ID:

dsi_29174

 Coordinate:

3l:11532605-11532754 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.7 -16.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCAAATCCTCACCGAGCACGGACTTAGATGTTCAAAAATTCTTTGAACATTATTTGCGAAACTTCTACAAAATGCCGGAAAAATTTATCAACGATTGCGCAATTAAAATCCATTTAAAGCTGTAGCCTTTTAATGTTTAAATGCAATTTGTTGTCATTAATATAATAATATATAGTAATATAGTTGTATACGACTTACAGGATCCCGTTATCAAGGACAATTACATCAAAGAAGTGGAGGAGATGACCTA
**************************************************..(((.((.................)).))).......(((((((((((...(((((...((((.(((((....)).))).))))))))).))))).))))))......(((((((.((((......)))).)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................................................TTGTATACGACTTAGA................................................... 16 1 2 14.00 28 28 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGTATACGACTTAGATGT................................................ 19 3 20 6.15 123 2 51 64 0 0 4 1 1
.......................................................................................................................................................................................TTGTATACGACTTAGATG................................................. 18 2 2 1.50 3 0 2 0 0 1 0 0 0
..................................................................................................................................................................................................................TCAAGGACAATTACATCACAGAAGTGGA............ 28 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................TGCCGGAAAAATTTATCAACGAT........................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGTATACGACTTAGAT.................................................. 17 2 14 1.00 14 12 0 0 1 1 0 0 0
...................................................................................................................................................................................................TACAGGATCCCGTTATCAAGG.................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
..................CGGACTTAGATGTTCAAAAATTCTTCGAACA......................................................................................................................................................................................................... 31 1 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................TGTATACGACTTAGA................................................... 15 1 6 0.50 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGTATACGACTTAGATGC................................................ 19 3 19 0.32 6 0 3 3 0 0 0 0 0
..............................TTCGAAAATTCTCTGACCATT....................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TTGTATACGACTTAGATGTT............................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................TTGTATACGACTTAG.................................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TTTGTATACGACTTA..................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0
.............................................................................................................CCATTTAAAGCGGTA.............................................................................................................................. 15 1 18 0.06 1 0 0 0 0 1 0 0 0
.......................TTAGATGTTCAAAAGTA.................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................GCATTTGAAGCTGTAGCCC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

CGTTTAGGAGTGGCTCGTGCCTGAATCTACAAGTTTTTAAGAAACTTGTAATAAACGCTTTGAAGATGTTTTACGGCCTTTTTAAATAGTTGCTAACGCGTTAATTTTAGGTAAATTTCGACATCGGAAAATTACAAATTTACGTTAAACAACAGTAATTATATTATTATATATCATTATATCAACATATGCTGAATGTCCTAGGGCAATAGTTCCTGTTAATGTAGTTTCTTCACCTCCTCTACTGGAT
**************************************************..(((.((.................)).))).......(((((((((((...(((((...((((.(((((....)).))).))))))))).))))).))))))......(((((((.((((......)))).)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
.......................................................................................................ATTTTAGGTAAATTTCGACAT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...............CGTGCCTGAATCTACAAGTTT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..................GCCGGAATCTACTAGTTT...................................................................................................................................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0
.....AGGAGTGGCTCGTGCCTGAATCTACAAGT........................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0
..................................................ATAAATGATCTGAAGATGTTTT.................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................................................TGGTGAATGTCATGGGGCAA......................................... 20 3 6 0.17 1 0 0 0 0 1 0
..................................................................................TAAACAGTTGCTAACGGG...................................................................................................................................................... 18 2 12 0.08 1 0 1 0 0 0 0
....................................................................TTTGACGGCCTTTTGTAATA.................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:29 AM