ID:

dsi_29131

 Coordinate:

3l:7385741-7385890 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.1 -9.1 -9.0

Flybase annnotation

CDS [3l_7385891_7385979_+]; exon [3l_7385891_7385979_+]; intron [3l_7385357_7385890_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAAAAAAAAACCAAATCCCAAATTTACCAAACACCGATTCGCATTAACATCAAAGCGGGACTCTTCGATAGCAAGACTAAACCTAAGATCTAATAACCCTTTTCACAATCCAACCAAAAACCCCCCTATCCCACTTAACGGGTTGGATCAAGAAGATATAGCCATGTTAACACCCCTTTCCATCATTCTTGTCACACAGTGAGAAAGCAAAAGGACGATATGCAGGTCAATGTCGCTGGTCTGCGCAGA
********************************************************************************************************************************.......(((((((((((.(((.....))).))))).)))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................ATCCCACTTAACGGGTTGGAT..................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................................................AAGGACGATATGCAGGTCAATGTCG.............. 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................CCTTTCCATCATTCTTGTCACACAG.................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TGCAGGTCAATGTCGCTGGTCT....... 22 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................ATGCAGGTCAATGTCGCTG........... 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................AGAAGATATAGCTATGT.................................................................................. 17 1 20 0.85 17 0 17 0 0 0 0
..................................................................................................................................................................................................CTGCAGTGAGAAAGCAAAAGGA.................................. 22 3 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................................GGTTGGATCAAGAAA.............................................................................................. 15 1 8 0.25 2 0 1 0 0 1 0
..............................................AACATCTAAGCGGGA............................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 1 0
......................................................................................................................................................AAGGAGATATACCCATG................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0
..............................................................................................................................................................................ATCTTTCCATCATTATTGTC........................................................ 20 3 16 0.06 1 0 1 0 0 0 0
......................................................................................................................................................................ATTAACACCCTTTTCAATCA................................................................ 20 3 19 0.05 1 0 0 0 0 0 1
...............................................ACGTAAAAGCGCGACTCT......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................AGAAGCTATAGCCAT.................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................AAGAAGATATAGCTATGT.................................................................................. 18 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTTTTTTTTTTGGTTTAGGGTTTAAATGGTTTGTGGCTAAGCGTAATTGTAGTTTCGCCCTGAGAAGCTATCGTTCTGATTTGGATTCTAGATTATTGGGAAAAGTGTTAGGTTGGTTTTTGGGGGGATAGGGTGAATTGCCCAACCTAGTTCTTCTATATCGGTACAATTGTGGGGAAAGGTAGTAAGAACAGTGTGTCACTCTTTCGTTTTCCTGCTATACGTCCAGTTACAGCGACCAGACGCGTCT
**************************************************.......(((((((((((.(((.....))).))))).)))))).............................******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
........TTTGGTTTAGGGTTTAAA................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0
.............................................................................................TATTGGGAAAAGTGTTAGGTT........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................TGGGAAAAGTGTTAGGTTGGT..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................GAGTTCTTCTATATCGGTA.................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0
...............TAGGGTTTAAATGGATT.......................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................TTTTTGGGGAGATGGGGTG................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................CACAGTTGTGGGCAAAGGTA.................................................................. 20 3 4 0.25 1 0 0 0 0 0 1 0 0
....................................................................................................................TTTTTGGGGGTGTAGAGTGA.................................................................................................................. 20 3 11 0.18 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................ATAATTGTGGGAAAAGTTAGT................................................................ 21 3 6 0.17 1 0 0 0 0 1 0 0 0
.............................................................................................................................................CGAACTTAGTTCTTCTATGT......................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................AAAATTGTGGGAAAAGTTAGT................................................................ 21 3 7 0.14 1 0 0 0 0 1 0 0 0
...........GGGTTAGAGTTTAAATGGGT........................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0
..............TTAGGGCTTAAATGG............................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................GCTGCTATAAGTCCAGGTACA................ 21 3 10 0.10 1 0 0 1 0 0 0 0 0
....TTTTTTTGGGTCAGGGTTTGA................................................................................................................................................................................................................................. 21 3 12 0.08 1 1 0 0 0 0 0 0 0
.................................................................................TGGCTTCTCGATTAGTGGG...................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 1
.............................................................................................................................GGAAAGGGTGAATTG.............................................................................................................. 15 1 19 0.05 1 0 0 0 0 1 0 0 0
.............TTTAGGGTTAAAATGGG............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0
TTTTTTTTCTTGGTTGCGGGT..................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................TTTCTGGGGAGATGGGGTG................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 07:16 AM