ID:

dsi_29070

 Coordinate:

3r:4572957-4573254 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.8 -48.8 -48.8

Flybase annnotation

CDS [3r_4572753_4572956_-]; exon [3r_4572634_4572956_-]; CDS [3r_4573255_4573401_-]; exon [3r_4573255_4573401_-]; intron [3r_4572957_4573254_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCTGGTCAACTGCGTGGTGAGCGTCTACTTGAGAGCGCGGGAGAACAAGGTAACGCGGATGGAGACCTATAAATATATTCCAATGTTTCGTGACTAAAAGTGGCGGAGAAAAGGTCGCCCTAACGGATTCGTTTCATCAGCTTCCCAGAACGACAGCTCGGAGCCAAAAATACATTCACCACCTTTTCATTTGTGTCGTCCTTAATTTTTCAATTTTCCTAATCTCGTTATGTTGTCTACTACATTGCCTTGTTCATGAATGCTTTATGATAGATTTCATCCGCATGCTACTTTCGCCCTTCCGTCAGTAAAGAGTTTACCTAACATCAACGCTTTCACATCGGCAGGTGAGCTTCAAGACGGAACTTCTGGACGAGATCCGCTTCATTTTACAATG
**************************************************.....((((((((((......((((((......))))))(((.(((...))).)))(((((((((.((....((((....))))......(((.((.((........)).))))).....(((((.................))))))).)))...))))))...............((.((((........)))).)).((..(((((((...)))))))..)))))))))))).................(((...((((((.(((...........))).)))).))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
...................................................................................................................................................................................................................................................................................................................................AACATCAACGGTTTCATCTCG...................................................... 21 3 4 4.75 19 16 0 3 0 0 0 0
..................................................................................................................................................CAGAACGACAGCTCGGAGCC........................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CGGAAATTATGGACGAGAT.................. 19 2 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................CAAGACGGAACTCCT........................... 15 1 5 0.20 1 0 0 0 0 0 1 0
...........................................................................................TGCGTAAAAGTGGCGGACAAAA............................................................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 1 0 0 0
..............................................................................................CTAAAAGTGACCGAGAAAATG........................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0
..........................TACCTGACAGCGTGGGAGA................................................................................................................................................................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................GGAGTTTCAAGACGGGACT.............................. 19 3 9 0.11 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................CGTCATTAAAGAGATCACC............................................................................ 19 3 14 0.07 1 1 0 0 0 0 0 0
....................................................................................TGTTTCGTGAGTAAA........................................................................................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 1 0 0
.........................................................................................................................................................................AATACATGCACCACGTCT................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
.................................................GGAAACCCTGATGGAGACC.......................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

CGGACCAGTTGACGCACCACTCGCAGATGAACTCTCGCGCCCTCTTGTTCCATTGCGCCTACCTCTGGATATTTATATAAGGTTACAAAGCACTGATTTTCACCGCCTCTTTTCCAGCGGGATTGCCTAAGCAAAGTAGTCGAAGGGTCTTGCTGTCGAGCCTCGGTTTTTATGTAAGTGGTGGAAAAGTAAACACAGCAGGAATTAAAAAGTTAAAAGGATTAGAGCAATACAACAGATGATGTAACGGAACAAGTACTTACGAAATACTATCTAAAGTAGGCGTACGATGAAAGCGGGAAGGCAGTCATTTCTCAAATGGATTGTAGTTGCGAAAGTGTAGCCGTCCACTCGAAGTTCTGCCTTGAAGACCTGCTCTAGGCGAAGTAAAATGTTAC
**************************************************.....((((((((((......((((((......))))))(((.(((...))).)))(((((((((.((....((((....))))......(((.((.((........)).))))).....(((((.................))))))).)))...))))))...............((.((((........)))).)).((..(((((((...)))))))..)))))))))))).................(((...((((((.(((...........))).)))).))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 M024
male body		 SRR902008
ovaries
 SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................TTGTAGTTGCCAAAGTAGAGC...................................................... 21 3 4 1.25 5 4 0 0 1 0 0 0 0 0 0 0 0
...............ACTACTCGCAGATGA................................................................................................................................................................................................................................................................................................................................................................................ 15 1 3 1.00 3 2 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAAGTTAACAGGAGTAGATCAA........................................................................................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGGGAAGGCAGTCAA....................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGCGAAGTAGTCCAAGGG........................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................TGGTCGAGGCGAAGTAA........ 17 2 20 0.15 3 0 0 0 0 0 0 0 0 2 0 0 1
..............GACTACTCGCAGATGA................................................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GAAATTTTGCCTTGAAG............................ 17 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................ACGGGAAGGCAGTTAT....................................................................................... 16 2 20 0.15 3 0 0 0 2 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................CTGGTCAAGGCGAAGTAA........ 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................ATGTAAGTGGTGGGA.................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TAGCTTAATTAGGCGTACGA............................................................................................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AGGGTGTCGCGGTCGAGCCT........................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................TTGTAGTTGCCAAAGTAGAG....................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TAATTAGGCGTACGATG.......................................................................................................... 17 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................CAAAGTAGTCGAAGGTTT......................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................TAGCCGTCCACTCAA........................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................GCCTTGAAGAGCTGCGC.................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CATGGATTGTAGTTACGA............................................................... 18 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACCACGGGAAGGCAGTCAT....................................................................................... 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ATGCAGTGTAGTGGCGAAA............................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTCGGATTTTGTGTTAGTGG......................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................AGCCGTCCACTCGAC.......................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGGCAGTCATATCTCG................................................................................. 16 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................AAAGTCTCGCCGGCCACTC............................................. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ATTATAGCTGCGAGAGTGT......................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGTGTAAGTGGTGGGA.................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AGGGGATTGTAGTTGCGTA.............................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................TCCGAAGCACTGATTTTTA........................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................TCTGGTCAAGGCGAAGTAA........ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCTTCCTGTCGAGTCTC.......................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCTGTCGAGCCGCGGTT...................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCAAACTAGTCGAAGAGTC......................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 09:56 AM