ID:

dsi_29162

 Coordinate:

3r:4577373-4577553 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4577215_4577372_-]; CDS [3r_4577215_4577372_-]; CDS [3r_4577554_4578160_-]; exon [3r_4577554_4578160_-]; intron [3r_4577373_4577553_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAGGAGGTGGCCAAGGCGCTCTACGAGAGCGAGGAACCCTTCCAGAACGGTAAATCAAAATGGAATGACAGCCCCACCTGAAAGTGTCGTGCCGGTGGGATCTAGACAATTTATGCAAATCCGAAATCCATTCGCTTGGCTGAATTTAAATAATTGAATTGCACATTCATGGCCCCCGACGCTGCTGAAAATGATAAATGACGTTAGCCCTTATGACCTCTCCTCCACAGTGTCCTGCCCCCTGACCAACAGCATGGCCCTGGTCTACGATGGCGTCCAG
**************************************************...........((((....((((..........(((((((.(((((((.((((.....((((((..(((...((((.....)))).)))..)))))).........)).)).))).....))))...)))))))))))............((.((((.......)))).))...))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 GSM343915
embryo
..............................................................................................................................................................ATTGCACACTCAAGGCCC......................................................................................................... 18 2 4 1.25 5 5 0 0 0 0 0 0
.......................ACGAGAGCGAGGAACCCT................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................ATGTCTTGCCGGCGGGATCTA................................................................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................ATTGCACACTCAAGGCCCT........................................................................................................ 19 3 20 0.55 11 11 0 0 0 0 0 0
......................................................................................................................................................................................CTGCAGAAATTGATAGATGAC.............................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0
....................................................................................GTGTCGGGCCGGTGG...................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 1 0 0 0
...................................................................................TGTGTCGTGCCGGTG....................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0
.CAGGAGGTGGGCAAGGCGCAA................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0
..............................................................................................................................................................ATTGCACACTCAAGGCC.......................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0
.....................CTACGAGAGCGAGCACTCCT................................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 1

Anti-sense strand reads

CGTCCTCCACCGGTTCCGCGAGATGCTCTCGCTCCTTGGGAAGGTCTTGCCATTTAGTTTTACCTTACTGTCGGGGTGGACTTTCACAGCACGGCCACCCTAGATCTGTTAAATACGTTTAGGCTTTAGGTAAGCGAACCGACTTAAATTTATTAACTTAACGTGTAAGTACCGGGGGCTGCGACGACTTTTACTATTTACTGCAATCGGGAATACTGGAGAGGAGGTGTCACAGGACGGGGGACTGGTTGTCGTACCGGGACCAGATGCTACCGCAGGTC
**************************************************...........((((....((((..........(((((((.(((((((.((((.....((((((..(((...((((.....)))).)))..)))))).........)).)).))).....))))...)))))))))))............((.((((.......)))).))...))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 O001
Testis
...............................................................................................................................................................................................................CGGGAATAGTCAAGAGGAGGT..................................................... 21 3 4 6.25 25 2 8 0 1 5 5 1 1 1 1 0 0 0
........................................................................................................................................................................GTACCGGGGGTTGCGACGAC............................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACTGGAAAGGAGGTGTCACA............................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................ACCCTAGATCTGATAAATA...................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGAATACTGACGAGGAGGGG.................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CCGCGGGCTGCGACG............................................................................................... 15 1 9 0.44 4 2 0 0 0 0 0 0 0 1 0 0 1 0
..........................................................................................................................................................................ACCGCGGGCTGCGACG............................................................................................... 16 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGAGAGGAAGTGTCA................................................. 15 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ACCGCGGGCTGCGACGAAT............................................................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CGGGGGCTGCGACGAATT........................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................GCGAACCAACTTAAA..................................................................................................................................... 15 1 18 0.22 4 0 0 0 0 0 0 4 0 0 0 0 0 0
............................................................................................................................................................................CGCGGGCTGCGACGACTC........................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GCAAGGGAACCGACTTAA...................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ACCGCGGGCTGCGACGAA............................................................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CGCGGGCTGCGACGACTG........................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CCGCGGGCTGCGACGA.............................................................................................. 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACCATAGATCTGATAAAT....................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................CGAGATACTCTAGCTCCT..................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................CGCGGGCTGCGACGTCT............................................................................................ 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GGGGTGGACTGTTACAG................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................CGCGGGCTGCGACGACA............................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 09:57 AM