ID:

dsi_29096

 Coordinate:

3r:19326034-19326195 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.5 -33.3 -33.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 3l:11935893-11935908 -
  2. dsi_29096  3r:19326059-19326074 +
star

Sense Strand Reads

CCGTCCGCAGAGCGCACCATCGTCTTCAGCGGAGCACACACAGCAGCTAGGTGTGCTCTTCCGTACGTAACGGTTGCGGATTTTCACTGGATTTCCATTTCCACACAGCCAGCACACAGGAAAATTCTCACACACTCGCAGCAGAAAAGTGCATAAAACGCGTGGAAAACTCGGGGGAAATCACGCTGAAAACTCGCGAAAAACTCGCTTTAACTCGATTGCTGTGCGTGTGAAAATTTTCCATCCGGTGAAGGAAAAAAAG
**************************************************..........((((.....))))((((((.((((((.(((((((((.(((((((...((.((......(((....)))......)).)).(((......))).........))))))).......))))))).)).)))))).)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O002
Head
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............ACCATCGTCTTCAGCGGAGC................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...........GCGCACCATCGTCTTCAGC........................................................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACTCGATTGCTCTGCGTGCGGAA........................... 24 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0
.............................CGGAGCACACACAGCAGC....................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................CCATCGTCTTCAGCGGAGCACA................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................GCTACGTGTGCTCTTACGTACG................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................AAAGCTCGCTTGATCTCGATT.......................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................AACTCGATTGCTCTGCGTGCGGA............................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................GCACACACAGCAGCTAGGT.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................CTAGGTGTGCTCTTCCGTACGTAACGGTT........................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................GCGGATTTTCACTGGA........................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................TTCCATCCGGTGAAGGA....... 17 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................ACTCGGGAGAAGTTACGCTG.......................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TCCGGTGAACGAGAAAAA. 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................TTTCCCGTCCAGTGAAGGA....... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................AAACTCGCTTGATCTTGATT.......................................... 20 3 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................CGGTGAAGAAAAAAAA. 16 1 18 0.06 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................CTGAAAACGCGGGAAAAA........................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
....................................................GTGCACTTCCGTAGGT.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............AACGTCGTCTTCAGCGG...................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................CTGCAAACTCGCGAGA............................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GGCAGGCGTCTCGCGTGGTAGCAGAAGTCGCCTCGTGTGTGTCGTCGATCCACACGAGAAGGCATGCATTGCCAACGCCTAAAAGTGACCTAAAGGTAAAGGTGTGTCGGTCGTGTGTCCTTTTAAGAGTGTGTGAGCGTCGTCTTTTCACGTATTTTGCGCACCTTTTGAGCCCCCTTTAGTGCGACTTTTGAGCGCTTTTTGAGCGAAATTGAGCTAACGACACGCACACTTTTAAAAGGTAGGCCACTTCCTTTTTTTC
**************************************************..........((((.....))))((((((.((((((.(((((((((.(((((((...((.((......(((....)))......)).)).(((......))).........))))))).......))))))).)).)))))).)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................CGTCGATCCACGCAAGAAG......................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0
..........................................CGTCGATCGACGCAAGAAG......................................................................................................................................................................................................... 19 3 20 1.10 22 22 0 0 0 0
..........................................................................................................................................................................................................................................TTAAAAGATAGGCCACTTGCTCT..... 23 3 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................................................TTTAAAAGATAGGCCACTTGCTCT..... 24 3 1 1.00 1 0 1 0 0 0
................................TCGTGTGTGTCGTCG....................................................................................................................................................................................................................... 15 0 4 0.25 1 0 0 1 0 0
.........................................GCGTCGATCCACGCAAGAAG......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0
..........................................................................................TTAATGTAAAGGTTTGTCGGT....................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0
......................................................................................GCCCTAAAGGAAAAGGTG.............................................................................................................................................................. 18 2 15 0.07 1 0 0 1 0 0
.......................................................GAGAAGGCCTGGATTG............................................................................................................................................................................................... 16 2 19 0.05 1 1 0 0 0 0
................................AGGTGTGTGTCGTCTATCC................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
........................................................AGAAGGCATGTATCG............................................................................................................................................................................................... 15 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................................................AACTTTTAAAAGGTAG................. 16 1 20 0.05 1 0 0 1 0 0
......CGACTCGCGTGGAAGCAT.............................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19325984-19326245 + dsi_29096 CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CAG-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAG
droSec2 scaffold_0:20130490-20130751 + CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CAG-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAG
dm3 chr3R:19788884-19789145 + CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTTCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CGA-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CGCGATGAAAACTT--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAA
droEre2 scaffold_4820:8268460-8268719 - CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CGG-------------------------------------AAAAGTGCACAAACGGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------GCTCGA---TTCAAC------------------------T---CC------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------GA---AAAAG
droYak3 3R:26713363-26713625 - CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--TAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAA----TC--G-----------------CAG--------CGG-------------------------------------AAAAGTGCACAAACGGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGA---TTCAGC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------GAAAAAAAAG
droEug1 scf7180000409798:605615-605877 - CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACATC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--TAGC-----C----------AG-C-ACACAGGAAAATTCCCACACAC----TC--GCA---------------CAG--------CGA----------------A--------------------AAAAGTGCACAAAACTCGT---GGAAAACTCGGGGGAAAA--------------------------------T-C--GGTGAAAACTT--G---------CGAAAA-----------A-A-------CACTCGG---TT-AAT------------------------T---CC---CTG----ATT-----GTGCGTTTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAG
droBia1 scf7180000302136:125908-126234 + CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATCCCCAATTTCCACA--CAGCTAGCAC----------AG-C-ACACAGGAAAATTCTCACACAC----CC--G-----------------CAG---GCCG-CGG--------------------------------------AAAGTGCACAAAACTCGT---GGAAAACTCG----------------------------------------------CTGAAAATCC--G---------TAAAAAGCTCGTCGCAAACCCACTTCGAACTCGG---TT----GAAG-GTGGA---------AAAACT--------CTC----ATT-----GTGCGCTTGAAAA-TTTTCCATCCGGG-T-------------GGT--AACGGTTT-CCCTCCCCCCGCCC---CCCC----------------------------GCT-G---------------------------------AAGTGCGT------------GG-AAAAGAG
droTak1 scf7180000415183:48768-49051 - CCGTCCG-------CAGAGCGCACCATCGTTTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCATTTTC--ACTACTG---------------GATCCCCA-TTTCCACACACAGC-----C----------AGCC-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG---GCCA-CAA-------------------------------------AAAAGTGCACAAAATTCGT---AGAAAAACCGTGGAAAG---------------------------------T-C-CGTGGGAAACCC--T---------TGAAAA-----------A----------ACTCGG---TTAA-A-----TCGCA---------AAAACT--------CTG----ATT-----GTGCG-TTGAAAA-TTTTCCATCCGGGAGACG---------------------------------------------------------------------------------------------------------------------------------GCG----AAAAG
droEle1 scf7180000491008:85326-85583 + CCGTCCG-------CAGAGCG--CCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTTCAT----AGC----CC----------AG-C-ACACAGGAAAATTCTCACACAC----CC--G-----------------CAGCAGGCGG-CGA----------------AAGTGTGC-----------AAGAAAGTGCACAAAAGTCGG---GAAAAACC----------------------------------------------CGTTGAAAGCTC--G---------CGTAAA----------------------ACTCGG---TTAAGC------------------------C--------CTC----CTT-----GTGCG-GTGAAAA-TTTTCCATCCGGA-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAG
droRho1 scf7180000779169:114327-114583 - CCGTCCG-------CAGAGCG--CCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTA---------------GATTTCCA-ATTCCAC----AGC----CC----------AG-C-ACACAGGAAAATTTTCACACAT----AC--G-----------------CAGCAGGCGG-CGA----------------AAGTGTGC-----------AAGAAAGTGCACAAAA-----------------------AA---------------------------------A-CACGTTAAAAGCTC--GCGAAACTCGCG---A----------------------ACTCGG---TTAAAC------------------------T--------CTC----CTT-----GTGCG-GTGAATAATTTTCCATCCGGA-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAG
droFic1 scf7180000453800:1963215-1963482 + CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTTCA-TTTTCAT----AGC-----T----------AG-C-ACACAGGAAAATTC--ACACAC----TCAAAC-------GCACAAACGCAGCAGGCGG-CG------------------AGTGTGC-----------AAGAAAGTGCACGAAAACCGT---GAAAAACTCGGG----------------------------------------------GAAAACTC--G---------CGAAAA----------------------ACTCGG---TTAA-A------------------------T---AG---CTA----CTT-----GTGCG-GTGAAAA-TTTTCCATCCGGA-GAAG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAG
droKik1 scf7180000302778:178665-178922 + CTGGCGT-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GACTTTCA-CAACCAC----AGG-----C----------AG-C---ACAGGAAAATTTTCACACACAC--TG--G-----------------CAGCA-GCGG-CGC----------------AAGAAAGC-----------AA----------------------G-AAAACTGCCTGA-AA---------------------------------A-CTCGCCAAA-ACTCTGG---------CGAAA----------------------CGTT--C---ATTAAT------------------------T---CGCAGCCCC-TTGCTGCAAAGTGC-TGTGGAAA-CTTTCC------T-AAAA-----------------------------------------------------------------------------------------------------------------------------------AA-AAGAAAA
droAna3 scaffold_13340:7770216-7770530 - ------G-------CAGAGCGCCCCATCAACTCAAGCGGAGCACAAGCA-CACACAGCAGCTAGCAGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTACAA----TTA----CGGGACAC--------------------TGCCA-TTTTCACA----GG----CCACCATATCCAAG----CACAGGAAAATTTTCACACAC----AC--ACACACCTAACACACT-------------C-----------------GGTGTGTGC---------------------------GGTG-------ATATTCGAGCGGTG---------------------------------T---------------------------------------------------------TCGG---TT----GAAAA--GGAAAAA-CTGAAAAACTTTAAG------AAAACTT-----GTGCG-GTGAAAA-TTTTCCATCTGCA-AATG----------------------T-CCCTCCTCCTCCTCCCACCCA----------------------------GCTCGAAAAGCGAGTG-AACC---------------------------------GAGTG----AAAAG
droBip1 scf7180000396708:1079192-1079506 + ------G-------CAGAGCGCCCCATCAACTCAAGCGGAGCACAAGCA-CACACAGCAGCTAGCAGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTACAA----TTA----CGGGACAC--------------------TGCCA-TTTTCACA----GG----GCACTACATCCAAG----CACAGGAAAATTTTCACACAC----AC--A----CCAAGCACACTCGCAG--------CGA--------------------------------------AAGGTGTGCA--CGGTG--------TATTCGGTGT----------------------------------------------------------------------------------------------TCGG---TT----AAAAAATGGAAAAACCTGAAAAACTTTAAG------A-AACTT-----GTGCG-GTGAAAA-TTTTCCATCTGCA-AATG----------------------T-CCCACCTCCTCC-----CCCA----------------------------GCTCGAAAAGCGAGTG-AACC------------------------------ACCGAGTG----AAAAG
droWil2 scf2_1100000004902:1103498-1103819 - TCATT---------CAGAGCGCACCATCGTCTTCACCCAAGCACAAGCACCACACAGC--CAGTCAGCTAGGTGT--GCTCTTCCGTACGTTACGGGTTACGGG---GCA-----------CTGGCACACACA-------------------------CACC-----A----------AGAGAAAGAAGAAAAATTTTCACATACAC--TC--A-----------------CAA--AGCCAATCAAAAAGAATATAAAACAAA--AAG--AAAAATGTTCAAGAA----------AA----GAAGAAAAACTTAAACAAAAAGAAGAGTTTTGTGCGCTAAAGAAAAAAAAGAGTGC-TAAAGGAAACAA--A---------TGAACG-----------G----------ACTCGGAAATTAAAA------------------------T--------GAG----ATT-----GTGTGTGTGAG------TGCAAGTGGA-AACC-----------------------------------------------------------------------------------------------------------------------------------G----ATGAT
droVir3 scaffold_13047:18519554-18519850 + TTTTCGGCCCCAGTCAGAGCGCACCATCGTCTTCAGCGAAGCACAAGCA-CACACAAC-------CACTAGGTGTGTGCTCTT-TGTACGTTACGG-GGGC--------A-----------CTGCCACACACAGAGAAGAATTTTCA-TTTTCACA--TACC-----A----------TA-C-A-----------------------------------------------CAC--------C-----------------AAAGTAGG--AAAAATGTACAAGAA----------AA----AAAGAAAAACT-------------------------------------------------TGAAAACTT--G---------TA-------------------------CATTCGA-------------------------------------------------ATT---------GTGTGAAAA-TTTTCCATTCAAC-C-------------AAT--AA-G-TTTATTCTTTATTGGT-----CGCAGTGCA--CAATTA-CGGAATATCTGAATACGCGAAAAACAAACGTAACC------------------------------------------AAAAA
droMoj3 scaffold_6540:7063394-7063704 + CCAGT---------CAGAGCGCACCATCGTCTTCAGCGAAGCACAAGCA-CACACAAC------CCACTAGGTGTGTGCTCTT-TGTACGTTACGG-GGGC--------A-----------CTGCCACACACAGAGAAGAATTTTCA-TTTTCACA--TACC---------------------ACA---------------------------------------------CAA--------C-----------------AAAGTGGGA-AAAAATGTACAAGAA----------AA----GAAGAAAAACT-------------------------------------------------TGAAAACTT--G---------CA-------------------------CATTCGA---AT---------------------------------------------------------TGTGAAAA-ATTTCCATTCAAT-AAAAAACGGCAAACAA-----------------------T-----CGCAGTGCAAACAATAAACCAAATA----AAT-CGCGAAACGTAAACGTAACCCAAAAAAATTGAAATTTAAGTGCGAAAAATTC-----C----GAAAG
droGri2 scaffold_15074:6181992-6182235 - --------------CAGAGCGCACCATCGTCTTCAACGAGGCACAAGCA-CACACAAC-------CACTAGGTGTGTGCTCTT-TGTACGTTACGA-CGGGGG-----CA-----------CTGCCACACACAGAGAAGAAT----------------------------------------------------TTTTCACATTCATTTTC--A----CATACCACA----CAC--------C-----------------AAAGTGGGCAAAAAATGTACAAG----------AAACGCAG---AAAAAACT-------------------------------------------------TGAAAACTT--G---------TA-------------------------CACTCAA---TT---------------------------------------------------------TGTGAAAA-TTTTCCATAAAC----------------AATCGAATG-CT-------------T-----CGCAGTGCA--------------------------------------------------------------------G------------AA-ACCAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CAG-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................ACCATCGTCTTCAGCGGAGC------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
..................GCGCACCATCGTCTTCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
....................................CGGAGC------A-CACACAGC-------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000200000000000
.......................CCATCGTCTTCAGCGGAGC------A-CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
........................................GC------A-CACACAGC-------AGCTAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
...................................................................CTAGGTGT--GCTCTTCCGTACGTAACGG-TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
...................................................................................................GCGGATTTTCA-----------CTG---------------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-.......1720.50100000001000000000
droSec2
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CAG-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................CGGAGC------A-CACACAGC-------AGCTAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020002
....................................................CACAGC-------AGCTAGGTGT--GCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................GCTAGGTGT--GCTCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.........................................................................................................................................................................................................................................................................................................GCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACG..............................................................................................................................................................................................................................................................................................2611.0010001
....................................CGGAGC------A-CACACAGC-------AGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................GCTAGGTGT--GCTCTTCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................ACCATCGTCTTCAGCGGAGC------A-CACACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001
....................................CGGAGC------A-CACACAGC-------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
........................................GC------A-CACACAGC-------AGCTAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..............................CTTCAGCGGAGC------A-CACACAGC-------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..................................AGCGGAGC------A-CACACAGC-------AGCTAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
...............................TTCAGCGGAGC------A-CACACAGC-------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.......................................................AGC-------AGCTAGGTGT--GCTCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
dm3
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTTCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CGA-------------------------------------AAAAGTGCATAAAACGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CGCGATGAAAACTT--G---------CGAAAA----------------------ACTCGC---TTTAAC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GAAG-----------------------------------------------------------------------------------------------------------------------------------GA-AAAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................GCTAGGTGT--GCTCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000030000000000000000000000000000000000000000000
...............................................................................................................................................................................................AAATTCTCACACAC----TC--G-----------------CAG--------C...................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGTCTTCAGCGGAGC------A-CACACAGC-------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGGAGC------A-CACACAGC-------AGCTAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000
....................................CGGAGC------A-CACACAGC-------AGCTAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................C-------AGCTAGGTGT--GCTCTTCCGTACGTAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....CCG-------CAGAGCGCACCATCGTCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGCGGAGC------A-CACACAGC-------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATTCTCACACAC----TC--G-----------------CAG--------CGA-------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................ACACAGC-------AGCTAGGTGT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTTCACA--CAGC-----C----------AG-C-ACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCAGCGGAGC------A-CACACAGC-------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................AGC-------AGCTAGGTGT--GCTCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AACGG-TTGCGGATTTTCA-----------CTG---------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................TCAGCGGAGC------A-CACACAGC-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................ATCGTCTTCAGCGGAGC------A-CACACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................TTCAGCGGAGC------A-CACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................ATCGTCTTCAGCGGAGC------A-CACACAGC-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATCGTCTTCAGCGGAGC------A-CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................GCTAGGTGT--GCTCTTCCGTACGTAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCACCATCGTCTTCAGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............AGAGCGCACCATCGTCTTCAGCGGAGC------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............AGAGCGCACCATCGTCTTCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
droEre2
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--CAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG--------CGG-------------------------------------AAAAGTGCACAAACGGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------GCTCGA---TTCAAC------------------------T---CC------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------GA---AAAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................TCAGCGGAGC------A-CACACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................GCGGAGC------A-CACACAGC-------AGCTAGGTGT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.........................ATCGTCTTCAGCGGAGC------A-CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
droYak3
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--TAGC-----C----------AG-C-ACACAGGAAAATTCTCACACAA----TC--G-----------------CAG--------CGG-------------------------------------AAAAGTGCACAAACGGCGT---GGAAAACTCGGGGGAAA---------------------------------T-CACGCTGAAAACTC--G---------CGAAAA----------------------ACTCGA---TTCAGC------------------------T---CG------A-TTGCT-----GTGCGTGTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------GAAAAAAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................ACCATCGTCTTCAGCGGAGC------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..................................................................GCTAGGTGT--GCTCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...................CGCACCATCGTCTTCAGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACATC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTCCACA--TAGC-----C----------AG-C-ACACAGGAAAATTCCCACACAC----TC--GCA---------------CAG--------CGA----------------A--------------------AAAAGTGCACAAAACTCGT---GGAAAACTCGGGGGAAAA--------------------------------T-C--GGTGAAAACTT--G---------CGAAAA-----------A-A-------CACTCGG---TT-AAT------------------------T---CC---CTG----ATT-----GTGCGTTTGAAAA-TTTTCCATCCGGT-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATCCCCAATTTCCACA--CAGCTAGCAC----------AG-C-ACACAGGAAAATTCTCACACAC----CC--G-----------------CAG---GCCG-CGG--------------------------------------AAAGTGCACAAAACTCGT---GGAAAACTCG----------------------------------------------CTGAAAATCC--G---------TAAAAAGCTCGTCGCAAACCCACTTCGAACTCGG---TT----GAAG-GTGGA---------AAAACT--------CTC----ATT-----GTGCGCTTGAAAA-TTTTCCATCCGGG-T-------------GGT--AACGGTTT-CCCTCCCCCCGCCC---CCCC----------------------------GCT-G---------------------------------AAGTGCGT------------GG-AAAAGAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCGTCCG-------CAGAGCGCACCATCGTTTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCATTTTC--ACTACTG---------------GATCCCCA-TTTCCACACACAGC-----C----------AGCC-ACACAGGAAAATTCTCACACAC----TC--G-----------------CAG---GCCA-CAA-------------------------------------AAAAGTGCACAAAATTCGT---AGAAAAACCGTGGAAAG---------------------------------T-C-CGTGGGAAACCC--T---------TGAAAA-----------A----------ACTCGG---TTAA-A-----TCGCA---------AAAACT--------CTG----ATT-----GTGCG-TTGAAAA-TTTTCCATCCGGGAGACG---------------------------------------------------------------------------------------------------------------------------------GCG----AAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCGTCCG-------CAGAGCG--CCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTCCA-TTTTCAT----AGC----CC----------AG-C-ACACAGGAAAATTCTCACACAC----CC--G-----------------CAGCAGGCGG-CGA----------------AAGTGTGC-----------AAGAAAGTGCACAAAAGTCGG---GAAAAACC----------------------------------------------CGTTGAAAGCTC--G---------CGTAAA----------------------ACTCGG---TTAAGC------------------------C--------CTC----CTT-----GTGCG-GTGAAAA-TTTTCCATCCGGA-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCGTCCG-------CAGAGCG--CCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTA---------------GATTTCCA-ATTCCAC----AGC----CC----------AG-C-ACACAGGAAAATTTTCACACAT----AC--G-----------------CAGCAGGCGG-CGA----------------AAGTGTGC-----------AAGAAAGTGCACAAAA-----------------------AA---------------------------------A-CACGTTAAAAGCTC--GCGAAACTCGCG---A----------------------ACTCGG---TTAAAC------------------------T--------CTC----CTT-----GTGCG-GTGAATAATTTTCCATCCGGA-GATG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCGTCCG-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GATTTTCA-TTTTCAT----AGC-----T----------AG-C-ACACAGGAAAATTC--ACACAC----TCAAAC-------GCACAAACGCAGCAGGCGG-CG------------------AGTGTGC-----------AAGAAAGTGCACGAAAACCGT---GAAAAACTCGGG----------------------------------------------GAAAACTC--G---------CGAAAA----------------------ACTCGG---TTAA-A------------------------T---AG---CTA----CTT-----GTGCG-GTGAAAA-TTTTCCATCCGGA-GAAG-----------------------------------------------------------------------------------------------------------------------------------G----AAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGCGT-------CAGAGCGCACCATCGTCTTCAGCGGAGC------A-CACACAGC-------AGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTGCGGATTTTCA-----------CTG---------------GACTTTCA-CAACCAC----AGG-----C----------AG-C---ACAGGAAAATTTTCACACACAC--TG--G-----------------CAGCA-GCGG-CGC----------------AAGAAAGC-----------AA----------------------G-AAAACTGCCTGA-AA---------------------------------A-CTCGCCAAA-ACTCTGG---------CGAAA----------------------CGTT--C---ATTAAT------------------------T---CGCAGCCCC-TTGCTGCAAAGTGC-TGTGGAAA-CTTTCC------T-AAAA-----------------------------------------------------------------------------------------------------------------------------------AA-AAGAAAASizeHit CountTotal NormTotal
No Reads
droAna3
------G-------CAGAGCGCCCCATCAACTCAAGCGGAGCACAAGCA-CACACAGCAGCTAGCAGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTACAA----TTA----CGGGACAC--------------------TGCCA-TTTTCACA----GG----CCACCATATCCAAG----CACAGGAAAATTTTCACACAC----AC--ACACACCTAACACACT-------------C-----------------GGTGTGTGC---------------------------GGTG-------ATATTCGAGCGGTG---------------------------------T---------------------------------------------------------TCGG---TT----GAAAA--GGAAAAA-CTGAAAAACTTTAAG------AAAACTT-----GTGCG-GTGAAAA-TTTTCCATCTGCA-AATG----------------------T-CCCTCCTCCTCCTCCCACCCA----------------------------GCTCGAAAAGCGAGTG-AACC---------------------------------GAGTG----AAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................CAAGCGGAGCACAAGCA-CACACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.....................................................ACAGCAGCTAGCAGCTAGGTGT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..........................TCAACTCAAGCGGAGCACAAGCA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droBip1
------G-------CAGAGCGCCCCATCAACTCAAGCGGAGCACAAGCA-CACACAGCAGCTAGCAGCTAGGTGT--GCTCTTCCGTACGTAACGG-TTACAA----TTA----CGGGACAC--------------------TGCCA-TTTTCACA----GG----GCACTACATCCAAG----CACAGGAAAATTTTCACACAC----AC--A----CCAAGCACACTCGCAG--------CGA--------------------------------------AAGGTGTGCA--CGGTG--------TATTCGGTGT----------------------------------------------------------------------------------------------TCGG---TT----AAAAAATGGAAAAACCTGAAAAACTTTAAG------A-AACTT-----GTGCG-GTGAAAA-TTTTCCATCTGCA-AATG----------------------T-CCCACCTCCTCC-----CCCA----------------------------GCTCGAAAAGCGAGTG-AACC------------------------------ACCGAGTG----AAAAGSizeHit CountTotal NormTotal
No Reads
droWil2
TCATT---------CAGAGCGCACCATCGTCTTCACCCAAGCACAAGCACCACACAGC--CAGTCAGCTAGGTGT--GCTCTTCCGTACGTTACGGGTTACGGG---GCA-----------CTGGCACACACA-------------------------CACC-----A----------AGAGAAAGAAGAAAAATTTTCACATACAC--TC--A-----------------CAA--AGCCAATCAAAAAGAATATAAAACAAA--AAG--AAAAATGTTCAAGAA----------AA----GAAGAAAAACTTAAACAAAAAGAAGAGTTTTGTGCGCTAAAGAAAAAAAAGAGTGC-TAAAGGAAACAA--A---------TGAACG-----------G----------ACTCGGAAATTAAAA------------------------T--------GAG----ATT-----GTGTGTGTGAG------TGCAAGTGGA-AACC-----------------------------------------------------------------------------------------------------------------------------------G----ATGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................GTCAGCTAGGTGT--GCTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200002
......................................................................................TACGTTACGGGTTACGGG---GCA-----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...................................................ACACAGC--CAGTCAGCTAGGTGT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............................................................................................................................................................................................................................................................................AAAATGTTCAAGAA----------AA----GAAGAA...................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................................................................................................................................................................................................GTGCGCTAAAGAAAAAAAAGAG....................................................................................................................................................................................................................................................................................................2211.00100001
.................................................................................................TTACGGG---GCA-----------CTGGCACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAG------TGCAAGTGGA-AACC-----------------------------------------------------------------------------------------------------------------------------------..........2011.00100010
.......................................................................................................................................................................................................................................................................................................................................GTTTTGTGCGCTAAAGAAAAAA.........................................................................................................................................................................................................................................................................................................2211.00100010
........................................................GC--CAGTCAGCTAGGTGT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................................................................................................................................................................................................................................................................GCTAAAGAAAAAAAAGAGTG..................................................................................................................................................................................................................................................................................................2011.00100010
................................................ACCACACAGC--CAGTCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.........................................................................................GTTACGGGTTACGGG---GCA-----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
droVir3
TTTTCGGCCCCAGTCAGAGCGCACCATCGTCTTCAGCGAAGCACAAGCA-CACACAAC-------CACTAGGTGTGTGCTCTT-TGTACGTTACGG-GGGC--------A-----------CTGCCACACACAGAGAAGAATTTTCA-TTTTCACA--TACC-----A----------TA-C-A-----------------------------------------------CAC--------C-----------------AAAGTAGG--AAAAATGTACAAGAA----------AA----AAAGAAAAACT-------------------------------------------------TGAAAACTT--G---------TA-------------------------CATTCGA-------------------------------------------------ATT---------GTGTGAAAA-TTTTCCATTCAAC-C-------------AAT--AA-G-TTTATTCTTTATTGGT-----CGCAGTGCA--CAATTA-CGGAATATCTGAATACGCGAAAAACAAACGTAACC------------------------------------------AAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAATTA-CGGAATATCTGAA.....................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
..................................................................ACTAGGTGTGTGCTCTT-TGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
..............................................GCA-CACACAAC-------CACTAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
CCAGT---------CAGAGCGCACCATCGTCTTCAGCGAAGCACAAGCA-CACACAAC------CCACTAGGTGTGTGCTCTT-TGTACGTTACGG-GGGC--------A-----------CTGCCACACACAGAGAAGAATTTTCA-TTTTCACA--TACC---------------------ACA---------------------------------------------CAA--------C-----------------AAAGTGGGA-AAAAATGTACAAGAA----------AA----GAAGAAAAACT-------------------------------------------------TGAAAACTT--G---------CA-------------------------CATTCGA---AT---------------------------------------------------------TGTGAAAA-ATTTCCATTCAAT-AAAAAACGGCAAACAA-----------------------T-----CGCAGTGCAAACAATAAACCAAATA----AAT-CGCGAAACGTAAACGTAACCCAAAAAAATTGAAATTTAAGTGCGAAAAATTC-----C----GAAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................CCATCGTCTTCAGCGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
....................GCACCATCGTCTTCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........................................GCACAAGCA-CACACAAC------CCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............AGAGCGCACCATCGTCTTCAGCGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
droGri2
--------------CAGAGCGCACCATCGTCTTCAACGAGGCACAAGCA-CACACAAC-------CACTAGGTGTGTGCTCTT-TGTACGTTACGA-CGGGGG-----CA-----------CTGCCACACACAGAGAAGAAT----------------------------------------------------TTTTCACATTCATTTTC--A----CATACCACA----CAC--------C-----------------AAAGTGGGCAAAAAATGTACAAG----------AAACGCAG---AAAAAACT-------------------------------------------------TGAAAACTT--G---------TA-------------------------CACTCAA---TT---------------------------------------------------------TGTGAAAA-TTTTCCATAAAC----------------AATCGAATG-CT-------------T-----CGCAGTGCA--------------------------------------------------------------------G------------AA-ACCAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................TTACGA-CGGGGG-----CA-----------CTGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101

Generated: 05/18/2015 at 06:23 PM