dsi_29080

exon [3r_13302043_13302419_+]; CDS [3r_13302043_13302419_+]; intron [3r_13302420_13302862_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGCTACCTGAAAGAAAAGTGAGTGTCCGACTCGGAAGTTGGCCAAAAGCGGCACAGCGAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATCCACTTCCCCAGCCATTGGGGGTCCACAGCTCTGTTAGTTGTCCATACACGGCAGTGTGTGTGTGTATGTGCATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACCAGACA ************************************************....((((((((..((.(((((((((......))).)))).....)).))....))))))))...........((((.(((((.((((((((((.....))))))...((((((.....))))))((......)).)))).)))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
.TGGGCCTCAGCGATAAGGAGCAGGA................................................................................................................................................................................................................................	25	0	1	2.00	2	0	0	0	2	0	0	0
........................................................GTCCGACTCGGAAGTTGGC...............................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................AAAATTGTGCAACTCGTATAC..........................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................TTGGCCATCGGTGCAGTAGGCT.......	22	1	1	1.00	1	0	1	0	0	0	0	0
..........................AGTGCTGCGCTACCTGAAAGAA..........................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
............GATAAGTAGCAGGAAGTGCTGCGCTA....................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0
...GGCCTCAGCGATAAGGAGCAGGA................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0
....................GCAGGAAGTGCTGCGC......................................................................................................................................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................TGTGTGTGCATGATCGTTGTC.................................	21	1	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................AATCTGGGCCATCGGTACTG.............	20	3	5	0.60	3	0	3	0	0	0	0	0
..................................GCTACCTGAAAGAAAA........................................................................................................................................................................................................	16	0	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................CAATCTGGGCCATCGGTACT..............	20	3	3	0.33	1	0	1	0	0	0	0	0
...................................................................................................................................ATCCAGTTCCCCAGCCA......................................................................................................	17	1	4	0.25	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................AATCTTGGCCATCGCTACTG.............	20	3	10	0.20	2	0	2	0	0	0	0	0
.....................TAGGAAGTGCCGCGCTA....................................................................................................................................................................................................................	17	2	5	0.20	1	1	0	0	0	0	0	0
.................................................................................................GTGCAACTCGGGTTCAAGG......................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	1	0
..........GCGATAATGAGCCCGAAGT.............................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0
.......................................................................TGGTCAAAAGCGGCA....................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1

CACCCGGAGTCGCTATTCCTCGTCCTTCACGACGCGATGGACTTTCTTTTCACTCACAGGCTGAGCCTTCAACCGGTTTTCGCCGTGTCGCTTTTAACACGTTGAGCCTATGTTACAATGGTAATGTAGTGTAGGTGAAGGGGTCGGTAACCCCCAGGTGTCGAGACAATCAACAGGTATGTGCCGTCACACACACACATACACGTACTAGCAACAGTTAGAACCGGTAGCCACGTCATCCGTGGTCTGT ************************************************....((((((((..((.(((((((((......))).)))).....)).))....))))))))...........((((.(((((.((((((((((.....))))))...((((((.....))))))((......)).)))).)))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries
.......................................................................................................................................................CCCCAGGTGTCGAGACAATCA..............................................................................	21	0	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................CAGGAGTCGAGACAAT................................................................................	16	1	2	0.50	1	0	1	0	0	0	0
..................................................................................................ACGTTGAGACTATAGTACAAT...................................................................................................................................	21	3	3	0.33	1	0	0	1	0	0	0
.....................................................................................................................AAGGTGATGCAGTGTAGGTG.................................................................................................................	20	3	11	0.27	3	0	0	2	1	0	0
..............................................................................................................................TAGTTTATGTGAAGGGGACGGT......................................................................................................	22	3	4	0.25	1	0	0	0	0	1	0
.......................................................................................................................GGTGATGCAGTGTAGGTG.................................................................................................................	18	2	4	0.25	1	0	0	0	1	0	0
...........................................................................................................CTATGTTACAATGGCA...............................................................................................................................	16	1	5	0.20	1	0	1	0	0	0	0
....................................................................................................................AAAGGTGATGCAGTGTAGGT..................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	1
..........................................................................................................................................................CAGGAGTCGAGACAATT...............................................................................	17	2	12	0.08	1	0	1	0	0	0	0
........................................................................................................................................................CCCAGGTGTCGAGGCGA.................................................................................	17	2	15	0.07	1	0	1	0	0	0	0
....................................................................................................................AAAGGTGATGTAGTGTA.....................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:13302370-13302619 +	dsi_29080	GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGCTACCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATC--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCTGTTA-GTTGT-----CCATAC-ACGGC-----AGTG-------------TG------TGTG---TGTA-TGTG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droSec2	scaffold_0:14165468-14165714 +		GTGGGCCTCAGCGTTAAGGAGCAGGAAGTGCTGCGCTACCTGAA--GAAAGTGAGTG---------------------------TCCG---ACTCGG-AGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTAACATTACATCACATC--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----AGTG-------------TG------TGTG---TGTG-TGTG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
dm3	chr3R:7804661-7804916 -		GTGGGCCTCAGCGATAAGGAGCAGGAAGTGTTGCGGTACCTGAAAGAAAAGTAAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAT-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATT--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCGGCTA-GTTGT-----CCATAC-ACGGC-----AGTGTGTGTG-------TG------TGTG---TGTG-TATG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droEre2	scaffold_4770:13815815-13816070 +		GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGGTACCTGCAAGCAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATATCC-CAC--------TTCC-C------------------------------------------------------------------------------------------------TGCCTGC-------CAAT------GGGGGTCCAC--------------TGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----AGTGTGTGT-----------------GTG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droYak3	3R:12118017-12118294 -		GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGGTACCTGAAACAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATC--CCACTTCCCACTTCC-C------------------------------------------------------------------------------------------------TGCCTGCCATCGTGGGCA------GGGGGTCCAC--------------TGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----CGTGTGTGT---GAGTGTG------TGTG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droEug1	scf7180000409615:22068-22302 -		CTGGGCCTAAACGATAAGGAGCAGGAAGTGCTGCAGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAA-GCAGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTTGA----GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATA--------------------------------------------TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droBia1	scf7180000302402:10013634-10013870 +		CTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCAGTATCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAAC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTTC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATAC-A------------------------------------TA---TATG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCGCC-----AGACA
droTak1	scf7180000415245:83704-83945 -		CTGGGCCTCAACGATAAGGAGCAGGAAGTGCTGCGGTACCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTTGGATACGATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------TGTTAGCGGGGGGGGTCCGC--------------TCCTCGGTTA-GTTGT-----ACATAT-AC-----------------------------------------GTG-TGTG----GCATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droEle1	scf7180000490967:288755-288995 +		CTGGGCCTCAACGAAAAGGAGCAGGAAGTGCTGCGGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAT-GCGGC--ACAGGC---ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGCTA-GTTGT-----CCATA---------------------------------------TG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droRho1	scf7180000779157:25219-25451 +		CTGGGCCTCAACGATAAGGAGCAGGAAGTGCTGCAGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATA--------------------------------------------TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droFic1	scf7180000453812:1324099-1324356 +		CTGGGACTCAACGATAAGGAGCAGGAAGTGCTGCGATACCTGAAAGAAAAGTGAGTG---------------------------TGCGGCCACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------TGTGGTCCAC--------------TCCTCGTTTA-GTTGT-----CCATAC-ATTTA-----TATG-------------TGCACACATATG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droKik1	scf7180000302255:281333-281561 -		CTGGGATTAAGCGATAAGGAGCAGGAAGTGCTGCGGTATCTGGGAGAAAGGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAAAGCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACTACC-CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------A--------------T-----CCATACCAC----------------------------------------TATG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACCGCC--AGACG
droAna3	scaffold_12911:2618281-2618551 +		CTGGGCCTCAGCGACAAGGAGCAGGAAGTGCTGGAGTATCTGCGCAAAAAGTGAGTG---------------------------TGCAA-AACTCGGAAGTTGGCCAAA--GCCGC-----------ACTGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCC---A-G---TCCAGGCCATAA-CCCGCACACTTGTCTGTGTGTAGAGCTTA------TGTGGCTTATGCTGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
droBip1	scf7180000396714:488012-488271 -		GTGGGCCTCAGCGACCAGGAGCAGGAAGTGCTGGAGTATCTGCGCAAAAAGTGAGTG---------------------------TGCAA-AACTCGGAAGTTGGCCAAA--GCCGC-----------ACTGC-AAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCC---A-G---TCCAGACCATAA-AAAGCTCACTAGTCTGTCTGTA-----------------GCTTATGTTGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA
dp5	2:22557614-22557865 -		CAGGGTCTCACCGAAAAGGAGCAGGAAGTGCTGTTGTATCTGAGCAAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-ACCAGACAAAGAC---AGAGCTAAAAATTGTGCAACTCGGATACAATGTTAGGATTACATCATTCCC-CGC--------TTCC-A------------------------------------------------------------------------------------------------TG----C-------GGTTGACCAGGCCAGACCCG--TCCCAGACCAAGT--G------C----------------------------------ATG--------G------CGTC---CATA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----GGGAA
droPer2	scaffold_3:5336849-5337101 -		CAGGGCCTCACCGAAAAGGAGCAGGAAGTGCTGTTGTATCTGAGCAAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-ACCAGACAAAGAC---AGAGCTAAAAATTGTGCAACTCGGATACAATGTTAGGATTACATCATTCCCCCGC--------TTCC-A------------------------------------------------------------------------------------------------TG----G-------GGTTGACCAGGCCAGACCCG--TCCCAGACCAAGT--G------C----------------------------------ATG--------G------CGTC---CATA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----GGGAA
droWil2	scf2_1100000004902:2224072-2224359 +	dwi_2448	AATGGACTCAATGCCAAGGAGCAGGAAGTGTTTGATCACTTGACCAAAAAGTAAGTGGAAATGCTG------------------TCCG---AGTCGGAAGTTGACCAAAAAACAACAACAAGACAAAACAGC-AAAAATTGTGCAACTCGGATAAAATGTTACTATTACATCATATC--CAC--------TTAGCAAATGGCTTGGAGTGGG--------------------------------------GTTA------------------------------GTGGGG--TG----G-------GG--------TGGGGTCCGGTT----------AGAGTCTGGTTA---TGT-----CCA-A--------------TG-----------------------T----TTTA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTTTAGTAGGCAGCCCCAACGCCA
droVir3	scaffold_13047:1665750-1666048 +	dvi_15137	GACGGCCTCAGTGCGAAAGAGCAGGAAGTGCTGCAGCATCTCAGAGAAAAGTGAGTGGTGGTCAAGTTGCAGTCGAACTTGCACTTGT---ACTCGGAAGTTATACG----------------------------AAATTGTGCAACTCGGATACAATGTTACTATTGCATCACATC--CGA--------CTCCGT------CGGCAGTCGCCGTCAACAACTG--------------------TCCAGACACA--------GAGACAGAAATACCAACAACTCAAAGTCCCAGTCCGT-------GCTT------G--AGTCGGG--------------T--CCATGTC-GTTGT------------------------------------------------ATA---TTTA-TGTG-----CCCACTCATTGACAATCTTGGCTATCGGTGCAGTAGGCA------------
droMoj3	scaffold_6540:5685986-5686292 +		CACGGTCTCAGCCAGCAGGAGCAGGAAGTGCTGCAGCATCTCAGAGAAAAGTGAGTGGTGGCCA-G------------------TCGC---ACTCGGAAGTTGACCG----------------------------AAATTGTGCAACTCGGATACAATGTTACTGTTGCATCACATC--CGACTC--CATTTGC------------AGTCGCAGCCAAAGACAGAGACAACAACAATTCACAGCACCAGAGACA--------GAGACAGCAATAGGCACAATTTGCAGTCTCGATC--C-------GAGT------CAGAGCCGGC--------------T--GCCATTA-GTTGT-----CCAT----------------------------------------------TTA-TGTG-----CCCACTCATTGTCAATCTTGGCCATCGGTGCAGTAGGCAGC-----CAGCG
droGri2	scaffold_15074:6098865-6099174 -		AACGGCCTCAATGAACGGGAGCAGGAAGTGTTGCAGCATCTCAAAGATAAGTGAGTGGCGGTCAAGTTGCATTC------GCACTCGA---TCTCGGAAGTTGACCG----------------------------AAATTGTGCAACTCGGATACAATGTTACTGTTGCATCATATC--CGACTC--CATTTCC------------AGACACAC----AGATAGAGACA---------CA------CAGAGACAGAGAGTCGGAGACAGACAT----TCAATTCACAATCCCAGTCTCC-------CAAT------CGGAGTCCGG--------------T--TCCATTATATTGT-----CT-----------------------------------------------TTTA-TGTGCATAG--AG-ATATTGTCAAACTTGGCCATCGGTGCAGTAGGCAGC--C--AAACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGCTACCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATC--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCTGTTA-GTTGT-----CCATAC-ACGGC-----AGTG-------------TG------TGTG---TGTA-TGTG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.TGGGCCTCAGCGATAAGGAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................G---------------------------TCCG---ACTCGGAAGTTGGC..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATCGGTGCAGTAGGCT............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGTGCTGCGCTACCTGAAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGCCTCAGCGATAAGGAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCAGGAAGTGCTGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................GCTACCTGAAAGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTGGGCCTCAGCGTTAAGGAGCAGGAAGTGCTGCGCTACCTGAA--GAAAGTGAGTG---------------------------TCCG---ACTCGG-AGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTAACATTACATCACATC--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----AGTG-------------TG------TGTG---TGTG-TGTG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........CAGCGTTAAGGAGCAGGAAGTGCTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
................AGGAGCAGGAAGTGCTGCGCTACCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...................AGCAGGAAGTGCTGCGCTACCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............TAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......CTCAGCGTTAAGGAGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........CAGCGTTAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
........CAGCGTTAAGGAGCAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0

dm3

GTGGGCCTCAGCGATAAGGAGCAGGAAGTGTTGCGGTACCTGAAAGAAAAGTAAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAT-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATT--CAC--------TTCCCC------------------------------------------------------------------------------------------------AG----C-------CATT------GGGGGTCCAC--------------AGCTCGGCTA-GTTGT-----CCATAC-ACGGC-----AGTGTGTGTG-------TG------TGTG---TGTG-TATG-----CATGATCGTTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............GATAAGGAGCAGGAAGTGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................GCAGGAAGTGTTGCGGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCGATAAGGAGCAGGAAGTGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................C--------------AGCTCGGCTA-GTTGT-----CCATA.............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GAGCAGGAAGTGTTGCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGCGATAAGGAGCAGGAAGTGTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............AAGGAGCAGGAAGTGTTGCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGTGTTGCGGTACCTGAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGTG-------TG------TGTG---TGTG-TATG-----CATG...............................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TG-------TG------TGTG---TGTG-TATG-----CATG...............................................	20	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG------TGTG---TGTG-TATG-----CATG...............................................	18	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG-------TG------TGTG---TGTG-TATG-----CAT................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................G-------TG------TGTG---TGTG-TATG-----CATG...............................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGTG-------TG------TGTG---TGTG-TATG-----CAT................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGTG-------TG------TGTG---TGTG-TATG-----CA.................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droEre2

GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGGTACCTGCAAGCAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATATCC-CAC--------TTCC-C------------------------------------------------------------------------------------------------TGCCTGC-------CAAT------GGGGGTCCAC--------------TGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----AGTGTGTGT-----------------GTG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........GCGATAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	1	0	0	2	0	0
.........AGCGATAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	3	0	0
............GATAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	2	1	0
...................AGCAGGAAGTGCTGCGGTACCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0
....................GCAGGAAGTGCTGCGGTACCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
...........................GTGCTGCGGTACCTGCAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........AGCGATAAGGAGCAGGAAGTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................AAAA-GCGGC-----------ACAGC-GAAAATTGT.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
........................GAAGTGCTGCGGTACCTGCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................GAAGTGCTGCGGTACCTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...GGCCTCAGCGATAAGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.........AGCGATAAGGAGCAGGAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........CAGCGATAAGGAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......CTCAGCGATAAGGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

GTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCGGTACCTGAAACAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACATC--CCACTTCCCACTTCC-C------------------------------------------------------------------------------------------------TGCCTGCCATCGTGGGCA------GGGGGTCCAC--------------TGCTCGGTTA-GTTGT-----CCATAC-ACGGC-----CGTGTGTGT---GAGTGTG------TGTG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............GATAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	1	1	0	0	0	4	0	0	0	0
...........CGATAAGGAGCAGGAAGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.............................GCTGCGGTACCTGAAACAAAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................AGCAGGAAGTGCTGCGGTACCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AAGGAGCAGGAAGTGCTGCGGTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......TCAGCGATAAGGAGCAGGAAGTGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............GATAAGGAGCAGGAAGTGCTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................AGCAGGAAGTGCTGCGGTACCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CTGGGCCTAAACGATAAGGAGCAGGAAGTGCTGCAGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAA-GCAGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTTGA----GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATA--------------------------------------------TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGGGCCTCAGCGATAAGGAGCAGGAAGTGCTGCAGTATCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAAC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTTC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATAC-A------------------------------------TA---TATG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCGCC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGGGCCTCAACGATAAGGAGCAGGAAGTGCTGCGGTACCTGAAAGAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTTGGATACGATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------TGTTAGCGGGGGGGGTCCGC--------------TCCTCGGTTA-GTTGT-----ACATAT-AC-----------------------------------------GTG-TGTG----GCATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGGGCCTCAACGAAAAGGAGCAGGAAGTGCTGCGGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAT-GCGGC--ACAGGC---ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGCTA-GTTGT-----CCATA---------------------------------------TG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTGGGCCTCAACGATAAGGAGCAGGAAGTGCTGCAGTACCTGAAAGAAAAGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCGGTTA-GTTGT-----CCATA--------------------------------------------TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGGGACTCAACGATAAGGAGCAGGAAGTGCTGCGATACCTGAAAGAAAAGTGAGTG---------------------------TGCGGCCACTCGGAAGTTGGCCAAAA-GCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------TGTGGTCCAC--------------TCCTCGTTTA-GTTGT-----CCATAC-ATTTA-----TATG-------------TGCACACATATG---TGTG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGGGATTAAGCGATAAGGAGCAGGAAGTGCTGCGGTATCTGGGAGAAAGGTGAGTG---------------------------TGCG---ACTCGGAAGTTGGCCAAAAAGCGGC-----------ACAGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCACTACC-CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------A--------------T-----CCATACCAC----------------------------------------TATG-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACCGCC--AGACG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTGGGCCTCAGCGACAAGGAGCAGGAAGTGCTGGAGTATCTGCGCAAAAAGTGAGTG---------------------------TGCAA-AACTCGGAAGTTGGCCAAA--GCCGC-----------ACTGC-GAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCC---A-G---TCCAGGCCATAA-CCCGCACACTTGTCTGTGTGTAGAGCTTA------TGTGGCTTATGCTGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................GCAGGAAGTGCTGGAGTATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......CTCAGCGACAAGGAGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......CTCAGCGACAAGGAGCAGGAAGTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0

droBip1

GTGGGCCTCAGCGACCAGGAGCAGGAAGTGCTGGAGTATCTGCGCAAAAAGTGAGTG---------------------------TGCAA-AACTCGGAAGTTGGCCAAA--GCCGC-----------ACTGC-AAAAATTGTGCAACTCGGATACAATGTTACCATTACATCATTTC--CAC--------TTCC-C------------------------------------------------------------------------------------------------TG----C-------GGTT------GGGGGTCCAC--------------TCCTCC---A-G---TCCAGACCATAA-AAAGCTCACTAGTCTGTCTGTA-----------------GCTTATGTTGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----AGACA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGGGTCTCACCGAAAAGGAGCAGGAAGTGCTGTTGTATCTGAGCAAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-ACCAGACAAAGAC---AGAGCTAAAAATTGTGCAACTCGGATACAATGTTAGGATTACATCATTCCC-CGC--------TTCC-A------------------------------------------------------------------------------------------------TG----C-------GGTTGACCAGGCCAGACCCG--TCCCAGACCAAGT--G------C----------------------------------ATG--------G------CGTC---CATA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----GGGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................AGGAAGTGCTGTTGTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................AGGAAGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................G------C----------------------------------ATG--------G------CGTC---CATA-TGTG-----CAT................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................GAGCAGGAAGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CAGGAAGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............AAAGGAGCAGGAAGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............AAAGGAGCAGGAAGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAGGGCCTCACCGAAAAGGAGCAGGAAGTGCTGTTGTATCTGAGCAAAAAGTGAGTG---------------------------TCCG---ACTCGGAAGTTGGCCAAAA-ACCAGACAAAGAC---AGAGCTAAAAATTGTGCAACTCGGATACAATGTTAGGATTACATCATTCCCCCGC--------TTCC-A------------------------------------------------------------------------------------------------TG----G-------GGTTGACCAGGCCAGACCCG--TCCCAGACCAAGT--G------C----------------------------------ATG--------G------CGTC---CATA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTGCAGTAGGCACC-----GGGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................GTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	11.00	11	11	0	0	0	0	0
..........................AGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	10.00	10	10	0	0	0	0	0
..........................AGTGCTGTTGTATCTGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	2	1	0	0	0	0
.......................GGAAGTGCTGTTGTATCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
..........................AGTGCTGTTGTATCTGAGCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
....................GCAGGAAGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1
......................AGGAAGTGCTGTTGTATCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................ACATCATTCCCCCGC--------TTCC-A------------------------------------------------------------------------------------------------TG----G-------.........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................AGCAGGAAGTGCTGTTGTATCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........CACCGAAAAGGAGCAGGAAGTGCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................AGCAGGAAGTGCTGTTGTATCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................AGGAAGTGCTGTTGTATCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................GAGCAGGAAGTGCTGTTGTATCTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................GGAGCAGGAAGTGCTGTTGTATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................GTTGTATCTGAGCAAAAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGTCAATCTTGGCCATCGGT......................	26	1	1.00	1	0	0	1	0	0	0

droWil2

AATGGACTCAATGCCAAGGAGCAGGAAGTGTTTGATCACTTGACCAAAAAGTAAGTGGAAATGCTG------------------TCCG---AGTCGGAAGTTGACCAAAAAACAACAACAAGACAAAACAGC-AAAAATTGTGCAACTCGGATAAAATGTTACTATTACATCATATC--CAC--------TTAGCAAATGGCTTGGAGTGGG--------------------------------------GTTA------------------------------GTGGGG--TG----G-------GG--------TGGGGTCCGGTT----------AGAGTCTGGTTA---TGT-----CCA-A--------------TG-----------------------T----TTTA-TGTG-----CATGATCATTGTCAATCTTGGCCATCGGTTTAGTAGGCAGCCCCAACGCCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
AATGGACTCAATGCCAAGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
AATGGACTCAATGCCAAGGAGCAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0
........CAATGCCAAGGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
AATGGACTCAATGCCAAGGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGTAGGCAGCCCCAAC....	20	1	1.00	1	0	0	0	1	0
....................GCAGGAAGTGTTTGATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............GCCAAGGAGCAGGAAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................AATGCTG------------------TCCG---AGTCGGAAGT......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........ATGCCAAGGAGCAGGAAGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........AATGCCAAGGAGCAGGAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
............GCCAAGGAGCAGGAAGTGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................TGTGCAACTCGGATAAAATG............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................AGGAAGTGTTTGATCACTTGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......TCAATGCCAAGGAGCAGGAAGTGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0

droVir3

GACGGCCTCAGTGCGAAAGAGCAGGAAGTGCTGCAGCATCTCAGAGAAAAGTGAGTGGTGGTCAAGTTGCAGTCGAACTTGCACTTGT---ACTCGGAAGTTATACG----------------------------AAATTGTGCAACTCGGATACAATGTTACTATTGCATCACATC--CGA--------CTCCGT------CGGCAGTCGCCGTCAACAACTG--------------------TCCAGACACA--------GAGACAGAAATACCAACAACTCAAAGTCCCAGTCCGT-------GCTT------G--AGTCGGG--------------T--CCATGTC-GTTGT------------------------------------------------ATA---TTTA-TGTG-----CCCACTCATTGACAATCTTGGCTATCGGTGCAGTAGGCA------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...GGCCTCAGTGCGAAAGAGCAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...GGCCTCAGTGCGAAAGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......CTCAGTGCGAAAGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...GGCCTCAGTGCGAAAGAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............GCGAAAGAGCAGGAAGTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
GACGGCCTCAGTGCGAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCTTGGCTATCGGTGCAGTAGGC.............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGTC-GTTGT------------------------------------------------ATA---TTTA-TGTG-----CCCACT.............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GCTGCAGCATCTCAGAGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CTCAGTGCGAAAGAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........GTGCGAAAGAGCAGGAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................TT------G--AGTCGGG--------------T--CCATGTC-GTT.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................AAGAGCAGGAAGTGCTGCAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TCAGTGCGAAAGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................AATTGTGCAACTCGGATA.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GCACTTGT---ACTCGGAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGGCTATCGGT......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CATCACATC--CGA--------CTCCGT------CGGCAGT..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TCAGTGCGAAAGAGCAGGAAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGCCTCAGTGCGAAAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TATACG----------------------------AAATTGTGCAACTCGGATAC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGAGCAGGAAGTGCTGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACGGTCTCAGCCAGCAGGAGCAGGAAGTGCTGCAGCATCTCAGAGAAAAGTGAGTGGTGGCCA-G------------------TCGC---ACTCGGAAGTTGACCG----------------------------AAATTGTGCAACTCGGATACAATGTTACTGTTGCATCACATC--CGACTC--CATTTGC------------AGTCGCAGCCAAAGACAGAGACAACAACAATTCACAGCACCAGAGACA--------GAGACAGCAATAGGCACAATTTGCAGTCTCGATC--C-------GAGT------CAGAGCCGGC--------------T--GCCATTA-GTTGT-----CCAT----------------------------------------------TTA-TGTG-----CCCACTCATTGTCAATCTTGGCCATCGGTGCAGTAGGCAGC-----CAGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............CAGCAGGAGCAGGAAGTGCTGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATCTTGGCCATCGGTGCA...................	22	1	2.00	2	0	0	0	0	0	2
............CAGCAGGAGCAGGAAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
.........AGCCAGCAGGAGCAGGAAGTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................AATAGGCACAATTTGCAGT..........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........AGCCAGCAGGAGCAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........CCAGCAGGAGCAGGAAGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................GAGCAGGAAGTGCTGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....GTCTCAGCCAGCAGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...GGTCTCAGCCAGCAGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............AGCAGGAGCAGGAAGTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droGri2

AACGGCCTCAATGAACGGGAGCAGGAAGTGTTGCAGCATCTCAAAGATAAGTGAGTGGCGGTCAAGTTGCATTC------GCACTCGA---TCTCGGAAGTTGACCG----------------------------AAATTGTGCAACTCGGATACAATGTTACTGTTGCATCATATC--CGACTC--CATTTCC------------AGACACAC----AGATAGAGACA---------CA------CAGAGACAGAGAGTCGGAGACAGACAT----TCAATTCACAATCCCAGTCTCC-------CAAT------CGGAGTCCGG--------------T--TCCATTATATTGT-----CT-----------------------------------------------TTTA-TGTGCATAG--AG-ATATTGTCAAACTTGGCCATCGGTGCAGTAGGCAGC--C--AAACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........AATGAACGGGAGCAGGAAGTGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1
................GGGAGCAGGAAGTGTTGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
......CTCAATGAACGGGAGCAGGAAGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
.............AACGGGAGCAGGAAGTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.....................................................................CATTC------GCACTCGA---TCTCGGAAGT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

dsi_29080

3r:13302420-13302569 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.5	-42.3	-42.2