAAAAGAATGCATCCTGTTTT......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TGTGGACACCAGTTCCGAACCATTGGCAT................................................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CCCAGAACTCCGATGAACTGG... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......AGACGGACGCCCTCCATGTGGACACC.................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGGCATACCGCGCACTGTACAA................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CGCACTGTACAAGTACCGGCCCCAGA.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................CCAGAACTCCGATGAACTGGA.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACCGCGCACTGTACAATTACC........................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTATTTTACTTTTATTAGACCA..................................................................................... 22 2 5 1.00 5 2 0 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACAATACCATCACAAACCTGA.............................................................. 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........CGGACGCCCTCCATGTGGACACCAGT................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATACCGCGCACTGTACAA................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATACCGCGCACTGTACAAGT.............................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GTCCAAAAGAATGCATCCTGTTT.......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCGCGCACTGTACAAGTACCG.......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTGTTTTACTTTTATTAGAACCA.................................................................................... 23 3 4 0.75 3 0 0 0 2 1 0 0 0 0 0 0
..............................................................................................................AACTAATTCAGACTG........................................................................................................................................................ 15 1 12 0.67 8 0 0 0 0 0 0 3 0 0 5 0
.......................................................................................................................................GAAAGACGGATGGATACCTCT......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGACCCCCGATGAACCGGAAC 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................CCATTATAACCATGAGACC.......................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
....................CCATGTGAACAGCAGTT................................................................................................................................................................................................................................................ 17 2 20 0.35 7 0 0 0 0 0 0 5 0 0 2 0
............................................................................................................................................................................ATTTTACTTTTATTAGACCA..................................................................................... 20 2 10 0.30 3 0 0 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTTTACTTTTATTAGACCA..................................................................................... 21 2 7 0.29 2 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................AGTATTTTACTTTTATTAGACCA..................................................................................... 23 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...................TCCATGTGAACAGCAGTT................................................................................................................................................................................................................................................ 18 2 10 0.20 2 0 0 0 0 0 0 0 0 0 2 0
...........................................................CACGCTATTAAATATCAAGG...................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................ATTTTACTTTTATTAGACC...................................................................................... 19 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ACTGTACAATTATCGACCC...................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................ATGGATCCTGTTTTTAA...................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
.............................................................................................................GAACTAATTCAGACTGTTAA.................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................ATTTTACTTTTTTTAGACCCA.................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAAGTATTCTGCCTGCGGGAGGTACACCTGTGGTCAAGGCTTGGTAACCGCACTCATTAGTAGGATAATTTATAGTTTCTTTGACAGGTTTTCTTACGTAGGACAAAATTTTGATTATGTCTGACTATTATTCCCCATTCTGCCTACGTATGAAGATCTGTATATAGAATCACAAAATGAAAACAATCTGGTTATGTTATGGTAATATTTGTACTCTAGAAGAAGTCTATGGCGCGTGACATGTTCATGGCCGGGGTCTTGAGGCTACTTGACCTTG
**************************************************((((....))))..............(((((..((((...(((.((((((((.((((((...((.................))...)))))))))))))).)))...))))...((((((.(((((.....((((.........)))).........))))))))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...............................................CCGCACTCATTAGTAGGATAA................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................TAGGTATGAAGATATGTA................................................................................................................... 18 2 18 1.83 33 0 33 0 0 0 0 0 0 0
...................................................................................ACAGGTTTTCTTACGTAGGAC............................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................CCGCACTCATTAGTAGGATA.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TCATGGCCGGGTTATTGTG.............. 19 3 14 0.71 10 2 0 6 2 0 0 0 0 0
.........................................................................................................................TGACTATTATTCCCAACGC......................................................................................................................................... 19 3 20 0.45 9 2 0 0 4 0 0 3 0 0
..........................................................................................................................................................................................................................................AGTGACATGTTCATG............................ 15 1 9 0.33 3 0 1 0 0 1 1 0 0 0
.........................................................................................................AAATTTTGAGTATGTC............................................................................................................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CAATCTGGGTATGTTTTGGC.......................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................GACGCGTGACATGTT................................ 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................TGAAGATCTTTATATAAAA............................................................................................................ 19 2 20 0.10 2 0 0 0 0 2 0 0 0 0
..............................................................................................TAAGTAGGTCAAAATTTT..................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 2 0 0 0 0
.........................................................................................TTTCTTACGCAGGAGAAA.......................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................GCGCGAAGAAGTCTATGGC............................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................TCATGGCCGGGTTATTG................ 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0
..........................................................................................................AAGTTTCATTATCTCTGACT....................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................TTTATAGTTTGTTTGACGG.............................................................................................................................................................................................. 19 2 18 0.06 1 0 0 0 0 0 0 0 0 1
........................................................CTAGCAGGATAATTTAT............................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6962127-6962403 + dsi_29257 CTTCATAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTAATCATCCTATTA-----------------A----------------------------------------------------------------------------AT-ATCAAAGAAACTGTCCAAAAGAATGCATCC--TGTTTTAAAACTAATACAGACTGATAATAAGGGGTAAGACGG--------------------ATGCATACTTCTAGACATATATCTTAG--TGTTTTACTTTTGTTAGACCAATACA--------AT--------------------------------------------ACCATTATA---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTCAGATACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGATGAACTGGAAC
droSec2 scaffold_1:3800831-3801068 + CTTCATAAGACAGACGCCCTCCATGTGGACACCAGTTCCGAGCCATTGGCGTGAGTAATCATTCTATTA-----------------A----------------------------------------------------------------------------AT-ATCAAAGAAACTGTCCAAAAG----------------------------------ATAATAAGTTGTAAGACGG--------------------A-------TTCTAGACATATTTCTTAG--TGTTTTACTTTGGTTAGACCAATACA--------AT--------------------------------------------CCAATTATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTTAGATACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGATGAACTGGAAC
dm3 chr2R:6193426-6193699 + CTTCACAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTAATCCTA---TCA-----------------A----------------------------------------------------------------------------AT-ATCAATGAAACTGTCCAAAAGAATGCATCC--TGTTTTGAGACTATAACAGACTGAAAATAGGGGATAAGACAG--------------------ATGCATTCTTCTAGACATCTTTCTAAG--TGTATTACTTTGGTTAGATCAAAACA--------AT--------------------------------------------ACCATTATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTTAGGTACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAAC
droEre2 scaffold_4929:8181378-8181650 - CTTCACAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTTATCCTA---CCA-----------------C-----------------------------------------------------------CTA----------CCAAAGCTACCAAGAAACTGTCTAATGGGGTGCATCA--TGTTTTGCAACTTGCAAAGAACGATG------------------------------------ATACATACTATTAGACATCCTTGTTAG--AGTTTA-GCTTGGTTAGGCGAATGCATGTTTCGGAT--------------------------------------------CCAATCATT---------------------AATTTGA-------------GATC------------------------------------TA-----------------CTCCAGGTACCGCTCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAAC
droYak3 2L:18821288-18821528 + CTGCACAAGACGGATGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTTGTCCACCT-----------------------------------------------------------------------------------A----------CCCAAT-----------CTGTTTAAAAGTGGGCATCA--CGTTTCAAAACTTGTAAA----------------TAACACTG--------------------ATGCATACTTCTAGACATCTTTGTTAG--AGTTTAAATT------------------TTTTGGAG--------------------------------------------CCAATCATT---------------------AATTTGA-------------GATC------------------------------------TA-----------------CTTTAGGTACCGCGCACTGTACAAGTATCGGCCACAGAACTCCGACGAACTGGAAC
droEug1 scf7180000409462:3692473-3692547 - ATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------AATCTGA-------------AAAA------------------------------------TA-----------------ATTTAGTTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAAC
droBia1 scf7180000301754:132201-132508 - CTCCACAAGACGGACGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATACAAAT-----------------------------------------------------------------------------------A----------AGCT-T-----------GTGCCTAAAAGTATGCTACAAACGTTTTGAGTACAGCACAGAAGG----GAGGGAATAAGATGT---------ATAACA-TTTACTGCATACTTTTAGGAGTCATTTGAAAGGAATTTAAAAA------------------CTTACGAGATTTTAGTGGCACATGACT-AGGTCTGTGATGGTGGATTATA-AAAAACCATT---------------------AATGTAA-------------TATC------------------------------------TC-----------------CTATAGATACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAAC
droTak1 scf7180000415363:4396-4729 - CTCCACAAGACGGACGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATCCAGGG--GATATTATATGATATGAAAAAAGAAAT---TAAATTTGTCTGTGAAATA----ACATTAAGCGTTATAGCTTCAAATTCCTATAAAAGTAGCAGCT-T-----------GCG------------------------CAAAAATTAT-------------------------GT---------GTAACATTTTACTGCACACTTTTAGACACCATTTTAAAGGAATTTTAAAA------------------C------------AGAGGTTCCTTTCTCAGTTCTTTAA--GTGCGTTACAGAAAAATCATT---------------------AATATTT-------------TAC--------------------------------------C-----------------TTTTAGGTATCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAAC
droEle1 scf7180000490858:16608-16667 + CTCCACAAGACGGACGCCCTGCATGTGGACACCAGTTCCGAGCCATTGGCGTGAGTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000769355:48640-48807 - CTCCACAAGACGGACGCCCTGCATGTGGACACCAGTTCCAAGCCATTGGCGTGAGTTATCCAAA-------------------------------------------------------------------------------------------------------------------------CG----------------------------------ATG--------------------------------------------------------------------------------------------------------------GGTCCGTTTTAAATCCT----------------------GATTT---------------------TGTATTA-------------CATATCT----------------------------TACTATT-----------------TTGCAGTTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAGC
droFic1 scf7180000454066:1519182-1519514 - ATTCACAAGACGGACGCACTACATGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATCATACTTTAA-----------------AAAGAAAATCCCAATTTAGACGGTGGACTACTTGAAACTCTGAGTTTTAGAAT--------------------------------------TACGTAGAAGTGTAC----------------------------------------TAAGATAGATTTCCAAATTAAAA-TGTTCTGCATACATTTAGATACTTCTAGTGGGCGATTTTAAAA------------------C-----------------------TCTAAGATCTTTCA--AT-------------------------------------------ATTTTGAACTAATAATTGATC--TTCTTTGTATTGTAACCATCCAAATTATAAACTATA-----------------TTTTAGGTACCGCGCCCTGTACAAGTACCGGCCGCAGAACTCCGACGAACTGGAAC
droKik1 scf7180000302817:529462-529537 + ATTCACAAGACGGATGCCCTTCATGTGGACACCAGCTCGGAGCCCTTGGCGTAAGTCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT---------------------AATATAA-------------AATA------------------------------------T--------------------------------------------------------------------------
droAna3 scaffold_13266:4656492-4656551 + TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------TTTCAGGTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAGCTGGAGC
droBip1 scf7180000395751:464688-464744 + CTGCAGAAGACGGATGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:7253466-7253528 - CTGCACAAGACGGACGCACTCCACGTGGACACCAGCTCCGAGCCACTGGCGTGAGTGACCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:7453658-7453720 - CTGCACAAGACGGACGCACTCCACGTGGACACCAGCTCCGAGCCACTGGCGTGAGTGACCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004822:2610424-2610592 - TTGCACAAAACCGATGCCCTCCATGTGGATACCACCTCCGAGCCAGTGGCGTAAGTTATCAATCA--GA-----------------A----------------------------------------------------------------------------AC-AGCTATGAAGTTGTCTTTAA------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------CTAATG-TT--------------------AATCCCCA-------------AATT------------------------------------CC-----------------CTTTAGTTATCGCGCCCTCTACAAATACCGGCCACAAAATTCCGATGAGTTGGAAC
droVir3 scaffold_12875:16093729-16093785 + CTGCACAAAACAGACGCCCTTCATGTGGACACCAGCTCGGAGCCCTTGACGTACGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:7681372-7681428 - CTGCACAAGACAGATGCACTCCATGTGGACACCAGCTCCGAGCCACTCACGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:12911371-12911544 + CTGCACAAGACAGACGCTCTGCACGTGGACACCAGCTCGGAGCCAGTGACGTGAGTGGTGAAC---------------------------------------------------TAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATAAATATTTGACTATTGATTA-------------AATT------------------------------------TCGTTTTGTAATTGGAAAATCACAGATATCGGGCACTGTACAAGTACCGACCGCAGAACTCGGATGAGCTGGAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCATAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTAATCATCCTATTA-----------------A----------------------------------------------------------------------------AT-ATCAAAGAAACTGTCCAAAAGAATGCATCC--TGTTTTAAAACTAATACAGACTGATAATAAGGGGTAAGACGG--------------------ATGCATACTTCTAGACATATATCTTAG--TGTTTTACTTTTGTTAGACCAATACA--------AT--------------------------------------------ACCATTATA---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTCAGATACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGATGAACTGGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGCGCACTGTACAAGTACC...........................2213.00300300000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCGCACTGTACAAGTACC...........................2313.00300300000000000000
........GACGGACGCCCTCCATGTGGACACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCGCGCACTGTACAAGTACC...........................2412.00200200000000000000
.....TAAGACGGACGCCCTCCATGTGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAACTCCGATGAACTGGA..2212.00200200000000000000
.......................................................................................................................................................................TCAAAGAAACTGTCCAAAA............................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
........GACGGACGCCCTCCATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
........GACGGACGCCCTCCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
........GACGGACGCCCTCCATGTGGACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.........ACGGACGCCCTCCATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
..................................................................................................................................................................................GTCCAAAAGAATGCATCC--TGTTTT..........................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAACTCCGATGAACTGG...2111.00100100000000000000
.......AGACGGACGCCCTCCATGTGGACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTGTACAAGTACCGGCCCCAGA..................2611.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAACTCCGATGAACTGGA..2111.00101000000000000000
..........CGGACGCCCTCCATGTGGACACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCGCACTGTACAA................................1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCGCACTGTACAAGT..............................2011.00101000000000000000
..................................................................................................................................................................................GTCCAAAAGAATGCATCC--TGTTT...........................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGCACTGTACAAGTACCG..........................2111.00101000000000000000
droSec2
CTTCATAAGACAGACGCCCTCCATGTGGACACCAGTTCCGAGCCATTGGCGTGAGTAATCATTCTATTA-----------------A----------------------------------------------------------------------------AT-ATCAAAGAAACTGTCCAAAAG----------------------------------ATAATAAGTTGTAAGACGG--------------------A-------TTCTAGACATATTTCTTAG--TGTTTTACTTTGGTTAGACCAATACA--------AT--------------------------------------------CCAATTATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTTAGATACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGATGAACTGGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTCCGATGAACTGG...1911.0010010
.......AGACAGACGCCCTCCATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
........GACAGACGCCCTCCATGTGGACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
........................GTGGACACCAGTTCCGAGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCGCACTGTACAAGTA.............................2111.0010001
.......................TGTGGACACCAGTTCCGAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
CTTCACAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTAATCCTA---TCA-----------------A----------------------------------------------------------------------------AT-ATCAATGAAACTGTCCAAAAGAATGCATCC--TGTTTTGAGACTATAACAGACTGAAAATAGGGGATAAGACAG--------------------ATGCATTCTTCTAGACATCTTTCTAAG--TGTATTACTTTGGTTAGATCAAAACA--------AT--------------------------------------------ACCATTATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTTAGGTACCGCGCACTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCGCACTGTACAAGTAC............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CTTTA...................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTACCGGCCCCAGAACTCCGAC..........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TCTAGACATCTTTCTAAG--TGT..................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200
............................................................................................................................................................................................................................................................................................AAG--TGTATTACTTTGGTTAG....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCGGCCCCAGAACTCCG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAGACTGAAAATAGGGGATAAGAATC--------------------..................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGTACAAGTACCGGCCG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................TGAAAATAGGGGATAAGACAG--------------------ATGC..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACCGGCCCCAGAACTCCGAC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGCCCCAGAACTCCGACGAAC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTCCATGTGGACACCAGTTCCGAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTAGATCAAAACA--------AT--------------------------------------------ACCA.................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..............................................................A---TCA-----------------A----------------------------------------------------------------------------AT-ATCAATGAAACTGTC.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCGCACTGTACAAGTACC...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACCAGTTCCGAACCATTGGCGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCCATGTGGACACCAGTTCCGAACCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGGCCCCAGAACTCC.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGTATTACTTTGGTTAGATCA................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AG--TGTATTACTTTGGTTAGATC.................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATGTGGACACCAGTTCCGAACATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAAGACGGACGCCCTCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGGTTAGATCAAAACA--------AT--------------------------------------------AC...................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GACGGACGCCCTCCATGTGGACACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATT---------------------AACATGA-------------GATC------------------------------------TT-----------------CT......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................CCATGTGGACACCAGTTCCGAACCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACGGACGCCCTCCATGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................AACAGACTGAAAATAGGGGAT.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droEre2
CTTCACAAGACGGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTTATCCTA---CCA-----------------C-----------------------------------------------------------CTA----------CCAAAGCTACCAAGAAACTGTCTAATGGGGTGCATCA--TGTTTTGCAACTTGCAAAGAACGATG------------------------------------ATACATACTATTAGACATCCTTGTTAG--AGTTTA-GCTTGGTTAGGCGAATGCATGTTTCGGAT--------------------------------------------CCAATCATT---------------------AATTTGA-------------GATC------------------------------------TA-----------------CTCCAGGTACCGCTCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...CACAAGACGGACGCCCTCCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.TTCACAAGACGGACGCCCTCCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.................................AGTTCCGAACCATTGGCGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................................TGGTTAGGCGAATGCATGTTTC.....................................................................................................................................................................................................................2211.0011000000
droYak3
CTGCACAAGACGGATGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTGAGTTGTCCACCT-----------------------------------------------------------------------------------A----------CCCAAT-----------CTGTTTAAAAGTGGGCATCA--CGTTTCAAAACTTGTAAA----------------TAACACTG--------------------ATGCATACTTCTAGACATCTTTGTTAG--AGTTTAAATT------------------TTTTGGAG--------------------------------------------CCAATCATT---------------------AATTTGA-------------GATC------------------------------------TA-----------------CTTTAGGTACCGCGCACTGTACAAGTATCGGCCACAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCGGCCACAGAACTCC.............2012.00220000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCGCACTGTACAAGTATCGGC........................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------TA-----------------CTTTAGGTACCGCGCACTGTACA.................................2711.00101000000000
..................CTCCATGTGGACACCAGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGGCCACAGAACTC..............1811.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGAACTCCGACGAACT.....2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATCGGCCACAGAACTCC.............2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGGCCACAGAACTCC.............1911.00110000000000
droEug1
ATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------AATCTGA-------------AAAA------------------------------------TA-----------------ATTTAGTTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotal
No Reads
droBia1
CTCCACAAGACGGACGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATACAAAT-----------------------------------------------------------------------------------A----------AGCT-T-----------GTGCCTAAAAGTATGCTACAAACGTTTTGAGTACAGCACAGAAGG----GAGGGAATAAGATGT---------ATAACA-TTTACTGCATACTTTTAGGAGTCATTTGAAAGGAATTTAAAAA------------------CTTACGAGATTTTAGTGGCACATGACT-AGGTCTGTGATGGTGGATTATA-AAAAACCATT---------------------AATGTAA-------------TATC------------------------------------TC-----------------CTATAGATACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotal
No Reads
droTak1
CTCCACAAGACGGACGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATCCAGGG--GATATTATATGATATGAAAAAAGAAAT---TAAATTTGTCTGTGAAATA----ACATTAAGCGTTATAGCTTCAAATTCCTATAAAAGTAGCAGCT-T-----------GCG------------------------CAAAAATTAT-------------------------GT---------GTAACATTTTACTGCACACTTTTAGACACCATTTTAAAGGAATTTTAAAA------------------C------------AGAGGTTCCTTTCTCAGTTCTTTAA--GTGCGTTACAGAAAAATCATT---------------------AATATTT-------------TAC--------------------------------------C-----------------TTTTAGGTATCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotal
No Reads
droEle1
CTCCACAAGACGGACGCCCTGCATGTGGACACCAGTTCCGAGCCATTGGCGTGAGTTATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTCCACAAGACGGACGCCCTGCATGTGGACACCAGTTCCAAGCCATTGGCGTGAGTTATCCAAA-------------------------------------------------------------------------------------------------------------------------CG----------------------------------ATG--------------------------------------------------------------------------------------------------------------GGTCCGTTTTAAATCCT----------------------GATTT---------------------TGTATTA-------------CATATCT----------------------------TACTATT-----------------TTGCAGTTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAGCSizeHit CountTotal NormTotal
No Reads
droFic1
ATTCACAAGACGGACGCACTACATGTGGACACCAGTTCCGAGCCATTGGCGTAAGTTATCATACTTTAA-----------------AAAGAAAATCCCAATTTAGACGGTGGACTACTTGAAACTCTGAGTTTTAGAAT--------------------------------------TACGTAGAAGTGTAC----------------------------------------TAAGATAGATTTCCAAATTAAAA-TGTTCTGCATACATTTAGATACTTCTAGTGGGCGATTTTAAAA------------------C-----------------------TCTAAGATCTTTCA--AT-------------------------------------------ATTTTGAACTAATAATTGATC--TTCTTTGTATTGTAACCATCCAAATTATAAACTATA-----------------TTTTAGGTACCGCGCCCTGTACAAGTACCGGCCGCAGAACTCCGACGAACTGGAACSizeHit CountTotal NormTotal
No Reads
droKik1
ATTCACAAGACGGATGCCCTTCATGTGGACACCAGCTCGGAGCCCTTGGCGTAAGTCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT---------------------AATATAA-------------AATA------------------------------------T--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------TTTCAGGTACCGCGCCCTGTACAAGTACCGGCCCCAGAACTCCGACGAGCTGGAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGCGCCCTGTACAAGTACC...........................2212.002000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCGGCCCCAGAACTCC.............2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTACCGGCCCCAGAAC................2211.001000001
droBip1
CTGCAGAAGACGGATGCCCTCCACGTGGACACCAGTTCCGAGCCATTGGCGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTGCACAAGACGGACGCACTCCACGTGGACACCAGCTCCGAGCCACTGGCGTGAGTGACCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................ACGTGGACACCAGCTCCGAGCCACTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.......AGACGGACGCACTCCACGTGGACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.................ACTCCACGTGGACACCAGCTCCGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
...........................GACACCAGCTCCGAGCCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................CACCAGCTCCGAGCCACTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
CTGCACAAGACGGACGCACTCCACGTGGACACCAGCTCCGAGCCACTGGCGTGAGTGACCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................CGTGGACACCAGCTCCGAGCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
................................CAGCTCCGAGCCACTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
TTGCACAAAACCGATGCCCTCCATGTGGATACCACCTCCGAGCCAGTGGCGTAAGTTATCAATCA--GA-----------------A----------------------------------------------------------------------------AC-AGCTATGAAGTTGTCTTTAA------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------CTAATG-TT--------------------AATCCCCA-------------AATT------------------------------------CC-----------------CTTTAGTTATCGCGCCCTCTACAAATACCGGCCACAAAATTCCGATGAGTTGGAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................GATACCACCTCCGAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.00400310
...................TCCATGTGGATACCACCTCCGAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACAAAATTCCGATGAGTTGGA..2511.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCA-------------AATT------------------------------------CC-----------------CTTTAG..................................................1811.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAATACCGGCCACA....................1811.00100010
droVir3
CTGCACAAAACAGACGCCCTTCATGTGGACACCAGCTCGGAGCCCTTGACGTACGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................CAGCTCGGAGCCCTTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003120000000000000000000000000000000000000000000000000000000000000
.......................TGTGGACACCAGCTCGGAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
......................ATGTGGACACCAGCTCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................TCATGTGGACACCAGCTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
.........................TGGACACCAGCTCGGAGCCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
............................ACACCAGCTCGGAGCCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
............GACGCCCTTCATGTGGACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.......AAACAGACGCCCTTCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................CTTCATGTGGACACCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.............ACGCCCTTCATGTGGACACCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
......AAAACAGACGCCCTTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...........................GACACCAGCTCGGAGCCCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
............................ACACCAGCTCGGAGCCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..........CAGACGCCCTTCATGTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...........AGACGCCCTTCATGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
CTGCACAAGACAGATGCACTCCATGTGGACACCAGCTCCGAGCCACTCACGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................GACACCAGCTCCGAGCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.......................TGTGGACACCAGCTCCGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................ATGTGGACACCAGCTCCGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............TGCACTCCATGTGGACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CTGCACAAGACAGACGCTCTGCACGTGGACACCAGCTCGGAGCCAGTGACGTGAGTGGTGAAC---------------------------------------------------TAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAAATAAATATTTGACTATTGATTA-------------AATT------------------------------------TCGTTTTGTAATTGGAAAATCACAGATATCGGGCACTGTACAAGTACCGACCGCAGAACTCGGATGAGCTGGAGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACTCGGATGAGCTG....1911.00101
........GACAGACGCTCTGCACGTGGACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTACCGACCGCAGAACTC..............2111.00110
........GACAGACGCTCTGCACGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCACTGTACAAGTACCGACC.......................2311.00110
.......AGACAGACGCTCTGCACGTGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101

Generated: 05/19/2015 at 12:22 PM