ID:

dsi_29079

 Coordinate:

2r:5102919-5102982 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5102756_5102918_-]; CDS [2r_5102756_5102918_-]; CDS [2r_5102983_5103410_-]; exon [2r_5102983_5103410_-]; intron [2r_5102919_5102982_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
TGCGGCGGTCTGGGGCATCTGCGATGGAGTCTGGCTGGTTGTGGTCAATGGTGAGTGAAGCTCGGACTAAGGCTTGTCGCCAAGATTGGGTATTAAACTTTGCTATTTTTGCAGCTTTTTATGGCATTCTGTTTCCGAACCATCTGATTGCCGCTTATAGCAAC
**************************************************..((((...((((((.((..(((.....))).)).)))))).....))))(((.......))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................TTTGCTATTTTTCCAGCTTTTTGTGC........................................ 26 3 1 6.00 6 6 0 0 0 0 0 0 0
AGGGACGGTCTGGGGCATC................................................................................................................................................. 19 3 20 2.95 59 0 40 13 0 1 5 0 0
...................................................................................................TTGCTATTTTTCCAGCTTTTTGTGC........................................ 25 3 1 2.00 2 2 0 0 0 0 0 0 0
AGCGACGGTCGGGGGCATC................................................................................................................................................. 19 3 14 1.86 26 0 20 4 0 0 1 1 0
....................................................................................................TGCTATTTTTCCAGCTTTTTGTGC........................................ 24 3 2 1.50 3 3 0 0 0 0 0 0 0
.GCGACGGTCGGGGGCATC................................................................................................................................................. 18 2 4 1.00 4 0 2 2 0 0 0 0 0
..............................................................................................TAGCTTTGCTATTTTTCCAGCTTT.............................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................TGCTATTTTTCCAGCTTTTTGTGA........................................ 24 3 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................ATGGCATTCTGTTTCCGAACC....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................TTTAGCTTTGCTATTTTTCCAGCT................................................ 24 3 1 1.00 1 0 0 0 1 0 0 0 0
...GACGGTCTGGGGCATC................................................................................................................................................. 16 1 1 1.00 1 0 0 0 0 1 0 0 0
..GGACGGTCTGGGGCATCAGC.............................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0
...GACGGTCTGGGGCATCAGT.............................................................................................................................................. 19 3 12 0.33 4 0 3 1 0 0 0 0 0
.............................................................................................TTAGCTTTGCTATTTTTCCAGCT................................................ 23 3 3 0.33 1 0 0 0 1 0 0 0 0
TACGACGGTCGGGGGCATC................................................................................................................................................. 19 3 13 0.23 3 0 3 0 0 0 0 0 0
TAGGACGGTCTGGGGCATC................................................................................................................................................. 19 3 6 0.17 1 0 1 0 0 0 0 0 0
................................................TGTTGAGTAAAGCTCGGCC................................................................................................. 19 3 8 0.13 1 0 0 0 0 1 0 0 0
.GGGGCGGTCGGGGGCATC................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 1 0 0
..AGGCGGTCGGGGGCATC................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 1 0 0 0
.................................................GGTGAGCGAATCTCGGA.................................................................................................. 17 2 15 0.07 1 0 0 0 1 0 0 0 0
...............................................................GGTCCCAGGCTTGTCGCCA.................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..GGACGGTCTGGGGCATCA................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0
.....................CGATGTAGTATGGCT................................................................................................................................ 15 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACGCCGCCAGACCCCGTAGACGCTACCTCAGACCGACCAACACCAGTTACCACTCACTTCGAGCCTGATTCCGAACAGCGGTTCTAACCCATAATTTGAAACGATAAAAACGTCGAAAAATACCGTAAGACAAAGGCTTGGTAGACTAACGGCGAATATCGTTG
**************************************************..((((...((((((.((..(((.....))).)).)))))).....))))(((.......))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................................................................AGGCTTGGTAGACTAACGGCGAATAT..... 26 0 1 2.00 2 1 0 1 0
.....................................................................................................................................AGGCTTGGTAGACTAACGGCGAATATC.... 27 0 1 2.00 2 0 2 0 0
....................................................................................................................AAAATACCGTAAGACAAAGGCTTGGT...................... 26 0 1 1.00 1 1 0 0 0
.................................................................................................................CGAAAAATACCGTAAGACAAAGGCT.......................... 25 0 1 1.00 1 1 0 0 0
.................................................................................................................CGAAAAATACCGTAAGACAAAGGCTT......................... 26 0 1 1.00 1 1 0 0 0
....................................................................................................................................AAGGCTTGGTAGACTAACGGCGAATAT..... 27 0 1 1.00 1 0 1 0 0
.....................................................................................................................................AGGCTTGGTCGACTAACGGCGAATATCGT.. 29 1 1 1.00 1 0 1 0 0
.............CCGTAGTCGCTGCCTCAG..................................................................................................................................... 18 2 7 0.14 1 0 0 0 1
...GCGCCAGACCACGTAG................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 09:42 AM