ID:

dsi_29088

Coordinate:

3l:7385357-7385506 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.87	-14.77	-14.57

Flybase annnotation

CDS [3l_7385356_7385356_+]; five_prime_UTR [3l_7385206_7385355_+]; exon [3l_7385206_7385356_+]; intron [3l_7385357_7385890_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTTCTGTATAGAAAATAAAAAACCAATTCAAACGCAAAAACAAACGAAAAGTAAGTCTGAATGTTAATTCATCTCATATAACTTCAATTTCTTTTCCACAACAAAAATAAAAAATAAACCGCCAATTATAAATGGGACATATTGAAAATATTCGATCCGATTCGATTTGAAACTAGAGTTTCAACTCTCACCACACCGAGCCGCAACACAGAGCAGCAAAACTCACCAAAAAGATCACGTAACACATTCC ************************************************...((..(((((....))))).))........((((((.....(((((..................................)))))...)))))).....((((......)))).(((((((....)))))))..(((........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M053 female body	O001 Testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................CGATTCGATTTGAAACTA...........................................................................	18	0	1	1.00	1	0	0	1	0	0	0
.......................CAATTCAAACGCAAAAACAAACGAAAA........................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
........................................................................................TGCTTATCCACGACAAAAATAAAAAA........................................................................................................................................	26	3	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................GTAAATATTCGATCCGAT.........................................................................................	18	1	3	0.33	1	0	0	0	1	0	0
.................................................AGTAAGGCTGAGTGTTA........................................................................................................................................................................................	17	2	14	0.07	1	0	0	0	0	1	0
.TTCTGGTTAGAAAATAGAAAA....................................................................................................................................................................................................................................	21	3	18	0.06	1	0	0	0	0	0	1
.................................................................................................................................................AAACATACGATCCGTTTCG......................................................................................	19	3	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

AAAGACATATCTTTTATTTTTTGGTTAAGTTTGCGTTTTTGTTTGCTTTTCATTCAGACTTACAATTAAGTAGAGTATATTGAAGTTAAAGAAAAGGTGTTGTTTTTATTTTTTATTTGGCGGTTAATATTTACCCTGTATAACTTTTATAAGCTAGGCTAAGCTAAACTTTGATCTCAAAGTTGAGAGTGGTGTGGCTCGGCGTTGTGTCTCGTCGTTTTGAGTGGTTTTTCTAGTGCATTGTGTAAGG ************************************************...((..(((((....))))).))........((((((.....(((((..................................)))))...)))))).....((((......)))).(((((((....)))))))..(((........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...............................................................................................GGTGTTGTTTTTATTTTT.........................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TCTCGTCGATTTTAGTGGTTTCT..................	23	3	2	0.50	1	0	1	0	0	0	0
............................................................................................AATGGGGTTGATTTTATTTTTTATT.....................................................................................................................................	25	3	3	0.33	1	0	0	1	0	0	0
..................................................................TAGGTAGAGTCTATTGAAG.....................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0	0
....................................................................AGGAGAGCATATTCAAGTTAA.................................................................................................................................................................	21	3	6	0.17	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................AGTGCATGGTGTAAG.	15	1	9	0.11	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................AGGGGTTTTTCAAGTGCA..........	18	2	13	0.08	1	0	0	0	0	1	0
...........................................................................................................................................................................................AGTGGTGTGGCTTGGGGAT............................................	19	3	17	0.06	1	0	0	0	0	1	0
...............................................................................................GGGGTTGATTTTATTTTTT........................................................................................................................................	19	2	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................TTTGTATGCTAGGCAAAGC......................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
...........................................................................................AAAAGATGTTGTTTTTTTTT...........................................................................................................................................	20	2	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 07:11 AM