ID:

dsi_29098

 Coordinate:

3l:22681561-22681710 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.7 -5.1 -5.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
PROTOPDNAP-
AT_richLow_complexityLow_complexity+
mature
  1. 2l:23462539-23462563 -
  2. 2l:23486480-23486504 +
  3. 3l:22631339-22631363 +
  4. dsi_29098  3l:22681612-22681636 +
  5. 3l:22746864-22746888 +
star
  1. 3l:22631368-22631395 +
  2. dsi_29098  3l:22681641-22681668 +
  3. 3l:22746893-22746920 +

Sense Strand Reads

CCTCATTTCAATGGTTATAGGGTACAGGAAAAATATTATATGTTCAACCACTGAAATAAGGAATACACCGTGCACTACTTTACAAGCAAAGACATTCGAATATCAAGATGCGTAACGGCCATACATTGCTTTTGTACTATGCAGCCACTTTTTAACATACATTTTAAAAAACATATTTCATAAAAATACTTTTTTTTTAGTTATTAAATAACTACTAAATTACTGACTCGTTCAGTAATTCCTCTGAACT
*****************************************************************************************************...............(((((((...(((....))).))))..)))............******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.....................................................................................................ATCAAGATGCGTAACGGCCATACAT............................................................................................................................ 25 0 5 6.40 32 32 0 0 0 0 0 0 0
............................................................................................................TGCGTAACGGCCATACATT........................................................................................................................... 19 0 20 1.60 32 32 0 0 0 0 0 0 0
...........................................................................................................ATGCGTAACGGCCATACA............................................................................................................................. 18 0 20 1.60 32 32 0 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAACGGCCATACAT............................................................................................................................ 26 0 5 1.40 7 2 0 0 2 0 2 1 0
....................................................................................................TATCAAGATGCGTAACGGCCAT................................................................................................................................ 22 0 6 1.17 7 0 0 4 2 0 1 0 0
....................................................................................................................................................................................................................TACTAAATTACTGACTCGTTCA................ 22 0 3 1.00 3 0 3 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATACATT........................................................................................................................... 26 0 5 1.00 5 5 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATACA............................................................................................................................. 24 0 5 1.00 5 5 0 0 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTAACGGCCA................................................................................................................................. 24 0 6 0.83 5 1 1 0 0 2 0 0 1
....................................................................................................TATCAAGATGCGTAACGGCCATAC.............................................................................................................................. 24 0 5 0.80 4 0 1 3 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTAACGGCCAT................................................................................................................................ 25 0 5 0.80 4 3 0 0 0 1 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCC.................................................................................................................................. 19 0 7 0.71 5 5 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGC................................................................................................................................... 18 0 7 0.71 5 0 0 5 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTAACGGCCATA............................................................................................................................... 26 0 5 0.60 3 1 0 0 0 2 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATACATTG.......................................................................................................................... 27 0 5 0.60 3 3 0 0 0 0 0 0 0
........................................................................................................AAGATGCGTAACGGCCATACA............................................................................................................................. 21 0 20 0.55 11 11 0 0 0 0 0 0 0
.........................................................................................................AGATGCGTAACGGCCA................................................................................................................................. 16 0 20 0.40 8 8 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAACTACTAAATTACTGACTCGTTCA................ 26 0 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGACTCGTTCAGTAATTCCTCTGAACT 27 0 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCAT................................................................................................................................ 21 0 6 0.33 2 2 0 0 0 0 0 0 0
...........TGGTTATAGGGTACAGGAAAAATA....................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATA............................................................................................................................... 22 0 6 0.33 2 2 0 0 0 0 0 0 0
..................................................................................................................................TTTGTACTATGCAGCCACTTTTTAACAT............................................................................................ 28 0 3 0.33 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TAACTACTAAATTACTGACTCGTT.................. 24 0 3 0.33 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AATAACTACTAAATTACTGACTCGTT.................. 26 0 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACCGCCATACATT........................................................................................................................... 26 1 6 0.33 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................TAAAAATACTTTTTTTTTAGTTATT............................................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0
....................................................................................................................................................TTTCTCACATGCATTTTAAAAA................................................................................ 22 3 3 0.33 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TAGTTATTAAATAACTACTAAAAA............................. 24 2 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................CATTTTAAAAAACATATTTCATAAAAA................................................................ 27 0 3 0.33 1 0 1 0 0 0 0 0 0
............................................................................................................TGCGTAACGGCCATAC.............................................................................................................................. 16 0 20 0.30 6 6 0 0 0 0 0 0 0
.........................................................................................................AGATGCGTAACGGCCATAC.............................................................................................................................. 19 0 20 0.25 5 5 0 0 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTAACGGACATACAT............................................................................................................................ 29 1 4 0.25 1 0 0 0 0 0 1 0 0
.....................................................................................................ATCAAGATGCGTAAC...................................................................................................................................... 15 0 10 0.20 2 2 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATAC.............................................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAACGGCCATACA............................................................................................................................. 25 0 5 0.20 1 1 0 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAACGGACATACA............................................................................................................................. 25 1 5 0.20 1 0 0 0 0 0 0 1 0
.....................................................................................................ATCAAGATGCGTAACG..................................................................................................................................... 16 0 10 0.20 2 2 0 0 0 0 0 0 0
........................................................................................................AAGATGCGTAACGGCC.................................................................................................................................. 16 0 20 0.20 4 4 0 0 0 0 0 0 0
.....................................................................................................ATCAAGAGGCGTAACGGCCATACATT........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................................................................GTCAAGATGCGTAACGGCCATACATT........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAACGGCCATA............................................................................................................................... 23 0 6 0.17 1 0 1 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACAGCCATACAT............................................................................................................................ 25 1 6 0.17 1 1 0 0 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTAACGGACAT................................................................................................................................ 25 1 6 0.17 1 0 0 0 0 0 0 1 0
.................................................................................................GAATATCAAGATGCGTAACGGCCAA................................................................................................................................ 25 1 6 0.17 1 0 0 0 0 0 0 0 1
.....................................................................................................ATCAAGATGCGTAACGGCCA................................................................................................................................. 20 0 7 0.14 1 1 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACTGCCATACAT............................................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGGCCATACT............................................................................................................................. 24 1 7 0.14 1 1 0 0 0 0 0 0 0
....................................TATACGGTCAACCACTGTA................................................................................................................................................................................................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0
.................................................................................................GAATATCAAGATGCGTACCGGCCA................................................................................................................................. 24 1 7 0.14 1 0 0 0 0 0 0 0 1
....................................................................................................TATCAAGATGCGTAACGTCCATACAT............................................................................................................................ 26 1 7 0.14 1 0 0 0 1 0 0 0 0
.....................................................................................................ATCAAGATGCGTAACGG.................................................................................................................................... 17 0 8 0.13 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................TTTTAACCTAGATTTTAAAAAAA.............................................................................. 23 3 8 0.13 1 0 1 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAACGG.................................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0 0
...................................................................................................GAATCAAGATGCGTAACGGCCAT................................................................................................................................ 23 2 8 0.13 1 1 0 0 0 0 0 0 0
....................................................................................................TATCAAGATGCGTAAC...................................................................................................................................... 16 0 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CAGTAATTCCTCTGAA.. 16 0 20 0.10 2 0 0 0 0 0 0 2 0
.........................................................................................................AGATGCGTAACGGCCATACATAACTC....................................................................................................................... 26 3 12 0.08 1 1 0 0 0 0 0 0 0
.........................................................................................................AGATGCGTAACGGCCATACATTGTGGTT..................................................................................................................... 28 3 14 0.07 1 0 0 0 0 1 0 0 0
......................................................................................................TAACAATGCGTAACGGCCATACA............................................................................................................................. 23 3 19 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TACTTTTTTTTTTTTCATTAAATA........................................ 24 3 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................CAAGATGCGTAACGGC................................................................................................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................TGCGTAACGGCCATACATTGTGGTT..................................................................................................................... 25 3 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................AGTAATTCCTCTGAACT 17 0 20 0.05 1 0 0 0 0 0 0 1 0
.......................................................................................................CAAGATGCGTAACGGCCATACA............................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTTTAGCTATTAAA.......................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGAGTAAAGTTACCAATATCCCATGTCCTTTTTATAATATACAAGTTGGTGACTTTATTCCTTATGTGGCACGTGATGAAATGTTCGTTTCTGTAAGCTTATAGTTCTACGCATTGCCGGTATGTAACGAAAACATGATACGTCGGTGAAAAATTGTATGTAAAATTTTTTGTATAAAGTATTTTTATGAAAAAAAAATCAATAATTTATTGATGATTTAATGACTGAGCAAGTCATTAAGGAGACTTGA
********************************************************************************************...............(((((((...(((....))).))))..)))............***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 GSM343915
embryo
 O001
Testis
 SRR902009
testis
............................................................................................GCAAGCTTATAGTTC............................................................................................................................................... 15 1 10 3.40 34 34 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAACATGATACGTCGGTGAAGAATTGT............................................................................................. 27 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................ATGTGGCAGGTGATCAAATGTT..................................................................................................................................................................... 22 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................TGTGGCAGGTGATCAAATGTTCGT.................................................................................................................................................................. 24 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................CTACAAGATGGTGACTTGAT................................................................................................................................................................................................ 20 3 9 0.44 4 0 0 0 0 0 1 0 0 3 0 0 0 0
..................................................................................................................................................................................................................TGATGATTTAATGACTGAGCAAGT................ 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TTATTCCTTATGTGGCAGGTGATCAA.......................................................................................................................................................................... 26 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................ATTCCTTATGTGGCAGGTGATCAAAT........................................................................................................................................................................ 26 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CCGTTTCTGTAAGCTTATAGTTCTAC............................................................................................................................................ 26 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TATTCCTTATGTGGCAGGTGATCAAAT........................................................................................................................................................................ 27 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TCCTTATGTGGCACGTGATGAAATGT...................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................CTACAAGATGGTGACTTGATT............................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................ATAATATACAAGTTGGTGACTTTAT................................................................................................................................................................................................ 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................CGTTTCTGTAAGCTTATAGTTCTACG........................................................................................................................................... 26 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................CTGTAAGCTTATAGTGC............................................................................................................................................... 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................ATTCCTTATGTGGCACGTGATGAAAT........................................................................................................................................................................ 26 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTATTGATGATTTAATGACTGAGCAAGT................ 28 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................TCCTTATGTGGCAGGTGATCAAATGT...................................................................................................................................................................... 26 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................ATTCCTCATGTGGCACGTGATGAAA......................................................................................................................................................................... 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................GCGTTTCTGTAAGCTTATAGTTCTAC............................................................................................................................................ 26 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................ACAAGTTGGTGACTTTATTCCTTATGT....................................................................................................................................................................................... 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................CAAGATGGTGACTTTATG............................................................................................................................................................................................... 18 2 8 0.25 2 0 0 0 0 0 1 0 0 1 0 0 0 0
.......................................TACAAGATGGTGACTT................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................CAAGATGGTGACTTTATGA.............................................................................................................................................................................................. 19 3 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0 0
....................................................................................................ATAGTTCTACGCATTGCCGGTATGT............................................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................TACGCATTGCCGGTATGTA............................................................................................................................ 19 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0 0
....................................................................................TCGTTTCTGTAAGCTTATTGTTC............................................................................................................................................... 23 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TGAAAAATTGTAGGTAAAAG.................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TGAAAAACTGTATGTAA....................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................CTACAAGATGGTGACTTT.................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................ATACTAGTTGGTGACTTC.................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................ACAAGATGGTGACTTGATG............................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................TTTTTTAGGTGGCACGTGAT............................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................TACAAGATGGTGACTTGATG............................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................TACAAGATGGTGACT.................................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................CAAGATGGTGACTTGATCC.............................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................GTGCAGGTCTGTAACGAAA...................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................CAAGTCATTAAGGCTAATTG. 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGGATTTTTGTGTAAAAAAAAT................................................... 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22681511-22681760 + dsi_29098 CCTCATTTCAATGGTTA-----TAGGGTACAGGAAA-AATATTATATGTT------------------------------------------CAACCACTGAAATAAGGAATACACCGTGCACTACTTTACAAGCAAAGACATTCGAATATCAAGATGCGTAACGGCCATACATTGCTTTTGTACTATGCAGCCACTTTTT---------------------------------------AACATACATTTTAAAAAACATATTTCATAAAA-ATACT------------------------TTTTT---------------------------------------------------TTTAGTTATTAAATAACTACTAAATTA-CTGACTCG--------------------------------------------TTCAGTAA-TTCCTCTGAACT-----
droSec2 scaffold_41:158885-159073 + ACTCATTTCAATGGTTA-----TAGGGTACAGGAAA-AATATTATATGTT------------------------------------------CAACCACTTAAATAAGGAATACACCGTGCACTACTTTACAAGCAAAGACATTCGAATAACAAGATGCGTAACGGCCATACATTGCTTTTGTACTATGCAGCCACTTTTT---------------------------------------AACATACATTTTAAAAAACATATTTCATAAAA-ATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:23241909-23242116 + CCTCATTCGAATCGTATTAGGGTAGGGTACAGGTTA-AATATTATATT----------------------------------------TTTTCAACTACTTAAATAAGGAATTCACCGTGCACTACTTTACAAGCAAACGCATTCGAATAACAAGATGCATAACGGCCATACATTGCTTTTGTACTATGCAGCTACTTTTG---------------------------------------AACATACATTTTAAGAAATATATTTCATTAAAAATA--------------------------------------------------------------------------------------------------CTACGAACATA-C-----------------------------------------------------------------------------
droEre2 scaffold_4929:25170480-25170710 - GGGTC-----------------------------------------------------------------------------------------------------------ATATCGTGTAT----GTCCAAACAAAGACACTAGAATAATAAGATGCGTAACGGCCATACATTGGTTTTGCACTATGCAGCCACTTTTTTGGTGGCTCTCCCCGTTCGCGTCATCATCAAATAACAAAAACATATAA---CAAAAACATTCTGCAAAATA-ATATGTATTTGCATTTCAAATACTGAAAATTGGTCATTTACATA------------------------------------------------------------------------ATACATT---------------------------------------------TACAT-GCATATTATTTTACTGG
droYak3 v2_chrUn_4614:222-357 + TATAA----------------------TACAGCAAATAATATGTGACGCT------------------------------------------CAAACTCATGAATGAGGTAGGCAAGGCAGAC-AGTCTTAAACCAAAGACATTAGAATAACAAGATGCGTAACGGCCATACATTAGTTTTGCACTATGCAGCCACTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408412:10155-10253 + AAAATAA------------------ATTGTAAAA---AACTTATAATATT--------------------------------------TTATT---------------------------------------------------------------------------AA-AATT-------------------------------------------------------------------------------------------------------------------------------GTTCT---------------------------------------------------TATAGACATTATAAAATTGTACATTTA-TACATATGTA---------------------------------------------AATAT-ATTTATTAAATT-----
droBia1 scf7180000302377:108245-108385 - TTTTTATTAAGCAATTA-----AGGTAGATTTTGAA-ACCATTGCTTAAA------------------------------------------TTATCATAAAAATAATGTTGTTTTCATCCATTTCT--------------TATAGAATAACGAATAATGTCTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTACAAAACTGCAGAAGTA-CA---------------------------------------------------------ATGAAGTGTGGACT-----
droTak1 scf7180000414567:27735-27899 + ACCGAGCGTTGCATT-------------------------------------------AAAAGGGTGAAGCGGACAC-------------------------------------------------------------CACATTTGAATACT-AATTGC--------------------------------------------ATAATTTTGACCATTCGCGTT------------------------------------------------------------------------------TTACTTATTTACATAC--------------------------------------------------------------GTTTA-TACATATGTATATATTTATGCTATC---GCTATATAGTAAATAGCTGAATATAAACCTAA-TTATTTTCGGTT-----
droEle1 scf7180000491104:925891-925894 + AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000773916:433-674 - TATAG--------------------AAGAAAGAGAA-AACATAGTAATTTCAAATAACAAAAATAAGAAGCAAACAGTTCATAAGGATA---------------------------------------------------------------------------GGTTAAAAATTTTTATTTC--------------------ATAATCACTTTAATTCTCTTA------------------------------------------------------------------------------TATATATATCACGTATGACCATACACAATAAGAACCATACACAAAAAAACCATAATTAGATTGAAAAAAAAATAAATAAAATAAATAAATTA--TATATAAATATCACTTTTGATT--------------------CAAAACAA-TACTTTCTGATT-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTCATTTCAATGGTTA-----TAGGGTACAGGAAA-AATATTATATGTT------------------------------------------CAACCACTGAAATAAGGAATACACCGTGCACTACTTTACAAGCAAAGACATTCGAATATCAAGATGCGTAACGGCCATACATTGCTTTTGTACTATGCAGCCACTTTTT---------------------------------------AACATACATTTTAAAAAACATATTTCATAAAA-ATACT------------------------TTTTT---------------------------------------------------TTTAGTTATTAAATAACTACTAAATTA-CTGACTCG--------------------------------------------TTCAGTAA-TTCCTCTGAACT-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................2556.4032000000000032000000
............................................................................................................................................................TGCGTAACGGCCATACATT.................................................................................................................................................................................................................................................................................................19201.6032000000000032000000
...........................................................................................................................................................ATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................18201.6032000000000032000000
....................................................................................................................................................TATCAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................2651.40700000022012000000
....................................................................................................................................................TATCAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................2261.17700004021000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TACTAAATTA-CTGACTCG--------------------------------------------TTCA......................2231.00300000000300000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATACATT.................................................................................................................................................................................................................................................................................................2651.00500000000005000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................2451.00500000000005000000
.................................................................................................................................................GAATATCAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................2460.83500000000101021000
....................................................................................................................................................TATCAAGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................2450.80400003000100000000
.................................................................................................................................................GAATATCAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................2550.80400000000003010000
.....................................................................................................................................................ATCAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................1970.71500000000005000000
.....................................................................................................................................................ATCAAGATGCGTAACGGC.........................................................................................................................................................................................................................................................................................................1870.71500005000000000000
.................................................................................................................................................GAATATCAAGATGCGTAACGGCCATA.....................................................................................................................................................................................................................................................................................................2650.60300000000001020000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATACATTG................................................................................................................................................................................................................................................................................................2750.60300000000003000000
........................................................................................................................................................AAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................21200.5511000000000011000000
.........................................................................................................................................................AGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................16200.40800000000008000000
...................................................................................................................................................................................................................................................................................................................................................................................TAACTACTAAATTA-CTGACTCG--------------------------------------------TTCA......................2630.33100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGACTCG--------------------------------------------TTCAGTAA-TTCCTCTGAACT-----2730.33100000010000000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................2160.33200000000002000000
...........TGGTTA-----TAGGGTACAGGAAA-AATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100000000001000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATA.....................................................................................................................................................................................................................................................................................................2260.33200000000002000000
..................................................................................................................................................................................TTTGTACTATGCAGCCACTTTTT---------------------------------------AACAT...........................................................................................................................................................................................................................2830.33100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................TAACTACTAAATTA-CTGACTCG--------------------------------------------TT........................2430.33100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................AATAACTACTAAATTA-CTGACTCG--------------------------------------------TT........................2630.33100000010000000000
...........................................................................................................................................................................................................................................................................TAAAA-ATACT------------------------TTTTT---------------------------------------------------TTTAGTTATT................................................................................................2530.33100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................TAGTTATTAAATAACTACTAAAAA................................................................................2430.33100000000100000000
......................................................................................................................................................................................................................................................CATTTTAAAAAACATATTTCATAAAA-A..............................................................................................................................................................................................2730.33100000000100000000
............................................................................................................................................................TGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................16200.30600000000006000000
.........................................................................................................................................................AGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................19200.25500000000005000000
.....................................................................................................................................................ATCAAGATGCGTAAC............................................................................................................................................................................................................................................................................................................15100.20200000000002000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................2350.20100000000001000000
....................................................................................................................................................TATCAAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................2550.20100000000001000000
.....................................................................................................................................................ATCAAGATGCGTAACG...........................................................................................................................................................................................................................................................................................................16100.20200000000002000000
........................................................................................................................................................AAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................16200.20400000000004000000
....................................................................................................................................................TATCAAGATGCGTAACGGCCATA.....................................................................................................................................................................................................................................................................................................2360.17100000000100000000
.................................................................................................................................................GAATATCAAGATGCGTAACGGCCAA......................................................................................................................................................................................................................................................................................................2560.17100000000000001000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................2070.14100000000001000000
.....................................................................................................................................................ATCAAGATGCGTAACGGCCATACT...................................................................................................................................................................................................................................................................................................2470.14100000000001000000
.....................................................................................................................................................ATCAAGATGCGTAACGG..........................................................................................................................................................................................................................................................................................................1780.13100000000001000000
....................................................................................................................................................TATCAAGATGCGTAACGG..........................................................................................................................................................................................................................................................................................................1880.13100000000001000000
....................................................................................................................................................TATCAAGATGCGTAAC............................................................................................................................................................................................................................................................................................................16100.10100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAA-TTCCTCTGAA.......16200.10200000000020000000
.......................................................................................................................................................CAAGATGCGTAACGGC.........................................................................................................................................................................................................................................................................................................16200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAA-TTCCTCTGAACT-----17200.05100000000010000000
.......................................................................................................................................................CAAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................22200.05100000000001000000
droSec2
ACTCATTTCAATGGTTA-----TAGGGTACAGGAAA-AATATTATATGTT------------------------------------------CAACCACTTAAATAAGGAATACACCGTGCACTACTTTACAAGCAAAGACATTCGAATAACAAGATGCGTAACGGCCATACATTGCTTTTGTACTATGCAGCCACTTTTT---------------------------------------AACATACATTTTAAAAAACATATTTCATAAAA-ATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................AACAAGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................23201.402802107
......................................................................................................................................................ACAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................24200.751512030
......................................................................................................................................................ACAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................20200.601200012
......................................................................................................................................................ACAAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................23200.1530120
...................................................................................................................................................ATAACAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................21200.1530003
....................................................................................................................................................TAACAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................26200.0511000
.....................................................................................................................................................AACAAGATGCGTAACGGCCATACAC..................................................................................................................................................................................................................................................................................................25200.0511000
......................................................................................................................................................ACAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................19200.0511000
dm3
CCTCATTCGAATCGTATTAGGGTAGGGTACAGGTTA-AATATTATATT----------------------------------------TTTTCAACTACTTAAATAAGGAATTCACCGTGCACTACTTTACAAGCAAACGCATTCGAATAACAAGATGCATAACGGCCATACATTGCTTTTGTACTATGCAGCTACTTTTG---------------------------------------AACATACATTTTAAGAAATATATTTCATTAAAAATA--------------------------------------------------------------------------------------------------CTACGAACATA-C-----------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................TAACAAGATGCATAACGGCCATACA...................................................................................................................................................................................................................................................................................................25511.80590010001100000000000000100000010000000000000000000000110000120000000000000000000000700100000000000000010000000010100000000000000000000000000021000120220012000000000000000000001010000000000100003000000000002010000000210000000000000000001000000000000000000000000000000000000000000000000000000000100000000210000000000000000422000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACAT..................................................................................................................................................................................................................................................................................................2657.603800000000000000000000000000000000000000000000000000000000000100000000000000000000001000200000000000000000000800000000000000000000000000000000000000001000300000000000000000000000000000000001000000000100000000010000000210000000000000000000000000000000000000000000000000000000000000000000000000001102000000110000000000000000100000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATAC....................................................................................................................................................................................................................................................................................................2454.40220000000010000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000012000000000000000000000000000000010000100000011000000000000000000000000000000000100000000100000001000000000340000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACATT.................................................................................................................................................................................................................................................................................................2752.40120000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000200000010000000001000000000100010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATA.....................................................................................................................................................................................................................................................................................................2362.33140000000000000000000000000000000000000000000001000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000001000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
................................................................................................TACTTAAATAAGGAATTCACCGTG........................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................TAACAAGATGCATAACGGCCAT......................................................................................................................................................................................................................................................................................................2262.00120000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000010000000000240000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000
..TCATTCGAATCGTATTAGGGTAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................TGTACTATGCAGCTACTTTTG---------------------------------------AACATA..........................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCC........................................................................................................................................................................................................................................................................................................2061.0060000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..TCATTCGAATCGTATTAGGGTAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................TACTATGCAGCTACTTTTG---------------------------------------AACA............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TACATTGCTTTTGTACTATGCAGCTAC............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................CACCGTGCACTACTTTACAA...........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTCGAATAACAAGATGCATAACGGCCA.......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAGGGTACAGGTTA-AATATTATATT----------------------------------------TTT.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................CAGCTACTTTTG---------------------------------------AACATACATTTTAAGA................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................TGCTTTTGTACTATGCAGCTACTTT.........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGCTTTTGTACTATGCAGCTACTTTT........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTCGAATCGTATTAGGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AATCGTATTAGGGTAGGGTACAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................TTTTGTACTATGCAGCTACTTTTG---------------------------------------AACA............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTAGGGTAGGGTACAGGTTA-AATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................TAACAAGATGCATAACGGC.........................................................................................................................................................................................................................................................................................................1990.5650000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCA.......................................................................................................................................................................................................................................................................................................2160.3320000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACAA..................................................................................................................................................................................................................................................................................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACC...................................................................................................................................................................................................................................................................................................25100.3030000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACATTG................................................................................................................................................................................................................................................................................................2850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................AAGATGCATAACGGCCATACA...................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................ACAAGATGCATAACGGCCAG......................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................AACAAGATGCATAACGGCCAT......................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................ATAACAAGATGCATAACGGCC........................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................AATAACAAGATGCATAACGGCCAT......................................................................................................................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCATACAG..................................................................................................................................................................................................................................................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AATAACAAGATGCATAACGGC.........................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................AACAAGATGCATAACGGC.........................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TAACAAGATGCATAACGGCCT.......................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................AATAACAAGATGCATAACG...........................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGGTC-----------------------------------------------------------------------------------------------------------ATATCGTGTAT----GTCCAAACAAAGACACTAGAATAATAAGATGCGTAACGGCCATACATTGGTTTTGCACTATGCAGCCACTTTTTTGGTGGCTCTCCCCGTTCGCGTCATCATCAAATAACAAAAACATATAA---CAAAAACATTCTGCAAAATA-ATATGTATTTGCATTTCAAATACTGAAAATTGGTCATTTACATA------------------------------------------------------------------------ATACATT---------------------------------------------TACAT-GCATATTATTTTACTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................TAGAATAATAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................26200.1530000003
................................................................................................................................................AGAATAATAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................24200.1022000000
................................................................................................................................................................................................................................................................................................TCAAATACTGAAAATTGGTCATTTACA.....................................................................................................................................................27190.0511000000
...............................................................................................................................................TAGAATAATAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................25200.0511000000
droYak3
TATAA----------------------TACAGCAAATAATATGTGACGCT------------------------------------------CAAACTCATGAATGAGGTAGGCAAGGCAGAC-AGTCTTAAACCAAAGACATTAGAATAACAAGATGCGTAACGGCCATACATTAGTTTTGCACTATGCAGCCACTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................262011.9023802042100070006
...........................................TGACGCT------------------------------------------CAAACTCATGAATGAGGT..................................................................................................................................................................................................................................................................................................................................................................2567.3344010000000043
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................25205.251052326800030000
.............................................................................................................TAGGCAAGGCAGAC-AGTCTTAAACC.........................................................................................................................................................................................................................................................................................................................................2514.00401300000000
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCCATA.....................................................................................................................................................................................................................................................................................................28202.65530287000300015
............................................GACGCT------------------------------------------CAAACTCATGAATGAGGT..................................................................................................................................................................................................................................................................................................................................................................2461.33801000000007
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGC.........................................................................................................................................................................................................................................................................................................24201.1022091200000010
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................27200.9519015300010000
....................................................................................................................................................TAACAAGATGCGTAACGGCCATACA...................................................................................................................................................................................................................................................................................................25200.9519019000000000
.........................................TGTGACGCT------------------------------------------CAAACTCATGAATGAGGT..................................................................................................................................................................................................................................................................................................................................................................2760.83503000000002
.........................................TGTGACGCT------------------------------------------CAAACTCATGAATGAGG...................................................................................................................................................................................................................................................................................................................................................................2660.83500100000004
....................................................................................................TGAATGAGGTAGGCAAGGCAGAC-AG..................................................................................................................................................................................................................................................................................................................................................2540.75302010000000
................................................................................................................................................AGAATAACAAGATGCGTAACGGCCA.......................................................................................................................................................................................................................................................................................................25200.7014014000000000
..TAA----------------------TACAGCAAATAATATGTGACGCT------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................2630.67201100000000
......................................................................................................AATGAGGTAGGCAAGGCAGAC-AGTCT...............................................................................................................................................................................................................................................................................................................................................2640.50201100000000
............................................................................................CAAACTCATGAATGAGGTAGGCAAGGCA........................................................................................................................................................................................................................................................................................................................................................2840.50202000000000
..............................................................................................AACTCATGAATGAGGTAGGCAAGGC.........................................................................................................................................................................................................................................................................................................................................................2540.50201100000000
..............................................................................................AACTCATGAATGAGGTAGGCAAGGCA........................................................................................................................................................................................................................................................................................................................................................2640.50201100000000
...........................TACAGCAAATAATATGTGACGCT------------------------------------------CAAAC...............................................................................................................................................................................................................................................................................................................................................................................2840.50200200000000
..............................................................................................................................................................................TAGTTTTGCACTATGCAGCCACTTT.........................................................................................................................................................................................................................................................................2520.50101000000000
.......................................TATGTGACGCT------------------------------------------CAAACTCATGAATGAGG...................................................................................................................................................................................................................................................................................................................................................................2860.50303000000000
....................................................................................................................................................TAACAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................26200.35705000020000
.ATAA----------------------TACAGCAAATAATATGTGACGCT------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................2730.33101000000000
..........................................GTGACGCT------------------------------------------CAAACTCATGAATGAGGT..................................................................................................................................................................................................................................................................................................................................................................2660.33201000000001
TATAA----------------------TACAGCAAATAATATGTGACG................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100010000000
.................................................................................................TCATGAATGAGGTAGGCAAGGCAGAC-....................................................................................................................................................................................................................................................................................................................................................2640.25101000000000
........................................................................................................TGAGGTAGGCAAGGCAGAC-AGTCTT..............................................................................................................................................................................................................................................................................................................................................2540.25100100000000
.....................................................................................................GAATGAGGTAGGCAAGGCAGAC-AGT.................................................................................................................................................................................................................................................................................................................................................2540.25100000010000
............................................................................................CAAACTCATGAATGAGGTAGGCAAGGC.........................................................................................................................................................................................................................................................................................................................................................2740.25101000000000
....................................................................................................................................................TAACAAGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................24200.25505000000000
.................................................................................................TCATGAATGAGGTAGGCAAGGCAGAC-A...................................................................................................................................................................................................................................................................................................................................................2740.25100100000000
........................................................................................................TGAGGTAGGCAAGGCAGAC-....................................................................................................................................................................................................................................................................................................................................................1940.25101000000000
.............................................................................................AAACTCATGAATGAGGTAGGCAAGGCA........................................................................................................................................................................................................................................................................................................................................................2740.25100100000000
............................................................................................CAAACTCATGAATGAGGTAGGCAAGG..........................................................................................................................................................................................................................................................................................................................................................2640.25100100000000
....................................................................................................TGAATGAGGTAGGCAAGGCAGAC-AGT.................................................................................................................................................................................................................................................................................................................................................2640.25100100000000
....................................................................................................................................................TAACAAGATGCGTAACGGCCATACATT.................................................................................................................................................................................................................................................................................................27200.25504000010000
....................................TAATATGTGACGCT------------------------------------------CAAACTCATGA.........................................................................................................................................................................................................................................................................................................................................................................2560.17101000000000
....................................TAATATGTGACGCT------------------------------------------CAAACTCAT...........................................................................................................................................................................................................................................................................................................................................................................2360.17101000000000
....................................TAATATGTGACGCT------------------------------------------CAAACTC.............................................................................................................................................................................................................................................................................................................................................................................2160.17101000000000
....................................TAATATGTGACGCT------------------------------------------CAAACTCATG..........................................................................................................................................................................................................................................................................................................................................................................2460.17101000000000
...........................................TGACGCT------------------------------------------CAAACTCATGAATGAGG...................................................................................................................................................................................................................................................................................................................................................................2460.17101000000000
...........................................TGACGCT------------------------------------------CAAACTCATGAATGAGGC..................................................................................................................................................................................................................................................................................................................................................................2560.17100010000000
................................................................................................................................................AGAATAACAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................26200.15303000000000
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCCAC......................................................................................................................................................................................................................................................................................................27200.10200200000000
.....................................................................................................................................................AACAAGATGCGTAACGGCCATACATT.................................................................................................................................................................................................................................................................................................26200.10202000000000
.....................................................................................................................................................AACAAGATGCGTAACGGCCATACAT..................................................................................................................................................................................................................................................................................................25200.10202000000000
..............................................................................................................................................TTAGAATAACAAGATGCGTAACGGCCAC......................................................................................................................................................................................................................................................................................................28200.05100100000000
.................................................................................................................................................GAATAACAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................23200.05100100000000
.....................................................................................................................................................AACAAGATGCGTAACGGCCATAC....................................................................................................................................................................................................................................................................................................23200.05101000000000
................................................................................................................................................AGAATAACAAGATGCGTAACGGC.........................................................................................................................................................................................................................................................................................................23200.05101000000000
.................................................................................................................................................GAATAACAAGATGCGTAACGGC.........................................................................................................................................................................................................................................................................................................22200.05100000010000
..............................................................................................................................................TTAGAATAACAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................26200.05100100000000
........................................................................................................................................................AAGATGCGTAACGGCCATA.....................................................................................................................................................................................................................................................................................................19200.05100000010000
................................................................................................................................................AGAATAACAAGATGCGTAACGGCC........................................................................................................................................................................................................................................................................................................24200.05101000000000
.................................................................................................................................................GAATAACAAGATGCGTAACGGCCAT......................................................................................................................................................................................................................................................................................................25200.05100100000000
...............................................................................................................................................TAGAATAACAAGATGCGTAACT...........................................................................................................................................................................................................................................................................................................22200.05101000000000
...............................................................................................................................................TAGAATAACAAGATGCGTAACGGCCATT.....................................................................................................................................................................................................................................................................................................28200.05100100000000
droEug1
AAAATAA------------------ATTGTAAAA---AACTTATAATATT--------------------------------------TTATT---------------------------------------------------------------------------AA-AATT-------------------------------------------------------------------------------------------------------------------------------GTTCT---------------------------------------------------TATAGACATTATAAAATTGTACATTTA-TACATATGTA---------------------------------------------AATAT-ATTTATTAAATT-----SizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTATTAAGCAATTA-----AGGTAGATTTTGAA-ACCATTGCTTAAA------------------------------------------TTATCATAAAAATAATGTTGTTTTCATCCATTTCT--------------TATAGAATAACGAATAATGTCTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTACAAAACTGCAGAAGTA-CA---------------------------------------------------------ATGAAGTGTGGACT-----SizeHit CountTotal NormTotal
No Reads
droTak1
ACCGAGCGTTGCATT-------------------------------------------AAAAGGGTGAAGCGGACAC-------------------------------------------------------------CACATTTGAATACT-AATTGC--------------------------------------------ATAATTTTGACCATTCGCGTT------------------------------------------------------------------------------TTACTTATTTACATAC--------------------------------------------------------------GTTTA-TACATATGTATATATTTATGCTATC---GCTATATAGTAAATAGCTGAATATAAACCTAA-TTATTTTCGGTT-----SizeHit CountTotal NormTotal
No Reads
droEle1
AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TATAG--------------------AAGAAAGAGAA-AACATAGTAATTTCAAATAACAAAAATAAGAAGCAAACAGTTCATAAGGATA---------------------------------------------------------------------------GGTTAAAAATTTTTATTTC--------------------ATAATCACTTTAATTCTCTTA------------------------------------------------------------------------------TATATATATCACGTATGACCATACACAATAAGAACCATACACAAAAAAACCATAATTAGATTGAAAAAAAAATAAATAAAATAAATAAATTA--TATATAAATATCACTTTTGATT--------------------CAAAACAA-TACTTTCTGATT-----SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 07:46 PM