ID:

dsi_29076

 Coordinate:

2r:20635807-20636046 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.6 -36.5 -36.5

Flybase annnotation

exon [2r_20636047_20636683_+]; CDS [2r_20636047_20636131_+]; exon [2r_20635621_20635806_+]; CDS [2r_20635621_20635806_+]; intron [2r_20635807_20636046_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGTCTTCTAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCAATGTTTATGTCAAGTTCGTGTTTCTATGGTGTAGGTGGCTCACACAAACTAATTTAACTCGAGTTGTAATTGTAATCAATCACATAGTTTAAGTCATTAGATATTTATTGCTATTTGATCGTCATTTGGCATTCACAAAACAAACTATTACTACATAATAACAACCCCATTTTATTTTTCGCACTGGTGTGGTTCATGCAACAACTAAAAACCTAAAACATATGACCGAACAGCGCCGAGGATCGGACTGAAGAGCCGGCCACCACCACCGATGGCTATGGGC
**************************************************((((((...)))))).....(((((.(((..((((...(((((.........................((((((...((((...(((((((((((....(((....)))......(((((..(((...)))..)))))..............(((((.....)))))......................))).))))))))..))))))))))....)))))...)))).))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae
....................................................................................................................................................................................................................................................................................ATATGACCGAACAGCGCCGAGGATCGGAC................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................CAAGGGATTGACCAATTC.................................................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGCTATTTGATCGTCATTTGGC......................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTGTTTGAGCGTCATTT............................................................................................................................................................ 17 2 20 1.85 37 0 0 4 0 13 15 0 0 0 5 0 0
.....................................................................................................................................................................................................................................................................................................CGAGGATCGGACTGAAGAGC........................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................TTATGTCAAGTTCGTGTTTCTATTGT............................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................CGCCGAGGATCGGACTGAAGAGCCGGC....................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATTCCGCCGAGGATCGGACTGAAG.............................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AGAGACGGCCACCACTACTGAT.......... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................ATATGACCGAACAGCGCCGAGGCTCGGAC................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CGCCGAGGATCGGACTGAAGAGC........................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......CTAAGTCCTGGAAGTCCTGGTT....................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AGGATCGGACTGAAGAGCCGGCC...................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................TGGTTCTACAAGGGATTGACCAAGT................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CCGAACAGCGCCGAGGATCGGAC................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ATGCCTGTTTGATCGTCATTT............................................................................................................................................................ 21 3 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 1
...........................................................................TGTTTCTATGGTGTGGGGTGCT................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GGTTCTATGGTGTAG......................................................................................................................................................................................................................................................... 15 1 11 0.45 5 0 0 1 0 0 0 0 0 0 0 4 0
.......................................................................................................................................................................CTGTTTGATCGTCATT............................................................................................................................................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................GTGGTTCTATGGTGTA.......................................................................................................................................................................................................................................................... 16 1 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................GGTTCTATGGTGTAGGA....................................................................................................................................................................................................................................................... 17 2 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCTGTTTGATCGTCATTT............................................................................................................................................................ 18 2 8 0.25 2 0 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ATTCCTGTTTGAGCGTCATTT............................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................GTTTGATCGTCATTT............................................................................................................................................................ 15 1 10 0.20 2 0 0 0 0 0 2 0 0 0 0 0 0
............................................................................GTTTCTATGGTCTAG......................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TTCTATGGTGTGGGTGACT................................................................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................TCCTGTTTGATCGTCATT............................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ATGCCTTTTTGATCGTCATTT............................................................................................................................................................ 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................GTTTCTATGGTGTAGTGG...................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................TGCCTGTTTGATCGTCATTT............................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TGTGGTTCTATGGTGTA.......................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GGTTCGATGGTGTAGTTGG..................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................AAACATATTACCGAA..................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
........TAGGTCCTGGAAGGCC............................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TGCGTGGTTCTATGGT............................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCTGTTTGATCGTCATT............................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTCAGAAGATTCAGGACCTTCAGGACCAAGATGTTCCCTAACTGGTTAAGCATTCGTTACAAATACAGTTCAAGCACAAAGATACCACATCCACCGAGTGTGTTTGATTAAATTGAGCTCAACATTAACATTAGTTAGTGTATCAAATTCAGTAATCTATAAATAACGATAAACTAGCAGTAAACCGTAAGTGTTTTGTTTGATAATGATGTATTATTGTTGGGGTAAAATAAAAAGCGTGACCACACCAAGTACGTTGTTGATTTTTGGATTTTGTATACTGGCTTGTCGCGGCTCCTAGCCTGACTTCTCGGCCGGTGGTGGTGGCTACCGATACCCG
**************************************************((((((...)))))).....(((((.(((..((((...(((((.........................((((((...((((...(((((((((((....(((....)))......(((((..(((...)))..)))))..............(((((.....)))))......................))).))))))))..))))))))))....)))))...)))).))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 M025
embryo
 SRR902009
testis
 M024
male body
........................................................................................................................................................................................................................................AAAAGCGTGACCACAGC........................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................TTCAGGACCAAGCGGTTC................................................................................................................................................................................................................................................................................................................ 18 2 4 1.00 4 0 0 2 0 1 0 1 0 0
.........................CCAAGCTGTTCCCTAA........................................................................................................................................................................................................................................................................................................... 16 1 3 0.67 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATGTTGGGATTTTGTATAC........................................................... 19 2 6 0.33 2 0 0 0 0 1 0 0 1 0
.......................................................................................................................................................................................................................ATTGTTGGGGGAGAATAA........................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................ATTTTGGGATTTGGTATAC........................................................... 19 2 7 0.14 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CGCGGGTCCTAGCTTGAC................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATTTTTGGAGTTGGTATAC........................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 1 0
...................TCAGGACCAAGCGGTTCTC.............................................................................................................................................................................................................................................................................................................. 19 3 18 0.11 2 0 0 0 1 0 0 0 0 1
.......................................................................................................................................................................................................................ATTGTTGGGGTACTATGAAA......................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
.CAAAAAGATTCAGGACCTT................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0
......................................................................................................................................................................................................................................................................ATGTTTGGAGTTTGTATA............................................................ 18 2 20 0.10 2 0 0 0 0 0 2 0 0 0
...............................................................................................................................................................................................TGATATGTTTGATGATGATGT................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CTTCTCGGCCGGTGGAGCAG.............. 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0
..................TTCAGGACCAAGCGGTT................................................................................................................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGGGATTTTGTATAC........................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CCGATAGTGGTGGATACCG....... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................ATGTTTGGATTTGGTATA............................................................ 18 2 17 0.06 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................GGCTCCCAGCCTGAGTTG.............................. 18 3 17 0.06 1 0 0 0 1 0 0 0 0 0
.................TTTCAGGACCAAGCGGTTC................................................................................................................................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 1 0 0 0 0 0 0
....................CAGGACCAAGCGGTTC................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..........TCAGGCCCTGCAGGATCA........................................................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................CTTAATCATTCGTTACAGA..................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20635757-20636096 + dsi_29076 GAGTCTTCTAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCAATGTTTA------T---GTC--A----AGTTCG------TGTTTC----TATGGTGTAGGTGGCT-------CACA-CAA--------ACTAATTTAACTCGAGTTGTA------ATTGTAATCAATCACATAGTTTAAGTCATTAGATATTTAT---------------------TGCTATTT-------------GATC--------GTCATTTGGCA------------------------------------------------TTCACAAAACAAA-----------CT--------A------------------------TTACTACATAA----TAACAACCC-CATTTTATTTTTCGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CACCA------------CCAC---CG------ATGGCTATGG-GC
droSec2 scaffold_23:31649-31988 + GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGCAATGTTTA------T---GTC--A----CGTTCG------TGTTTG----TATGGTGTAGGCGGCT-------CACA-CAA--------ACTAATTTAACTCGAGTTGTA------ATTGTAATCAATCACATAGTTTAAGTCATTAGATATTTAT---------------------AGCTTTTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCACAAAACAAA-----------CT--------A------------------------TTACTGCATAA----TAACAACCC-CATTTTATTTTTCGCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CACCA------------CCAC---CG------ATGGCTATGG-GC
dm3 chr2R:20151819-20152158 + GAGTCTTCCAAGTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCACTGTTTA------T---GTC--A----AGTTCG------TGTTTC----TATGGTGTAGGTGGCT-------CACA-CAA--------ACTAATGCAACTCGAGTTGTA------ATTGTAATCAATCACATATTTTAAGCCATTAGATATTTAA---------------------AGCTATTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCTCAAAACATA-----------CT--------A------------------------TTACTGCATAA----TAACAACCC-CATTTTATTTTTCCCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CCCCA------------CCAC---CG------ATGGCTATGG-GC
droEre2 scaffold_4845:21513655-21513990 + GAGTCCTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAATTCGTAAGCGCTGTTTA------T---TTC--A----ACTACG------TGTTTC----TGTGGTTTTGGTGGCT-------CACA-CGA--------GCCAATGC-GTTCGATTTGTA------ATTGTAACCAATCACTTACCCTAAGCCATTCGATATGAGT---------------------AGTT-ATT-------------GTTC--------GCCATTCCGCA------------------------------------------------TATTCAAAACATA-----------CT--------A------------------------CTACTGCATAA----TAACA--CA-TATTTTATTTTTCGCAC-TGGTGTGGC---------CA-TGCAACA-A---------------------------------------CTAAATA-CCT-AAAAACTAATG--ATCGAACAGCGCCGAGGACCGGACTGAAGT---GG------------CGGC---CACCA------------CCAC---GG------ATGGCTATGG-CC
droYak3 2R:20118132-20118445 + GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCACTGTTCA------T---TTC--A----ACTACGTGTG-GTG-TTC----TGTGGTGTCGGTAG--------------------------------AAGCTCGACTTGTA------ATTGTAATCACTCACTTAGTTTAAGCCATCAGATATTTGT---------------------AGTTGT---------------------------------TTGCA------------------------------------------------TTTTCAA-ACATA-----------CT--------A------------------------TTACTGCTTAA----TAACA-----CATTTTATTTTTCGCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAA--CCT-ATAAACTTACG--ATCGAACAGCGCCGAGGAGCGGACTGAAGT---GC------------CGGCGGCCACCA------------CCAG---CG------ATGGCTATGG-CC
droEug1 scf7180000409464:510849-511175 + GAGTCGTCCAAGTCGTGGAAGTCCTGGTTCTATAAGGGACTGACCAACTCGTAAGCACTGTTTA------G---TTT--A----GCTGCG------TGTTTT----TCTGGTGTCGGTCGCT-------AA-----A--------ACTAATCTAATTCGACGTGTA------A------CTAATCACTTGCTTTTAGT--------------CCTAGTGCTG-TCACTCGATT-A---TTT-------------GTTC--------TCCATTTCGCA------------------------------------------------TTCACAGT-----------TTTA-AT--------T------------------------TTACCCGATAA----TAACGATAC-CATTTTATTTTCCGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CAATTAA-TCG-TAACAC-------------TAGTGCCGAGGATCGGACAGAAGA---GC------------CGTC---GACGA------------CCAC---CGATAGTGATGGCTACGG-CC
droBia1 scf7180000302143:697092-697426 + GAGTCCTCGAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGCAATGTTTT------T---CTT--A----CCTGTG------TGTTCT----TCTGGTGTCGTGTCCT----------A-TAA--------CCTAATCAACTTCCACTTGTA------ATTGTAATTAATAGCTTCTT-GTAGT--------------TCTTATGTTG-TCTCTCGCTT-G---TTT-------------GTCC--------GCCACATCGCA------------------------------------------------CTCTCATTT----------TTTA-TT--------T------------------------TTACCTAATAA----TAATGAGCA-CATTT---TTTCCGCCC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAC--TCG-AATAACTAATG--ACCAAACAGCGACGAGGACCGAACCGAAGT---GC------------CGGT---GACAA------------CCAC---CG------ATGGTTATGG-CC
droTak1 scf7180000415722:624596-624928 - GAGTCGTCCAAGTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGAACAGCATT------T---CTT--A----GCTACG------TGTTTT----TCTGGTGTCGGTTGCT-------ATAA-CTA-----ATTACTAATCGAATTCAACTTGTA------ACCGTAATTAATCCCTTGCTTTTAGTC------------------------------ACTT-G---TTT-------------GTCT--------GCCATAACGCA------------------------------------------------TTTTCAT------TT--GTTTTAATT--------T------------------------TTACCCGATAA----TAACGAGCA-CATTTTATTTTCCGCCC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAA--TCG-AATAACTAATG--ATCGAACAGCGCTGAGGATCGAACAGAAGA---GC------------CGGT---GACAA------------GCGC---CG------ATGGTTATGG-CC
droEle1 scf7180000491214:4902227-4902579 - GAGTCCTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAACTCGTAAGCACTGTTTA------G---TTTATA----GCTACG------TGTTTT----TCTGGTGTCGGTTGCT-------CTT-----------------ATCTAATTCAACTTGTAATTGTAATTGT----AATCACTTGCTTTTAGT--------------CCTTATGCTG-TCACTCGTGT-G---TTT-------------GTTC--------ACCATTTCGCA------------------------------------------------TACTCAT------AT--ATTTTA-AT--------T------------------------TTACCCGATAA----TAACAAACA-CATTTTATTTTCTGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CCAAAAA-TCG-AATAAATTATG--ATCAAACAGCGCTCAAGATCGGACGGAAGT---GC------------CGAT---GACAAGCAACGATACAGATTC---AG------ATGGTTATGG-CC
droRho1 scf7180000777386:201673-201979 + GAGTCATCCAAGTCCTGGAAGTCATGGTTCTACAAAGGACTTACCAACTCGTAAGCAATGTTTT----TAG---TTTAAA----GCTACGTGTACGTGTTTT----TCTGGTGTCGGTTGCT-------CA-----------------------------ATTGTA------AATGTTATCA----C--------------------------------------------TT-GTT-TTT-------------G---------------TTTCGCT------------------------------------------------TTTTCAT------GT--ATTTTA-TT--------T------------------------TTACCCTATAATACATAACTAACA-CATTTTATTTTATGCAC-TGGTGTGGT--------TAA-TGCAACA-A---------------------------------------CTAAATA-TCG-AATAACTTATT--ACCGAACAGAGCTGAAGATCGGAAGGAAAT---GC------------CGGT---GACAA------------CCAC---TGATAAGGATGGTTATGG-AC
droFic1 scf7180000453858:1874878-1875210 + GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAACTCGTAAGCGCTGTTCA------G---TTT--A----TACTCGTATTCTTGTGTT----TTTGGTGCTGGTTGTC-------CTA-----------------ACCCAAACCACTTTGGA------ATTGTGTTGAATCACTTGCTTGTAGT--------------CCTTATGCTG-TCACTCGTTT-A---TTT-------------GTCC--------GCCATTTCGCA------------------------------------------------TTCACATT-----------TTTA--T--------T------------------------TTAC-CGATAA----TAACGA-----ATTTTATTTTCTGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAA--TCG-AATATCTTATG--AACGAACAGAGGAGAGGATAAAACAGAAGT---GC------------CGCC---TACCT------------CCAC---CG------ATGGTTATGG-CC
droKik1 scf7180000302277:1054899-1055215 - GAGTCTTCAAAGTCCTGGAAGTCGTGGTTCTATCGGGGACTAACCAACTCGTAAGCACCTTTCA------G---TTGATA----GCTGCT------TGTTCT----CCTGGTGACGGTTGCA-------CTAA-TCA--------GTTAAATC-ATTAAATTAACA------ATTGCTA--------------TTAGT--------------TTCTATGTTTGTTACATATTTAGTTTT--------GTGTTTTGCTT--------ACCA-------------------------------------------------------------------------------TT--------T------------------------TTACTTTATAA----TAACGAACT-CATTTTATTCTCTGCAC-TGGTGTGGT--------TCA-TTCAACAAA---------------------------------------CTAAAATATCGCAAAAACTAATA--ATTGCACAGGTCTGAGGAACGAACAGGAGA---TA------------CAGC---------------------AAC---GG------ATGGCGACAA-TC
droAna3 scaffold_13266:14257171-14257450 - GAGTCCTCCAAGTCCTGGAAGTCGTGGTTCTATCGAGGATTGACCAACTCGTAAGCAAAAGATTCACGTAG----------------------------TTC----AGTGGTA---GTTG--TGCTTT-----------------------------A--------------------------------------AT--------------T--TTTGGTG-TTACTCGCCT-A---TTTGTACCT---------CC--------ATAACATTCTG------------------------------------------------TGTTCAT------AC--AGTTTA-TT--------A------------------------TT--CAAATAA----TAACCAAATTCATTTTATTTTCTGCAC-TGGTGTGGTGGT-T---TGC-CAAATCA-A---------------------------------------CTCAAAT-ATG-ACAAACTAATA--TCCATACAGAGCCGAGGAAAAGTCTCCCGT---GG------------AGGA---CCAAA------------CCAA---C--------------------
droBip1 scf7180000396759:1874441-1874726 + GAGTCCTCCAAGTCGTGGAAGTCATGGTTCTATCGAGGATTGACCAACTCGTAAGCAAAAGTTT----------------------TACG------TCATTA----AGTGGTA---GTTG-TGGCT---TA-----------------------------------------------------------------AT--------------CCT--TGATG-TTACTCGCCT-A---ATTGTGCTT---------TC--------ATAACATTCTG------------------------------------------------TGTTCAT------AC--ACTTTA-TTATT-----C------------------------GAAACCGATAA----TAACCAAATTCATTTTGTTTTCTGCAC-TGGTGTGGTGGTTTTGCCAA-TTCAAC-------------------------------------------TCAAAA-ATA-CCAAACTAATA--TGCATACAGAGCCGAGGATAAGACTCCCGT---TG------------AGGA---CCAAA------------CCAA---C--------------------
dp5 3:18522289-18522638 - GAGTCCTCCAAGTCGTGGAAGTCGTGGTTCTATCGCGGACTGACCAATTCGTATGTACTATTCA------G---TAAAT-----CCTAAG------TGTTTTCCC-TGTGGTG---GTTGGTTGCTTT-----------------------------CCATTTG--------ATTGT--------------------------------------------G-TTCTTCACTA-G---TTCGTGCTCGT-----GCTC--------GTGATCTTCCA------------------------------------------------TTTTCAT------TTAAACTTTA-TT--T-----T------------------------AAACACGATAA---ATAATCAAGT-TATTTTACTTTCTGCAC-TGGTGTGGT--------ACA-TTCAACA-ATAAACAAAAAAAAAAAAACAACATCCGAAAAACCAAATACTAAAAC-C-----------------CTACACAGCGCAGAGGATCGGACAGAAAT---CCCAGCATCCG---------------GGGAGCAGACAACTAC---AG------AGTTCTGGGC-TC
droPer2 scaffold_34:470420-470767 - dpe_1501 GAGTCCTCCAAGTCGTGGAAGTCGTGGTTCTATCGTGGACTGACCAATTCGTATGTACTATTCA------G---TAAAT-----CCTAAG------TGTTTTCCC-TGTGGTG---GTTGGTTGCTTT-----------------------------CCATTTG--------ATTGT--------------------------------------------G-TTCTTCACTA-G---TTCGTGCTCGT-----GCTC--------GTGATCTTCCA------------------------------------------------TTTTCAT------TTAAACTTTA-TT--T-----T------------------------AAACACGATAA---ATAATCAAGT-TATTTTACTTTCTGCAC-TGGTGTGGT--------TCA-TTCAACA-ATAAA--AAAAAAAAAAAACTACAACCAAAAAACCAAATACTAAAAC-C-----------------CTACACAGCGCAGAGGATCGGACAGAAAT---CCCAGCATCCG---------------GGGAGCAGACAACTAC---AG------AGTTCTGGGC-TC
droWil2 scf2_1100000004558:1094214-1094590 + GAGTCATCCAAGTCATGGAAGTCGTGGTTCTATCGTGGATTATCTAATTCGTATGTACTATTTGACTAAAGTTCCTA--TGTTATGTGTT------TGTTCG--TTTTTGGTGTTGGTTCTT-GCATT--CCATTGACTGCCATTGCTAAATGCATTTTACCTGTA------------------------------GA--------------TCCAAGATCT-----------------------------------ATTGAAGCTTTAGCATTATA------------------------------------------------TAATCCA------GC--ATTTTG-TAATTAATTTTGTATATACTTTAATTATAAAAAGAACAAAAAGTAA----T--CTCACA-AATTTTATTTTCCACACGTGGTTTTGG-------TTAA-CTCATC------------------------------------------------------------TTACGAACTCTCTCAGAGGAGAGGAAACAACTAAGGAAGGATCTGCTTTTAATACGGA---GACAA------------CTAC---CGATAATAATAATTGGGG-TT
droVir3 scaffold_12875:7237402-7237469 + GGCTCCTCGAAGTCCTGGAAGAATTGGCTCTATCGCGGACTCAGCAATTCGTATGTATCGTAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-TC
droMoj3 scaffold_6496:25984948-25985289 + GGGTCCTCTAAGTCGTGGAAGTCGTGGTTCTATCGAGGACTCACCAACTCGTATGTATCGCTAA--TGTAG---TTT---GCTAACTGTT------TGTTCT---GCTTGGTGTTGGCTC---GATGCTCATG-CGA--------T----GATCATGCGAT----------------GATTCATTG-----------------------------------------------------------------------C--------CTAGCATTTGGTGTTCATTGTAGTTGTATTGATGTCATATTGTTGTTGTAATTGTAATATACACAGTACCCA-----------AT--------A------------------------TAACTGTATAT------ACACTCT-CATTC---TCTCTGCTT-TGGCATATT--------TCAATGGCAGC-A---------------------------------------CTGGGGA-GC---AACA-----C--ACCGAGGAGCGGGAAGGCATAGAGTCTAAT---GC------------CT-T---GGGTT------------TCACTGATG------TGGTTTATGGTGT
droGri2 scaffold_15245:779811-779873 + GGCTCCTCGAAGTCATGGAAGTCATGGTTCTATCGCGGATTAACCAATTCGTATGTATCGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAGTCTTCTAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCAATGTTTA------T---GTC--A----AGTTCG------TGTTTC----TATGGTGTAGGTGGCT-------CACA-CAA--------ACTAATTTAACTCGAGTTGTA------ATTGTAATCAATCACATAGTTTAAGTCATTAGATATTTAT---------------------TGCTATTT-------------GATC--------GTCATTTGGCA------------------------------------------------TTCACAAAACAAA-----------CT--------A------------------------TTACTACATAA----TAACAACCC-CATTTTATTTTTCGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CACCA------------CCAC---CG------ATGGCTATGG-GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATG--ACCGAACAGCGCCGAGGATCGGAC...........................................................................2912.00200200000000000000
................................CAAGGGATTGACCAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210100000000000000
.........................................................................................................................................................................................................................................TGCTATTT-------------GATC--------GTCATTTGGC........................................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGATCGGACTGAAGA---GC------------....................................................2011.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAGGATCGGACTGAAGA---GC------------CGGC---.............................................2711.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAGGATCGGACTGAAGA---GC------------....................................................2311.00100000001000000000
.......CTAAGTCCTGGAAGTCCTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCGGACTGAAGA---GC------------CGGC---C............................................2311.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAACAGCGCCGAGGATCGGAC...........................................................................2311.00100100000000000000
droSec2
GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGCAATGTTTA------T---GTC--A----CGTTCG------TGTTTG----TATGGTGTAGGCGGCT-------CACA-CAA--------ACTAATTTAACTCGAGTTGTA------ATTGTAATCAATCACATAGTTTAAGTCATTAGATATTTAT---------------------AGCTTTTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCACAAAACAAA-----------CT--------A------------------------TTACTGCATAA----TAACAACCC-CATTTTATTTTTCGCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CACCA------------CCAC---CG------ATGGCTATGG-GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GAGTCTTCCAAGTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCACTGTTTA------T---GTC--A----AGTTCG------TGTTTC----TATGGTGTAGGTGGCT-------CACA-CAA--------ACTAATGCAACTCGAGTTGTA------ATTGTAATCAATCACATATTTTAAGCCATTAGATATTTAA---------------------AGCTATTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCTCAAAACATA-----------CT--------A------------------------TTACTGCATAA----TAACAACCC-CATTTTATTTTTCCCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACCGAACAGCGCCGAGGATCGGACTGAAGA---GC------------CGGC---CCCCA------------CCAC---CG------ATGGCTATGG-GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................TGGTGTAGGTGGCT-------CACA-CAA--------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TTACTGCATAA----TAACAACCC-CATTTT.............................................................................................................................................................................................................2614.0040000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATGCAACTCGAGTTGTA------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGGAAGTCCTGGTTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................A----AGTTCG------TGTTTC----TATGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................TTC----TATGGTGTAGGTGGCT-------CACA-CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000
..................................................................................................................................................................................................................AA---------------------AGCTATTT-------------GATC--------GTCATTTCGC........................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGAGTTGTA------ATTGTAATCAATCACATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGCATAA----TAACAACCC-CATTTTATT..........................................................................................................................................................................................................2512.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TCAAAACATA-----------CT--------A------------------------TTACTGCA....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................C--A----AGTTCG------TGTTTC----TATGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................CAA--------ACTAATGCAACTCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................ACA-CAA--------ACTAATGCAACTCGAGTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CATTTCGCA------------------------------------------------TTCTCAAAACATA-----------CT--------.....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ACTCGAGTTGTA------ATTGTAATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTCATTTCGCA------------------------------------------------TTCTCAAAACATA-----------CT--------A------------------------............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATG--ACCGAACAGCGC.......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................GGTTCTACAAGGGATTGACCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA---GC------------CGGC---CCCCA------------CCAC---C....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTGGTTCTACAAGGGATTGACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGAGGATCGGACTGAAGA---GC------------C...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGATCGGACTGAAGA---GC------------CGGC---C............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGATCGGACTGAAGA---GC------------CGGC---.............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......TCCAAGTCATGGAAGTCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................TGGTGTAGGTGGCT-------CACA-CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCGGACTGAAGA---GC------------CGGC---C............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGAGGATCGGACTGAAGA---GC------------CG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................................................................ATGGTGTAGGTGGCT-------CACA-CAA--------ACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................ATTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCTC..................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................TA------T---GTC--A----AGTTCG------TGTTTC----TATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................TCCTGGTTCTACAAGGGATTGACCAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGAAGA---GC------------CGGC---CCCCA------------............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................................................................................................................................................TATTT-------------GATC--------GTCATTTCGCA------------------------------------------------TTCTCA.................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................TTCG------TGTTTC----TATGGTGTAGGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................TATGGTGTAGGTGGCT-------CACA-CAA--------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................CG------TGTTTC----TATGGTGTAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................C--A----AGTTCG------TGTTTC----TATGGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG--ACCGAACAGCGCCGAGGATCGGACT..........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CT--------A------------------------TTACTGCATAA----TAACAACCC-CAT................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TTA------T---GTC--A----AGTTCG------TGTTTC----T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TACAAGGGATTGACCAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCGAGGATCGGACT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................AGGGATTGACCAATTCGTAAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TC----TATGGTGTAGGTGGCT-------CACA-CAA--------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------CTAAAAA-CCT--AAAACATATG--ACC................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TATTTAA---------------------AGCTATTT-------------GATC--------GTCATT............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGCACTGTTTA------T---GTC--A----AGTTCG------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCTACAAGGGATTGACCAATTCGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ATGGTGTAGGTGGCT-------CACA-C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTGGTTCTACAAGGGATTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GCT-------CACA-CAA--------ACTAATGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................G------TGTTTC----TATGGTGTAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--ACCGAACAGCGCCGAGGATCGGACTATC.......................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATG--ACCGAACAGCGCCGAGGA.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................................................ATTTAA---------------------AGCTATTT-------------GATC--------GTCATTCT..........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGGTGTAGGTGGCT-------CACA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TATGGTGTAGGTGGCT-------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................C-TGGTGTGGT--------CCA-TGCAACA-....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCGGACTGAAGA---GC------------ATC.................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAGTCCTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAATTCGTAAGCGCTGTTTA------T---TTC--A----ACTACG------TGTTTC----TGTGGTTTTGGTGGCT-------CACA-CGA--------GCCAATGC-GTTCGATTTGTA------ATTGTAACCAATCACTTACCCTAAGCCATTCGATATGAGT---------------------AGTT-ATT-------------GTTC--------GCCATTCCGCA------------------------------------------------TATTCAAAACATA-----------CT--------A------------------------CTACTGCATAA----TAACA--CA-TATTTTATTTTTCGCAC-TGGTGTGGC---------CA-TGCAACA-A---------------------------------------CTAAATA-CCT-AAAAACTAATG--ATCGAACAGCGCCGAGGACCGGACTGAAGT---GG------------CGGC---CACCA------------CCAC---GG------ATGGCTATGG-CCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................CTACAAGGGACTGACCAATTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....................TCCTGGTTCTACAAGGGACTGACCAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.......................................CTGACCAATTCGTAAGCGCTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
droYak3
GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCGTAAGCACTGTTCA------T---TTC--A----ACTACGTGTG-GTG-TTC----TGTGGTGTCGGTAG--------------------------------AAGCTCGACTTGTA------ATTGTAATCACTCACTTAGTTTAAGCCATCAGATATTTGT---------------------AGTTGT---------------------------------TTGCA------------------------------------------------TTTTCAA-ACATA-----------CT--------A------------------------TTACTGCTTAA----TAACA-----CATTTTATTTTTCGCAC-TGGTGTGGT--------CCA-TGCAACA-A---------------------------------------CTAAAA--CCT-ATAAACTTACG--ATCGAACAGCGCCGAGGAGCGGACTGAAGT---GC------------CGGCGGCCACCA------------CCAG---CG------ATGGCTATGG-CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................ATCAGATATTTGT---------------------AGTTGT---------------------------------............................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGAAGT---GC------------CGGCGGC.............................................1911.00100000010000
droEug1
GAGTCGTCCAAGTCGTGGAAGTCCTGGTTCTATAAGGGACTGACCAACTCGTAAGCACTGTTTA------G---TTT--A----GCTGCG------TGTTTT----TCTGGTGTCGGTCGCT-------AA-----A--------ACTAATCTAATTCGACGTGTA------A------CTAATCACTTGCTTTTAGT--------------CCTAGTGCTG-TCACTCGATT-A---TTT-------------GTTC--------TCCATTTCGCA------------------------------------------------TTCACAGT-----------TTTA-AT--------T------------------------TTACCCGATAA----TAACGATAC-CATTTTATTTTCCGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CAATTAA-TCG-TAACAC-------------TAGTGCCGAGGATCGGACAGAAGA---GC------------CGTC---GACGA------------CCAC---CGATAGTGATGGCTACGG-CCSizeHit CountTotal NormTotal
No Reads
droBia1
GAGTCCTCGAAGTCCTGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGCAATGTTTT------T---CTT--A----CCTGTG------TGTTCT----TCTGGTGTCGTGTCCT----------A-TAA--------CCTAATCAACTTCCACTTGTA------ATTGTAATTAATAGCTTCTT-GTAGT--------------TCTTATGTTG-TCTCTCGCTT-G---TTT-------------GTCC--------GCCACATCGCA------------------------------------------------CTCTCATTT----------TTTA-TT--------T------------------------TTACCTAATAA----TAATGAGCA-CATTT---TTTCCGCCC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAC--TCG-AATAACTAATG--ACCAAACAGCGACGAGGACCGAACCGAAGT---GC------------CGGT---GACAA------------CCAC---CG------ATGGTTATGG-CCSizeHit CountTotal NormTotal
No Reads
droTak1
GAGTCGTCCAAGTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAACTCGTAAGAACAGCATT------T---CTT--A----GCTACG------TGTTTT----TCTGGTGTCGGTTGCT-------ATAA-CTA-----ATTACTAATCGAATTCAACTTGTA------ACCGTAATTAATCCCTTGCTTTTAGTC------------------------------ACTT-G---TTT-------------GTCT--------GCCATAACGCA------------------------------------------------TTTTCAT------TT--GTTTTAATT--------T------------------------TTACCCGATAA----TAACGAGCA-CATTTTATTTTCCGCCC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAA--TCG-AATAACTAATG--ATCGAACAGCGCTGAGGATCGAACAGAAGA---GC------------CGGT---GACAA------------GCGC---CG------ATGGTTATGG-CCSizeHit CountTotal NormTotal
No Reads
droEle1
GAGTCCTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAACTCGTAAGCACTGTTTA------G---TTTATA----GCTACG------TGTTTT----TCTGGTGTCGGTTGCT-------CTT-----------------ATCTAATTCAACTTGTAATTGTAATTGT----AATCACTTGCTTTTAGT--------------CCTTATGCTG-TCACTCGTGT-G---TTT-------------GTTC--------ACCATTTCGCA------------------------------------------------TACTCAT------AT--ATTTTA-AT--------T------------------------TTACCCGATAA----TAACAAACA-CATTTTATTTTCTGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CCAAAAA-TCG-AATAAATTATG--ATCAAACAGCGCTCAAGATCGGACGGAAGT---GC------------CGAT---GACAAGCAACGATACAGATTC---AG------ATGGTTATGG-CCSizeHit CountTotal NormTotal
No Reads
droRho1
GAGTCATCCAAGTCCTGGAAGTCATGGTTCTACAAAGGACTTACCAACTCGTAAGCAATGTTTT----TAG---TTTAAA----GCTACGTGTACGTGTTTT----TCTGGTGTCGGTTGCT-------CA-----------------------------ATTGTA------AATGTTATCA----C--------------------------------------------TT-GTT-TTT-------------G---------------TTTCGCT------------------------------------------------TTTTCAT------GT--ATTTTA-TT--------T------------------------TTACCCTATAATACATAACTAACA-CATTTTATTTTATGCAC-TGGTGTGGT--------TAA-TGCAACA-A---------------------------------------CTAAATA-TCG-AATAACTTATT--ACCGAACAGAGCTGAAGATCGGAAGGAAAT---GC------------CGGT---GACAA------------CCAC---TGATAAGGATGGTTATGG-ACSizeHit CountTotal NormTotal
No Reads
droFic1
GAGTCGTCCAAGTCCTGGAAGTCCTGGTTCTACAAGGGACTGACCAACTCGTAAGCGCTGTTCA------G---TTT--A----TACTCGTATTCTTGTGTT----TTTGGTGCTGGTTGTC-------CTA-----------------ACCCAAACCACTTTGGA------ATTGTGTTGAATCACTTGCTTGTAGT--------------CCTTATGCTG-TCACTCGTTT-A---TTT-------------GTCC--------GCCATTTCGCA------------------------------------------------TTCACATT-----------TTTA--T--------T------------------------TTAC-CGATAA----TAACGA-----ATTTTATTTTCTGCAC-TGGTGTGGT--------TCA-TGCAACA-A---------------------------------------CTAAAA--TCG-AATATCTTATG--AACGAACAGAGGAGAGGATAAAACAGAAGT---GC------------CGCC---TACCT------------CCAC---CG------ATGGTTATGG-CCSizeHit CountTotal NormTotal
No Reads
droKik1
GAGTCTTCAAAGTCCTGGAAGTCGTGGTTCTATCGGGGACTAACCAACTCGTAAGCACCTTTCA------G---TTGATA----GCTGCT------TGTTCT----CCTGGTGACGGTTGCA-------CTAA-TCA--------GTTAAATC-ATTAAATTAACA------ATTGCTA--------------TTAGT--------------TTCTATGTTTGTTACATATTTAGTTTT--------GTGTTTTGCTT--------ACCA-------------------------------------------------------------------------------TT--------T------------------------TTACTTTATAA----TAACGAACT-CATTTTATTCTCTGCAC-TGGTGTGGT--------TCA-TTCAACAAA---------------------------------------CTAAAATATCGCAAAAACTAATA--ATTGCACAGGTCTGAGGAACGAACAGGAGA---TA------------CAGC---------------------AAC---GG------ATGGCGACAA-TCSizeHit CountTotal NormTotal
No Reads
droAna3
GAGTCCTCCAAGTCCTGGAAGTCGTGGTTCTATCGAGGATTGACCAACTCGTAAGCAAAAGATTCACGTAG----------------------------TTC----AGTGGTA---GTTG--TGCTTT-----------------------------A--------------------------------------AT--------------T--TTTGGTG-TTACTCGCCT-A---TTTGTACCT---------CC--------ATAACATTCTG------------------------------------------------TGTTCAT------AC--AGTTTA-TT--------A------------------------TT--CAAATAA----TAACCAAATTCATTTTATTTTCTGCAC-TGGTGTGGTGGT-T---TGC-CAAATCA-A---------------------------------------CTCAAAT-ATG-ACAAACTAATA--TCCATACAGAGCCGAGGAAAAGTCTCCCGT---GG------------AGGA---CCAAA------------CCAA---C--------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..GTCCTCCAAGTCCTGGAAGTCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003000003
..............................................................................................................................................................................................................................................................................................................................................................T--------A------------------------TT--CAAATAA----TAACCAAATT...................................................................................................................................................................................................................2111.001010000
.........................GGTTCTATCGAGGATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droBip1
GAGTCCTCCAAGTCGTGGAAGTCATGGTTCTATCGAGGATTGACCAACTCGTAAGCAAAAGTTT----------------------TACG------TCATTA----AGTGGTA---GTTG-TGGCT---TA-----------------------------------------------------------------AT--------------CCT--TGATG-TTACTCGCCT-A---ATTGTGCTT---------TC--------ATAACATTCTG------------------------------------------------TGTTCAT------AC--ACTTTA-TTATT-----C------------------------GAAACCGATAA----TAACCAAATTCATTTTGTTTTCTGCAC-TGGTGTGGTGGTTTTGCCAA-TTCAAC-------------------------------------------TCAAAA-ATA-CCAAACTAATA--TGCATACAGAGCCGAGGATAAGACTCCCGT---TG------------AGGA---CCAAA------------CCAA---C--------------------SizeHit CountTotal NormTotal
No Reads
dp5
GAGTCCTCCAAGTCGTGGAAGTCGTGGTTCTATCGCGGACTGACCAATTCGTATGTACTATTCA------G---TAAAT-----CCTAAG------TGTTTTCCC-TGTGGTG---GTTGGTTGCTTT-----------------------------CCATTTG--------ATTGT--------------------------------------------G-TTCTTCACTA-G---TTCGTGCTCGT-----GCTC--------GTGATCTTCCA------------------------------------------------TTTTCAT------TTAAACTTTA-TT--T-----T------------------------AAACACGATAA---ATAATCAAGT-TATTTTACTTTCTGCAC-TGGTGTGGT--------ACA-TTCAACA-ATAAACAAAAAAAAAAAAACAACATCCGAAAAACCAAATACTAAAAC-C-----------------CTACACAGCGCAGAGGATCGGACAGAAAT---CCCAGCATCCG---------------GGGAGCAGACAACTAC---AG------AGTTCTGGGC-TCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAAAC-C-----------------CTACACAGCGCAGAGG..................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................CTCGT-----GCTC--------GTGATCTTCCA------------------------------------------------TTT....................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GAGTCCTCCAAGTCGTGGAAGTCGTGGTTCTATCGTGGACTGACCAATTCGTATGTACTATTCA------G---TAAAT-----CCTAAG------TGTTTTCCC-TGTGGTG---GTTGGTTGCTTT-----------------------------CCATTTG--------ATTGT--------------------------------------------G-TTCTTCACTA-G---TTCGTGCTCGT-----GCTC--------GTGATCTTCCA------------------------------------------------TTTTCAT------TTAAACTTTA-TT--T-----T------------------------AAACACGATAA---ATAATCAAGT-TATTTTACTTTCTGCAC-TGGTGTGGT--------TCA-TTCAACA-ATAAA--AAAAAAAAAAAACTACAACCAAAAAACCAAATACTAAAAC-C-----------------CTACACAGCGCAGAGGATCGGACAGAAAT---CCCAGCATCCG---------------GGGAGCAGACAACTAC---AG------AGTTCTGGGC-TCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGAGGATCGGACAGAAAT---CCCAGC............................................................2814.004400000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCGGACAGAAAT---CCCAGCATC.........................................................2611.001000001
.................................................................................................................................................................................................................................................GTGCTCGT-----GCTC--------GTGATCTTCC........................................................................................................................................................................................................................................................................................................................................................2211.001001000
................GGAAGTCGTGGTTCTATCGTGGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droWil2
GAGTCATCCAAGTCATGGAAGTCGTGGTTCTATCGTGGATTATCTAATTCGTATGTACTATTTGACTAAAGTTCCTA--TGTTATGTGTT------TGTTCG--TTTTTGGTGTTGGTTCTT-GCATT--CCATTGACTGCCATTGCTAAATGCATTTTACCTGTA------------------------------GA--------------TCCAAGATCT-----------------------------------ATTGAAGCTTTAGCATTATA------------------------------------------------TAATCCA------GC--ATTTTG-TAATTAATTTTGTATATACTTTAATTATAAAAAGAACAAAAAGTAA----T--CTCACA-AATTTTATTTTCCACACGTGGTTTTGG-------TTAA-CTCATC------------------------------------------------------------TTACGAACTCTCTCAGAGGAGAGGAAACAACTAAGGAAGGATCTGCTTTTAATACGGA---GACAA------------CTAC---CGATAATAATAATTGGGG-TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTAAGGAAGGATCT..............................................................1811.00100001
droVir3
GGCTCCTCGAAGTCCTGGAAGAATTGGCTCTATCGCGGACTCAGCAATTCGTATGTATCGTAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-TCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........GTCCTGGAAGAATTGGCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
......................ATTGGCTCTATCGCGGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GGGTCCTCTAAGTCGTGGAAGTCGTGGTTCTATCGAGGACTCACCAACTCGTATGTATCGCTAA--TGTAG---TTT---GCTAACTGTT------TGTTCT---GCTTGGTGTTGGCTC---GATGCTCATG-CGA--------T----GATCATGCGAT----------------GATTCATTG-----------------------------------------------------------------------C--------CTAGCATTTGGTGTTCATTGTAGTTGTATTGATGTCATATTGTTGTTGTAATTGTAATATACACAGTACCCA-----------AT--------A------------------------TAACTGTATAT------ACACTCT-CATTC---TCTCTGCTT-TGGCATATT--------TCAATGGCAGC-A---------------------------------------CTGGGGA-GC---AACA-----C--ACCGAGGAGCGGGAAGGCATAGAGTCTAAT---GC------------CT-T---GGGTT------------TCACTGATG------TGGTTTATGGTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAT---GC------------CT-T---GGGTT------------TCA.........................1911.001100000
.....................TCGTGGTTCTATCGAGGACTCACCAACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................TGCGAT----------------GATTCATTG-----------------------------------------------------------------------C--------CTAGC.............................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------CTGGGGA-GC---AACA-----C--ACC................................................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-----C--ACCGAGGAGCGGGAAGGC.................................................................................2311.001100000
droGri2
GGCTCCTCGAAGTCATGGAAGTCATGGTTCTATCGCGGATTAACCAATTCGTATGTATCGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................ATGGTTCTATCGCGGATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
.....................TCATGGTTCTATCGCGGATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
...............TGGAAGTCATGGTTCTATCGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
...........GTCATGGAAGTCATGGTTCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101

Generated: 05/19/2015 at 01:36 PM