ID:

dsi_2908

 Coordinate:

3r:10650064-10650213 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTTCCTTTTTCTTACAGTATTTCACTGGCAAGCTACAATAATGGGCCCGGTAAGAGGACTTCACCGAAAGATCGAATCGATTCTATCTTAATTTGTATCCTGAAATATTTTATATTGGTTTATTTTTGGTCTGATAAGGGATTGTTGTTTACAGTTTAAAATAGCAGATTAGTAATTAATTAATTTAAATTAGAATGCAGTAAAAAAACAATACTTTATTTGTATTTCTAAATAAGCTACGTTAGTTGA
**************************************************.((((((((..((..(((....)))....)).))).)))))...(((((.((((.....((((.(((((((.(((.((((((((.....(((((((.....))))))).......)))))))).))).))))))).)))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902009
testis
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
........................................AATGGGCCCGCTAACAGGA............................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
................TTTATTTCACTGGCAAGCTACAATA................................................................................................................................................................................................................. 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................TTCACTGGCAAGCTACAATAATGGGCC.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................TGGCAAGCTACAATAATGGGCCCGCCG..................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................ATGGGCCCGGTAAGAGGACTTCACC........................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTAATTAGAATGCAGAAAAAAAAAA....................................... 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................CACTGGCAAGCTACAATAATGGGCCC......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................TTCCACTGATAAGGGATTGTTGTT.................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 0 0 1 0
.........................................................................................TAATTTGTACACTGGAATATTTT.......................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................AGGTCTGATAAGGGA............................................................................................................ 15 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................TAATGGGCCCGCTAACAG................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTGTTGATCGGATAAGGGAT........................................................................................................... 20 3 14 0.21 3 0 2 0 0 0 0 0 1 0
..........................................................................................AATTTGTACACTGGAATATTTT.......................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................AAAAAAGCAGATTAGT............................................................................ 16 1 9 0.11 1 0 0 1 0 0 0 0 0 0
................................................................................ATTATATCTTAATTTGT......................................................................................................................................................... 17 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCTAATAGCAGATTAGT............................................................................ 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAATATAGCAGATTAGT............................................................................ 19 2 11 0.09 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATGGCAGATTAGTAA.......................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................AAATCGCAGATTAGT............................................................................ 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0
................AGTAGGTCACTGCCAAGCT....................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0
.......................................TAATGGGCCCGCTAACA.................................................................................................................................................................................................. 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................................GTAAGAGCACTTCACAGAG..................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1
................AGTTCTTCAGTGGCAAGCT....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.......................................TAATGGGCCCGCTAAC................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAAGGAAAAAGAATGTCATAAAGTGACCGTTCGATGTTATTACCCGGGCCATTCTCCTGAAGTGGCTTTCTAGCTTAGCTAAGATAGAATTAAACATAGGACTTTATAAAATATAACCAAATAAAAACCAGACTATTCCCTAACAACAAATGTCAAATTTTATCGTCTAATCATTAATTAATTAAATTTAATCTTACGTCATTTTTTTGTTATGAAATAAACATAAAGATTTATTCGATGCAATCAACT
**************************************************.((((((((..((..(((....)))....)).))).)))))...(((((.((((.....((((.(((((((.(((.((((((((.....(((((((.....))))))).......)))))))).))).))))))).)))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
...................................TGATATTACCCGGGCGATTGTC................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0
........GAAGGAGGTCATAAAGTGACC............................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0
.......AAAAGCATGTCATAAAGT................................................................................................................................................................................................................................. 18 1 3 0.33 1 0 1 0 0 0 0
.......................................ATTACCCGGGCGATTGTC................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0
........AAAGCATGTCATAAAGT................................................................................................................................................................................................................................. 17 1 4 0.25 1 0 0 0 1 0 0
........................................TTACCCGGGCGATTC................................................................................................................................................................................................... 15 1 4 0.25 1 1 0 0 0 0 0
........................................TTACCCGGGCGATTGTC................................................................................................................................................................................................. 17 2 10 0.20 2 2 0 0 0 0 0
.......................................ATCACCCGGGCCCTTCT.................................................................................................................................................................................................. 17 2 7 0.14 1 0 1 0 0 0 0
..........................................................................................................................................................................................................TGTTTTTGTTTTGAAATAATCAT......................... 23 3 7 0.14 1 0 0 0 0 1 0
...AGGAAGAGGACTGTCATAAA................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1
..........AGCATGTCATAAAGT................................................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 1 0 0
..AGGGAAAAAGAATGT......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:46 AM