ID:

dsi_29180

 Coordinate:

3l:7387444-7387604 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.1 -30.1 -30.0

Flybase annnotation

exon [3l_7386768_7387443_+]; CDS [3l_7386768_7387443_+]; CDS [3l_7387605_7387695_+]; exon [3l_7387605_7387695_+]; intron [3l_7387444_7387604_+]

No Repeatable elements found

mature
  1. dsi_29180  3l:7387464-7387481 +
  2. 3r:15655756-15655773 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGGGGCACTGGATGACCCATGGAAAGCACTCGGAACTGGCGCCATTAAGGTAAGCGGTATATTAATCTTTAAATTGATTATAAGATTATAATCAGTTTATTGAACTGCATTGATAATTAGATTTAATATGAGCTAATTCAATAATATAATTAAATTTTGTACACTATGTGAATATATTTATATGATGTAAAAAATTCTTGTTAATTTCAGAAACAATCCCCCGAGTTTGATGAGTTTGATTTGATTACCAACCGGAACAA
**************************************************....(((((.......((..(((((((((((((....)))))))))))))..)))))))(((((..(((((.((((...))))))))))))))..........((((((.((((.((((((((....)))))))).)))).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
..............................................................................................................................................................................................................................TGAGTTTGATGAGTTTGAGTT.................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................AAGCACTCGGAACTGGCGCCATTAAG................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................ATGGAAAGCACTCGGAACTGGCGCCATT...................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...GGGCACTGGATGACCCATGGAA............................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................CTGGCGCCATTAAGGTAAG.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................TGGAAAGCACTCGGAACTGGCGCCATTAA.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................TAAATTGATTATAAGATT............................................................................................................................................................................. 18 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
....................TGGAAAGCACTCGGAACTGGCGCCATT...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................CACTCGGAACTGGCGCCA........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................ATAAGCGGTATATTAATAATTAAAT.......................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGTGTGATGAGTTTGA..................... 17 2 20 0.85 17 0 17 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATGTAAGAAGTCCTTGTTA......................................................... 19 3 20 0.40 8 0 0 2 0 1 1 0 0 0 3 1
................................................................................................................................................................................................................................AGTGTGATGAGTTTGA..................... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTATATGATGGAAAAA................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................TATTGAACTGGATTGAT.................................................................................................................................................. 17 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGTTGGATGAGTTTGA..................... 16 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGTGTTTGATTTGATTGCCAAA........ 22 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
..................................GACTGGCGCGATTAAGGTC................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
............................ATTCAGAACTGGCGCCA........................................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................TATATTAATCTTTATA........................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................AAGTGTGATGAGTTTGACT................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........ATGGATGGCCCATGGAA............................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCCCCCGTGACCTACTGGGTACCTTTCGTGAGCCTTGACCGCGGTAATTCCATTCGCCATATAATTAGAAATTTAACTAATATTCTAATATTAGTCAAATAACTTGACGTAACTATTAATCTAAATTATACTCGATTAAGTTATTATATTAATTTAAAACATGTGATACACTTATATAAATATACTACATTTTTTAAGAACAATTAAAGTCTTTGTTAGGGGGCTCAAACTACTCAAACTAAACTAATGGTTGGCCTTGTT
**************************************************....(((((.......((..(((((((((((((....)))))))))))))..)))))))(((((..(((((.((((...))))))))))))))..........((((((.((((.((((((((....)))))))).)))).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
............................................................................................................................................................................................................................................AAATAAACTAATGGTTGTCCT.... 21 2 3 0.33 1 1 0 0
.................................................................................................................TATTACTCTAAATTAAACT................................................................................................................................. 19 2 17 0.12 2 2 0 0
..........................................................................................................................................................................................CCATTTTTTAAGAACA........................................................... 16 1 18 0.06 1 0 1 0
...........................................................................................................................................................................................CATTTTTTAAGAGCAA.......................................................... 16 1 18 0.06 1 1 0 0
................................................................TTCGAAATTTAACCAATCTT................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 07:26 AM