ID:

dsi_29087

 Coordinate:

2r:5791583-5791644 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.8 -7.6 -6.9

Flybase annnotation

five_prime_UTR [2r_5791685_5791826_-]; CDS [2r_5791645_5791684_-]; exon [2r_5790618_5791582_-]; CDS [2r_5790618_5791582_-]; exon [2r_5791645_5791826_-]; intron [2r_5791583_5791644_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
CGAGTCCACGATGACGGATTTCAATGCATCCGGAGTCATTCTGTCTTTGGGTGCGTAGGAAGTCTGCTCCATTTGTGATCGTACTCAAAATAATAGTTTTGTAAACCGACAGATGAGTACTTCGAGCAATGCGTAGAACCGAAACCCAGAATACCGCCACGA
**************************************************.............(((............((((...((((((....))))))...)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 M053
female body
.............................................TTTGGGAGCGTAGGAA..................................................................................................... 16 1 2 3.50 7 2 0 1 0 2 2 0 0 0
............................................CTTTGGGAGCGTAGG....................................................................................................... 15 1 16 2.13 34 27 0 0 1 4 2 0 0 0
........................................................................................AATAATAGTTTTGTAAAC........................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGTAGAACCGAAACCCAGAATACCGC..... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................................................................................TGCGTAGAACCGAAACCCAGAATAC........ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................TTGGGTGCGTAGGAAGTCTGCT.............................................................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0
............................................CTTTGGGAGCGTAGGA...................................................................................................... 16 1 3 1.67 5 4 0 0 0 1 0 0 0 0
.........................................................................................................................TCGAGCAATGCGTAGAACCGAAACCCA.............. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................TGAGTACTTCGAGCAATGCGTAGAACA...................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................TACTTCGAGCAATGCGTAGAACCGA.................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0
................................................................................................................ATGAGTACTTCGAGCAATGCGTAG.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................TGCATCCGGAGTCATTCTGTCTTTGGG............................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................TGCGTAGAACCGAAACCCAGAATACCGCCT... 30 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.............................................TTTGGGAGCGTAGGA...................................................................................................... 15 1 6 0.83 5 2 0 0 0 3 0 0 0 0
...........................................CCTTTGGGAGCGTAGGAA..................................................................................................... 18 2 3 0.67 2 0 0 2 0 0 0 0 0 0
............................................CTTTGGGAGCGTAGGAAA.................................................................................................... 18 2 3 0.67 2 0 1 0 0 1 0 0 0 0
.................................................................................................................................TGCGTAGGACCTAAACC................ 17 2 2 0.50 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................GCGTAGACCCGAAACC................ 16 1 5 0.40 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................TAATTCGAGCAACGCGCAGAA........................ 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................GTGTAGACCCGAAACC................ 16 2 20 0.30 6 0 0 0 4 1 1 0 0 0
.............................................TTTGGGAGCGTAGGAAA.................................................................................................... 17 2 17 0.29 5 2 0 0 1 2 0 0 0 0
..................................................GTGCGTAGGAAGTTTG................................................................................................ 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................GCATGGCGTAGACCCGAAAC................. 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................GCGTAGACCCGAAAC................. 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................CGTAGACCCGAAACC................ 15 1 13 0.15 2 1 0 0 1 0 0 0 0 0
.....................................................................................................................................TAGACCCGAAACCCGG............. 16 2 20 0.15 3 1 0 0 2 0 0 0 0 0
..............................................TTGGGAGCGTAGGAA..................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
............................................CTTTGGGAGCGTAGGTA..................................................................................................... 17 2 15 0.13 2 2 0 0 0 0 0 0 0 0
..........................................................GAGGTCTGCTCCATT......................................................................................... 15 1 17 0.12 2 0 0 2 0 0 0 0 0 0
............................................CTTTGGGAGCGTAGGAC..................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................GTAGACCCGAAACCAAG............. 17 2 18 0.11 2 0 0 0 2 0 0 0 0 0
...................................................TTCGTAGGAAGTCTGCC.............................................................................................. 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0
............................................CTTTGGGAGCGTAGGTAA.................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 2 0 0
....................................................................................TCAAAATAATAGTTTGCTAGA......................................................... 21 3 12 0.08 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................GTGTAGACCCGAAACCAAG............. 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0
........................................CTCGCTTTGGGTGCGTA......................................................................................................... 17 2 19 0.05 1 1 0 0 0 0 0 0 0 0
.......................................TCTGTCTACGGGTGCG........................................................................................................... 16 2 19 0.05 1 1 0 0 0 0 0 0 0 0
.............................................TTTGGGAGCGTAGGGA..................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................AAACTCCGAATACCGC..... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCTCAGGTGCTACTGCCTAAAGTTACGTAGGCCTCAGTAAGACAGAAACCCACGCATCCTTCAGACGAGGTAAACACTAGCATGAGTTTTATTATCAAAACATTTGGCTGTCTACTCATGAAGCTCGTTACGCATCTTGGCTTTGGGTCTTATGGCGGTGCT
**************************************************.............(((............((((...((((((....))))))...)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................CGCAGCTTGTCTTTGG................ 16 2 20 0.40 8 8 0
..................................................................................................................................CGCAGCTTGTCTTTGGG............... 17 2 16 0.13 2 2 0
.....................................................................GTAAACACTAGCAAG.............................................................................. 15 1 12 0.08 1 0 1

Generated: 04/23/2015 at 11:03 PM