ID:

dsi_29099

Coordinate:

3l:11532267-11532469 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-10.5	-10.1	-9.9

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

GCCTTCAGGACGACATCGATCGTTTCTGCTTGGTTTTCACCGAGCAGAACGTAAAACAAACAAGTTCCCTCTGCGAATTCGAGTTCAATGGCAGTTTATATTGCTTTTTGAAGTTCTGATAGATTTGCATTATGTAATTTTATTTAATTTTTTATGCAATGTTTAATATTTTTTGTATCAATATCCGTGTGCGTTAAGCAATAGAAGCTTTTCGACTCATTTTCCTATGAGAAATTGTTGATTTTAAGCACAGCCAATGCCAATCAGTCCATCGACATGTCACGCCTTTGGCTGCTTTGATAT ***************************************************************************************************(((.....((((((..((((((.(((((...))))).)))))).))))))....))).................................**************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	O001 Testis	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.....................................................................................................TGCTTTTTGAAGTTCTGATAGATT..................................................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0	0
..............................................................................TCGAGTTCAATGGCAGTTTATATTGCT......................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................TGTATCAATATCCGTGTG................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................ATTGCTTTTTGAAGTTCTGATAGATT..................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................AGTTTATATTGCTTTTTGAAGTTCTGA........................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCCATCGACATGTCACGCCCTTGGC...........	25	1	3	0.33	1	1	0	0	0	0	0	0
..............................................................................................................AAGTGCTGATAGATTTG................................................................................................................................................................................	17	1	8	0.25	2	0	2	0	0	0	0	0
..............................................................................................................AAGTGCTGATAGATTTCC...............................................................................................................................................................................	18	2	9	0.22	2	0	0	0	2	0	0	0
..................................................................................................................................................................................................................................ATGAGAAATTGATGATTT...........................................................	18	1	6	0.17	1	0	0	0	1	0	0	0
.............................................................................................................GAAGTGCTGATAGATT..................................................................................................................................................................................	16	1	9	0.11	1	0	0	0	0	0	1	0
...............TCGATCCTTTCTGCTCTGT.............................................................................................................................................................................................................................................................................	19	3	20	0.10	2	2	0	0	0	0	0	0
..................................................................................................................GCTGATAGATTTGCA..............................................................................................................................................................................	15	1	20	0.10	2	0	2	0	0	0	0	0
.............................................................................................................AAAGTTCTGATAGATT..................................................................................................................................................................................	16	1	10	0.10	1	0	0	0	0	1	0	0
................................................................................................................GTGCTGATAGATTTG................................................................................................................................................................................	15	1	20	0.10	2	0	2	0	0	0	0	0
..................................................................................................................GCTGATAGATTTGCAT.............................................................................................................................................................................	16	1	11	0.09	1	0	1	0	0	0	0	0
.........................................................................................................................................................................TTTTTGCATCAAAATCCG....................................................................................................................	18	2	11	0.09	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TTAGTCCCTCGACATGTGA.....................	19	3	12	0.08	1	1	0	0	0	0	0	0
........GATGACATCGATCGTTC......................................................................................................................................................................................................................................................................................	17	2	18	0.06	1	1	0	0	0	0	0	0
...........................................................AAAAGTTCCCTCTCCGA...................................................................................................................................................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1
................................................................................................................GTGCTGATAGATTTGCG..............................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0
.............................................................................................................AAAGTTCTGATAGAT...................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

CGGAAGTCCTGCTGTAGCTAGCAAAGACGAACCAAAAGTGGCTCGTCTTGCATTTTGTTTGTTCAAGGGAGACGCTTAAGCTCAAGTTACCGTCAAATATAACGAAAAACTTCAAGACTATCTAAACGTAATACATTAAAATAAATTAAAAAATACGTTACAAATTATAAAAAACATAGTTATAGGCACACGCAATTCGTTATCTTCGAAAAGCTGAGTAAAAGGATACTCTTTAACAACTAAAATTCGTGTCGGTTACGGTTAGTCAGGTAGCTGTACAGTGCGGAAACCGACGAAACTATA **************************************************************************************************************(((.....((((((..((((((.(((((...))))).)))))).))))))....))).................................***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries
...............................................................CAAGGGAGACGCTTAAGCTCA...........................................................................................................................................................................................................................	21	0	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GAAAAGCTGAGTAAAAGGAT............................................................................	20	0	3	0.67	2	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TAGCTGTACAGTGCGGAAACCGA..........	23	0	3	0.67	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................TCAAGACTATCTAAACGTAA............................................................................................................................................................................	20	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0
..............................................................TCAAGGGAGGCGCTTGAGCT.............................................................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................AAAACTTCAAGACTATCTAAA.................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................TCGGTTACGGTTAGTCAGGTAG..............................	22	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAACTAAAATTCGTGTCGGTTA.............................................	22	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATTCGTGTCGGTTACGGTTAGTC....................................	23	0	3	0.33	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................AAGGATACTCTTTAACAACTA.............................................................	21	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CGGTTAGTCAGGTAGCTGTACA.......................	22	0	3	0.33	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................TTAGTCAGGTAGCTGTACAG......................	20	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGTTAGTCAGGTAGCTGTAC........................	20	0	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................TCGGTTACGGTTAGTCAGGTAGCTGTAC........................	28	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGTTACGGTTAGTCAGGTAGC.............................	21	0	3	0.33	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTTCGGTTACGGTTAGTCAGGT................................	22	1	3	0.33	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCGGAAACCGACGAAG.....	16	1	16	0.06	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................ATGAGTGATCTTCGAAAAG..........................................................................................	19	3	16	0.06	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................GGTTAGGCAGGTGGCTG...........................	17	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................TTGTTTGTTCACGGAAG........................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:29 AM