dsi_29062

exon [3r_26311811_26311969_-]; CDS [3r_26311811_26311969_-]; exon [3r_26310987_26311731_-]; CDS [3r_26310987_26311731_-]; intron [3r_26311732_26311810_-]

##################################################-------------------------------------------------------------------------------################################################## TGCCTGCGTCATCGCGGGGCCATTCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCACTCTAAATCTTAAATATATATACTTAATAACTTTAATGCAAATTTACCTTGTCGTGCTCTTTCCTATCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA ************************************************.............................................((((.......))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	M024 male body	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902009 testis	M023 head	SRR553485 Chicharo_3 day-old ovaries
...........................................................................................................................................................GCTACGATCGTTATGGCTT.....	19	0	1	2.00	2	0	1	1	0	0	0	0	0
........................................................................................................................................GGAGCTGAACAGCCGTGCTGCTACG..................	25	1	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................................................................................CTACGATCGTTATGGCTTCC...	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................TCACTGCGTGGTCAGTGGAACGCCA...................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................AGTGCTGCTACGATCGTTATGGC.......	23	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................TACGATCGTTATGGCTTTCT..	20	1	1	1.00	1	0	0	1	0	0	0	0	0
....................CATTCACTGCGTGGTCAGTGGAA........................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0
......CGTCATCGCGGGGCCATTCACTG......................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................................................................CTGAACAGCAGTGCTGCTACGATCGT.............	26	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................GCTACGATCGTTATGGCTTCCT..	22	0	1	1.00	1	0	0	0	0	0	1	0	0
...............GGGGCCATTCACTGCGTG..................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
..................................................................................................................................GCCCAAGGAGCTGAACAGC..............................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................GTGCTGCTACGATCGTTATGGCT......	23	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................GCTGCTACGATCGTTATGGC.......	20	0	1	1.00	1	1	0	0	0	0	0	0	0
..................................................................................................................................................AGCAGTGCTGCTACGATCGTTATGG........	25	0	1	1.00	1	0	0	1	0	0	0	0	0
....................................................................................................................................CCAAGGAGCTGAACAGCAGT...........................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................AAGGAGCTGAACAGCAGTGCT........................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................GCTACGATCGTTATGGCTTCCTGA	24	0	1	1.00	1	0	1	0	0	0	0	0	0
................................GGTTAGTGGATCGCCAGT.................................................................................................................................	18	2	1	1.00	1	0	0	0	0	1	0	0	0
.....................................................................................................................................CAAGGAGCTGAACAGCAGTGCTGCTAC...................	27	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................GGAGCTGAACAGCAGTGCTGCTACGATC...............	28	0	1	1.00	1	0	0	1	0	0	0	0	0
.................GGCCATTCACTGCGTGGTCAGTG...........................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................................TGCCCAAGGAGCTGAACA................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................................AAGGAGATGAACAGCAGAGC.........................	20	2	3	0.33	1	0	0	0	1	0	0	0	0
.............................CGTGGACAGTGGAACTCC....................................................................................................................................	18	2	13	0.15	2	0	0	0	0	0	0	2	0
...................................................................................................TTTTACCTTGTCGTG.................................................................	15	1	13	0.08	1	0	0	0	0	0	0	0	1
..............................GTGGACAGTGGAACTCCAT..................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0

ACGGACGCAGTAGCGCCCCGGTAAGTGACGCACCAGTCACCTTGCGGTCACATTCAGTGAGATTTAGAATTTATATATATGAATTATTGAAATTACGTTTAAATGGAACAGCACGAGAAAGGATAGGTCACGGGTTCCTCGACTTGTCGTCACGACGATGCTAGCAATACCGAAGGACT ************************************************.............................................((((.......))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR902008 ovaries	M023 head
.....................................................................................................................................................TCACGACGATACCAGCAA............	18	2	3	0.33	1	0	1	0	0	0
.....................................................................................................................AAAAGATAGGTCACGG..............................................	16	1	3	0.33	1	1	0	0	0	0
.................................................................................................................CGAGGATGGATAGGACACG...............................................	19	3	8	0.13	1	0	0	1	0	0
............................................................................................................................................................TTTGCTAGCAATACCGAAGA...	20	3	8	0.13	1	0	0	0	1	0
..................CCGTAAGTGGCGCACCAAT..............................................................................................................................................	19	3	9	0.11	1	0	0	0	0	1
.................................................................................................................CGAGAATGGATAGGACATG...............................................	19	3	10	0.10	1	0	0	1	0	0
................................................................................................................CCGAGGATGGATAGGTCA.................................................	18	3	20	0.05	1	0	0	1	0	0
.....................................................................................................................AGAAGATAGGTCACGG..............................................	16	2	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:26311682-26311860 -	dsi_29062	TGCCTGCGTCATCGCGGGGCCATTCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TCTAAATCTTA-----AA--------TATATA--------------------------------------------------TACT----TAATAACTTTAATGC-------AAATTTAC--------------------------CTT-------------------------------------------------------------------G----TCGTG---CTCT---TTCC--TATCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA
droSec2	scaffold_4:5826338-5826514 -		TGCCTGCGTCATCGCGGGGCCATTCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TCTAAATCTTA-----GA--------TATATA--------------------------------------------------TACT----TAA---------------------------TTATATACTT---A-----TACTAACCTT-------------------------------------------------------------------G----GCGTG---CTCT---TTCC--TATCCAGTGCCCAAGGAGCAGAACAGCAGTGTTGCTACGATCGTTATGGCTTTCTGA
dm3	chr3R:27008202-27008386 -		TGCCTGCGTCATCGCGGGGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTTGC------------------TCTAAATCTTATTGTAGA--------TATATA--------------------------------------------------TTCT----TAATAACTTTAATGC-------AAATTTACCT----T---------------------T-------------------------------------------------------------------G----TCGTA---CTCT---TTCC--TATCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA
droEre2	scaffold_4820:976662-976833 +		TGCCTGCGTCATCGCGGCGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TTCATAAC-----------------------------------------------------------------------------------------TTCTATAT-------AAACTTACAT----TTAT----------------GCTGT-----------------------------------------------------------------TTATCTCATACTCCTCA---TACT--CCTCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGCTATGGCTTCCTGA
droYak3	3R:27943976-27944177 -		TGCCTGCGTCATCGCGGAGCCATCCACTGCGTGGTCAGTGGCACGCCAGTGTAAGTTGC------------------TCTAAATCTTC-----GA--------CTTATATACCCACTTGCAGGAGTCA---------------------------------CT----TAATAACTTCTATAT-------AAACTTGCAT----TAAT----------------CCT-------------------------------------------------------------------G----TGTAA---CCCA---TTCC--TCTCCAGTGCCCAAGGAGCTGAGCAGCAGTGCTGCTACGATCGCTATGGCTTCCTGA
droEug1	scf7180000409166:25252-25441 +		TGCCTGAGGCATCGTGGAGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTAGA------------------TA--GTT-----------AAATGAAAT------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAAAATATTAAAAGAAGTACTTTAGCAAGTTTGTTACATCTG-----AATA---CCCT---TTCTTCTCTTCAGCGCCCAAGGAGCCGAGCAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA
droBia1	scf7180000302113:306668-306775 +		TTT-----------------------------------------------------------------------------GAGTTTTA-----AA--------TGTATA--------------------------------------------------TTTT----CTTTGAA-----------------------------------------------------------------------------------------------------------------------TTAACTCATAACCATCC---TCCG--TCTTCAGTGCCCAAGGAGCCGAGCAGCAGTGCTGCTACGACCGCTACGGCTTCCTCA
droTak1	scf7180000415286:121075-121140 -		TGCCTGAGGCATCGCGGAGCCATCCACTGTGTGGTCAGCGGAACGCCAGTGTAAGTGGG------------------CTTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491194:1007954-1008045 -		TGCCTAAGGCATCGTGGCGCCATCCACTGTGTGGTCAGCGGAACGCCAGTGTAAGTACT------------------TTTATAT---------------------------------------------------------------------------------------------------------AAATTTA-------------------------------------------------------------------------------------------------------------------------------------------------TAAATATTTCAAATATAAT----------------
droRho1	scf7180000777206:325151-325215 +		CCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTAT--TATCTAGGGCCCAAGGAGCTGAGCAGCAGTGCTGCTATGATCGTTATGGCTTCCTGA
droFic1	scf7180000453782:298747-298980 +		TGCCTGAGGCATCGCGGAGCCATCCATTGTGTGGTCAGCGGAACGCCAGTGTGAGTAGC------------------TTC--------------------------------------------------------------------------------TCGAAATCCT-CAATTGA-------------------------------ACTCAAATGCTT--GCTATACAAATTGGGTATTTGAACTAGAGGAAAAA-GGGAGAGGAGGATTTAATCGAAGATATTATAGTAGCAACTCATG---TTCT---G-TA--TCTCTAGTGCGCAGGGAGCTGAGCAGCAGTGCTGCTACGATCGTTACGGGTACCTGA
droKik1	scf7180000301923:119544-119722 -		TGCCTGCGGCATCGCGGAGCCATCCATTGTGTGGTCAGTGGAACGCCAGTGTAAGTATCTGCAAACAAGTATTGTTTTCTAAACCTTG-----TT--------TGTAAG--------------------------------------------------T----------------------------------------ATTT---AATT-----TT-------A-------------------------------------------------------------------ATGT----TTACT---T---CTAT--CTTTTAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTATGATCGTTATGGCTTCTTGA
droAna3	scaffold_13340:14392941-14393099 -		TGCCTCAGGCATCGGGGCGCTATTCATTGCGTGGTCAGTGGAACGCCAGTGTAAGTATT------------------TTCATAAT--------------------------------------------------------------------------------------AA---------ATAAAAA--------TGAAAAA--------------------------------------------------------------CAGG-CTTCATTAC---------------------------------ATCCTTATTTTAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGCTATGGCTTCCTCA
droBip1	scf7180000395971:772291-772450 +		TGCCTCAGGCATCGTGGCGCCATTCATTGCGTGGTCAGTGGAACGCCAGTGTAAGTAAT------------------TTCAAAAT--------------------------------------------------------------------------------------AA---------AGAAAAG--------TTAAAA-------------------------------------------------------------AACAGC-CTTCCGTAT---------------------------------GTCCTTATTGTAGTGCCCAAGGAGCTGAACAACAGTGCTGCTACGATCGCTATGGCTACCTTA
dp5	2:124105-124275 +		TGCCTGCGCCAGCGCGGAGCCATCCACTGTGTGGTCAGTGGTACACCAGTGTAAGTAGA------------------AG-------------------------------------------------------------------GCCTTCTCATCTCCTCCTCCCCCA-----------------T------------AGCT---CATC-----TC-------T-------------------------------------------------------------------CTCC----CTCCT---TCTCATCT--CCTGCAGAGCCCAAGGAGCGGAACAACAGTGCTGCTATGATCGGTATGGCTTCCTCA
droPer2	scaffold_7:2915771-2915941 +		TGCCTGCGCCAGCGCGGAGCCATCCACTGTGTGGTCAGTGGTACACCAGTGTAAGTAGA------------------AG-------------------------------------------------------------------GCCTTCTCATCTCCTCCTCCTCCA-----------------T------------AGCT---CATC-----TC-------T-------------------------------------------------------------------CTCC----CTCCT---TCTCATCT--CCTGCAGAGCCCAAGGAGCGGAACAACAGTGCTGCTATGATCGGTATGGCTTCCTCA
droWil2	scf2_1100000004921:674359-674537 -		TGTTTGCGTCAACGTGGCGCCATTCATTGTGTGGTCAGCGGTACCCCAGTGTAAGTCCG------------------AATAGATG-----------------------------------GGGAGATAGTTGGTAATTGGGAAAAAAGCTAATTACCTTTTTGCAATCCA-----------------C------------AATC-------------------------------------------------------------------------------------------------------------------CACACAGGGCCCAAGGAGCTGAACAGCAATGTTGTTATGATCGCTATGGCTATTTGA
droVir3	scaffold_12855:1274180-1274291 +		CTTT------AACTCAGACTTATCT--------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-------GATA----TGATATTCAT---G-----TG-------T-------------------------------------------------------------------TTGC----------TTC---GTCCTCTCTATAGTGCCCAGGGAGCTGAGCAGCAGTGCTGTTATGATCGCTATGGTTTCCTGA
droMoj3	scaffold_6540:27020432-27020596 +		TGCTTGCGCCACAGTGGTGCCATTCATTGCGTGGTCAGCGGAACACCAGTGTAAGTAGT------------------AATATAT-----------TT--------------------------------------------------------------ATCCACTCTCA-----------------C------------GATC---CACT-----TC-------A-------------------------------------------------------------------T----CAATGTCC---TTTCTCCC--CCTTTAGTGCCCAAGGTGCTGAGCAGCAGTGCTGCTACGATCGCTACGGATTCCTGA
droGri2	scaffold_14624:3864493-3864618 +		TGTTTGCGGCAGCGCGGTGCCATTCATTGTGTGGTCAGCGGCACCCCAGTGTAAGTCAA------------------TA--AAT-----------TTATGCAATATCTA--------------------------------------------------TTTTTAGATAATAATTTGTGCTC-------AAAT-CAT--------------------------TTA-------------------------------------------------------------------T----TCATA---TTTT---TTCT--T--------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGCCTGCGTCATCGCGGGGCCATTCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TCTAAATCTTA-----AA--------TATATA--------------------------------------------------TACT----TAATAACTTTAATGC-------AAATTTAC--------------------------CTT-------------------------------------------------------------------G----TCGTG---CTCT---TTCC--TATCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGTTATGGCTT.....	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTACGATCGTTATGGCTTCC...	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCACTGCGTGGTCAGTGGAACGCCA........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGTTATGGC.......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CATTCACTGCGTGGTCAGTGGAA.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGTCATCGCGGGGCCATTCACTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CTGAACAGCAGTGCTGCTACGATCGT.............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGTTATGGCTTCCT..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............GGGGCCATTCACTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGC..............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTACGATCGTTATGGCT......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGTTATGGC.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGTTATGG........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAACAGCAGT...........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAGTGCT........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGTTATGGCTTCCTGA	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCTGAACAGCAGTGCTGCTAC...................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAGTGCTGCTACGATC...............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GGCCATTCACTGCGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCTGAACA................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGCCTGCGTCATCGCGGGGCCATTCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TCTAAATCTTA-----GA--------TATATA--------------------------------------------------TACT----TAA---------------------------TTATATACTT---A-----TACTAACCTT-------------------------------------------------------------------G----GCGTG---CTCT---TTCC--TATCCAGTGCCCAAGGAGCAGAACAGCAGTGTTGCTACGATCGTTATGGCTTTCTGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................GTTGCTACGATCGTTATGG........	19	1	3.00	3	0	1	2	0
..................................................................................................................................................................................................................................................................................................................................................AGAACAGCAGTGTTGCTACGATC...............	23	1	2.00	2	0	2	0	0
............................GCGTGGTCAGTGGAACGCCAGTTGC...................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGTTATGGCTTT....	20	1	2.00	2	1	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CAGTGTTGCTACGATCGTTATGG........	23	1	2.00	2	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................AGCAGAACAGCAGTGTTGCTACGAT................	25	1	2.00	2	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGTTGCTACGATCGTTAT..........	20	1	1.00	1	0	0	1	0
...................CCATTCACTGCGTGGTCA...................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGTTGCTACGATCGTTATGGC.......	23	1	1.00	1	0	1	0	0
.......GTCATCGCGGGGCCATTCA..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......GTCATCGCGGGGCCATTCACTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCAGAACAGCAGT...........................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................GCAGAACAGCAGTGTTGCTACGATCG..............	26	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................GAACAGCAGTGTTGCTACGATC...............	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................TGCTACGATCGTTATGGCTTT....	21	1	1.00	1	0	1	0	0
............................GCGTGGTCAGTGGAACGC..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCAGAACAGCAGT...........................	23	1	1.00	1	0	0	1	0
..................................................GTAAGTCAC------------------TCTAAATCTTA-----GA--------T................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCAGAACAGC..............................	18	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGTTGCTACGATCGTTATGGCTTT....	25	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................GCAGAACAGCAGTGTTGCTACGATC...............	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GTGTTGCTACGATCGTTATGGCT......	23	1	1.00	1	0	1	0	0
.........................ACTGCGTGGTCAGTGGAACGCCAGT......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................TGTTGCTACGATCGTTATGGCTTT....	24	1	1.00	1	0	1	0	0

dm3

TGCCTGCGTCATCGCGGGGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTTGC------------------TCTAAATCTTATTGTAGA--------TATATA--------------------------------------------------TTCT----TAATAACTTTAATGC-------AAATTTACCT----T---------------------T-------------------------------------------------------------------G----TCGTA---CTCT---TTCC--TATCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................CGTGGTCAGTGGAACGCCAGT......................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TACGATCGTTATGGCTTCCTGA	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGCAGT...........................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGTTATGGCT......	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGCTACGATCGTTATGGCT......	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................CGTGGTCAGTGGAACGCCAGTTG....................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGCGTGGTCAGTGGAACG...........................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAGTGCT........................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................GAGCTGAACAGCAGTGCTGCTACGATC...............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTACGATCGTTATGG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................GTCAGTGGAACGCCAGTTGC...................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCCTGCGTCATCGCGGCGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTCAC------------------TTCATAAC-----------------------------------------------------------------------------------------TTCTATAT-------AAACTTACAT----TTAT----------------GCTGT-----------------------------------------------------------------TTATCTCATACTCCTCA---TACT--CCTCCAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGCTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................CTACGATCGCTATGGCTTC....	19	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGCTATGGCTTCCT..	22	1	2.00	2	0	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTATGGCTT.....	25	1	2.00	2	0	0	0	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTATGG........	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................AGGAGCTGAACAGCAGTGC.........................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTACGATCGCTATGGCTTC....	25	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGCTATGGCTT.....	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGCAGTGCTG.......................	26	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAACAGCAGTGCTGCTAC...................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................GCTGAACAGCAGTGCTGCTACGAT................	24	1	1.00	1	1	0	0	0	0	0	0
...........................TGCGTGGTCAGTGGAACGCCA........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................CGTGGTCAGTGGAACGCCA........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTACGATCGCTATGGC.......	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTATGGCTTC....	26	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................AGCTGAACAGCAGTGCTG.......................	18	1	1.00	1	0	0	0	0	0	1	0
.GCCTGCGTCATCGCGGCGCCATCC...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AGCTGAACAGCAGTGCTGCTACGATC...............	26	1	1.00	1	0	1	0	0	0	0	0
..........................CTGCGTGGTCAGTGGAACGC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................GCGTGGTCAGTGGAACGCCAGTTGC...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................AGGAGCTGAACAGCAGTGCTGCTAC...................	25	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCTGAACAGCA.............................	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTACGATCGCTATGGCTTCCTGA	23	1	1.00	1	1	0	0	0	0	0	0
............................GCGTGGTCAGTGGAACGCCAGT......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

droYak3

TGCCTGCGTCATCGCGGAGCCATCCACTGCGTGGTCAGTGGCACGCCAGTGTAAGTTGC------------------TCTAAATCTTC-----GA--------CTTATATACCCACTTGCAGGAGTCA---------------------------------CT----TAATAACTTCTATAT-------AAACTTGCAT----TAAT----------------CCT-------------------------------------------------------------------G----TGTAA---CCCA---TTCC--TCTCCAGTGCCCAAGGAGCTGAGCAGCAGTGCTGCTACGATCGCTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTATGG........	25	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCT............	21	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAGCAGCAGT...........................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......GTCATCGCGGAGCCATCCACTGCGT........................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........CATCGCGGAGCCATCCACTGCGTGGTCAGT.................................................................................................................................................................................................................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTATGGC.......	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCTGAGCAGCAGTGCTG.......................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CATCGCGGAGCCATCCACTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGCTGCTACGATCGCTATGGC.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................GAGCCATCCACTGCGTGGTCAGT.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTAT..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GAGCTGAGCAGCAGTGCTG.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGGAGCTGAGCAGCAGTGCTGC......................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTACGATCGCTATGG........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAGCAGCAGTG..........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...CTGCGTCATCGCGGAGCCATCCACTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............CGGAGCCATCCACTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCTGAGCAGCA.............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGCTACGATCGCTATGG........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTAT..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........ATCGCGGAGCCATCCACTGCGTGGTCA...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGCTATGGC.......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GAGCCATCCACTGCGTGGTC....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAGCAGCAGTGCTGCTAC...................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTATGG........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................CATCCACTGCGTGGTCAGTGGC..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GTCATCGCGGAGCCATCCACT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTACGATCGCTATGGCTTCCT..	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGCTATGGCTTC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TACGATCGCTATGGCTTCCT..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GAGCCATCCACTGCGTGGTCAGTGGCA.............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGCTACGATCGCT............	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCG..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................CACTGCGTGGTCAGTGGCACGCC.........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................GCCATCCACTGCGTGGTCAGTGGC..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GTCATCGCGGAGCCATCCACTGCGTGGT.....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAGCAGCAGTGCTG.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAGCAGCAGTGCT........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GCCTGCGTCATCGCGGAGCCATCCACT............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCCCAAGGAGCTGAGCAGCAGTGCTGC......................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TACGATCGCTATGGCTTC....	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTACGATCGCTATGGCT......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................CCATCCACTGCGTGGTCAGTGGC..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGCTACGATCGCTATGGC.......	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...CTGCGTCATCGCGGAGCCATC................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
TGCCTGCGTCATCGCGGAG.....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAGCAGCA.............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCTGAGCAGCAGTGCTG.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAGCAGCAGTGCTGCTA....................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTATG.........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............GGAGCCATCCACTGCGTGGTC....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TGCCTGAGGCATCGTGGAGCCATCCACTGCGTGGTCAGTGGAACGCCAGTGTAAGTAGA------------------TA--GTT-----------AAATGAAAT------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAAAATATTAAAAGAAGTACTTTAGCAAGTTTGTTACATCTG-----AATA---CCCT---TTCTTCTCTTCAGCGCCCAAGGAGCCGAGCAGCAGTGCTGCTACGATCGTTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTT-----------------------------------------------------------------------------GAGTTTTA-----AA--------TGTATA--------------------------------------------------TTTT----CTTTGAA-----------------------------------------------------------------------------------------------------------------------TTAACTCATAACCATCC---TCCG--TCTTCAGTGCCCAAGGAGCCGAGCAGCAGTGCTGCTACGACCGCTACGGCTTCCTCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCCTGAGGCATCGCGGAGCCATCCACTGTGTGGTCAGCGGAACGCCAGTGTAAGTGGG------------------CTTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCCTAAGGCATCGTGGCGCCATCCACTGTGTGGTCAGCGGAACGCCAGTGTAAGTACT------------------TTTATAT---------------------------------------------------------------------------------------------------------AAATTTA-------------------------------------------------------------------------------------------------------------------------------------------------TAAATATTTCAAATATAAT----------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTAT--TATCTAGGGCCCAAGGAGCTGAGCAGCAGTGCTGCTATGATCGTTATGGCTTCCTGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCCTGAGGCATCGCGGAGCCATCCATTGTGTGGTCAGCGGAACGCCAGTGTGAGTAGC------------------TTC--------------------------------------------------------------------------------TCGAAATCCT-CAATTGA-------------------------------ACTCAAATGCTT--GCTATACAAATTGGGTATTTGAACTAGAGGAAAAA-GGGAGAGGAGGATTTAATCGAAGATATTATAGTAGCAACTCATG---TTCT---G-TA--TCTCTAGTGCGCAGGGAGCTGAGCAGCAGTGCTGCTACGATCGTTACGGGTACCTGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCCTGCGGCATCGCGGAGCCATCCATTGTGTGGTCAGTGGAACGCCAGTGTAAGTATCTGCAAACAAGTATTGTTTTCTAAACCTTG-----TT--------TGTAAG--------------------------------------------------T----------------------------------------ATTT---AATT-----TT-------A-------------------------------------------------------------------ATGT----TTACT---T---CTAT--CTTTTAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTATGATCGTTATGGCTTCTTGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCCTCAGGCATCGGGGCGCTATTCATTGCGTGGTCAGTGGAACGCCAGTGTAAGTATT------------------TTCATAAT--------------------------------------------------------------------------------------AA---------ATAAAAA--------TGAAAAA--------------------------------------------------------------CAGG-CTTCATTAC---------------------------------ATCCTTATTTTAGTGCCCAAGGAGCTGAACAGCAGTGCTGCTACGATCGCTATGGCTTCCTCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................GCTGAACAGCAGTGCTGCTAC...................	21	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGCAGT...........................	22	1	2.00	2	0	0	1	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAGT...........................	18	1	1.00	1	0	1	0	0	0	0
........................CATTGCGTGGTCAGTGGAACGC..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................GCGCTATTCATTGCGTGGTCAGC.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGCTATGGC.......	20	1	1.00	1	0	0	0	0	1	0
.........................ATTGCGTGGTCAGTGGAACGC..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............CGGGGCGCTATTCATTGCGTGGTCAGC.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAGCAGTGCTGCTACGATCGCTATGG........	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................GAACAGCAGTGCTGCTACGATCGCT............	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAGCAGTGCTGCTACGATCGCTATGGC.......	28	1	1.00	1	0	0	0	0	1	0
..................GCTATTCATTGCGTGGTCAGTGGA..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............GGGCGCTATTCATTGCGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCTGAACAGCAGT...........................	21	1	1.00	1	1	0	0	0	0	0
........................CATTGCGTGGTCAGTGGAACGCCA........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGCAGTGCT........................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCTACGATCGCTATGGCTTC....	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAGTGCTGC......................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCTGAACAGCAGTGCTG.......................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAGTGCTG.......................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGCTATGGCTTCCTC.	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAGTGCTGCTACGAT................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAAGGAGCTGAACAGC..............................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTATGGCT......	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAACAGCAGTGCTGCTAC...................	28	1	1.00	1	0	1	0	0	0	0

droBip1

TGCCTCAGGCATCGTGGCGCCATTCATTGCGTGGTCAGTGGAACGCCAGTGTAAGTAAT------------------TTCAAAAT--------------------------------------------------------------------------------------AA---------AGAAAAG--------TTAAAA-------------------------------------------------------------AACAGC-CTTCCGTAT---------------------------------GTCCTTATTGTAGTGCCCAAGGAGCTGAACAACAGTGCTGCTACGATCGCTATGGCTACCTTA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCCTGCGCCAGCGCGGAGCCATCCACTGTGTGGTCAGTGGTACACCAGTGTAAGTAGA------------------AG-------------------------------------------------------------------GCCTTCTCATCTCCTCCTCCCCCA-----------------T------------AGCT---CATC-----TC-------T-------------------------------------------------------------------CTCC----CTCCT---TCTCATCT--CCTGCAGAGCCCAAGGAGCGGAACAACAGTGCTGCTATGATCGGTATGGCTTCCTCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................CAACAGTGCTGCTATGATCGGTATGGC.......	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTATGATCGGTATGG........	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAACAGTGCTGCTATGATCGGT............	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAACAGTGCTGCTATGATCGGT............	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTATGATCGGTATGGC.......	20	1	2.00	2	0	0	1	0	1	0	0	0	0	0
.............GCGGAGCCATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCG..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTAT...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................GGTCAGTGGTACACCAGTA.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGTA...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCGGAACAACAGTGCTG.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCGGAACAACAGTGCT........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTATGATCGGTATGGC.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GTGTGGTCAGTGGTACACCAGT......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAACAGTGCTGCTATGATCGGC............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTATGATCGGTATGGCTT.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAACAGTGCTGCTATGATCGGTATGG........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGTGCTGCTATGATCGGT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CACTGTGTGGTCAGTGGTA.............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CGGAACAACAGTGCTGCTAT...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCGGAACAACAGTGCT........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCGGTAC..........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................GAGCCATCCACTGTGTGGTCAGTGGTAC............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGCTGCTATGATCGGTATG.........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............CGGAGCCATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGCCATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCGGT............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GATCGGTATGGCTTCCTC.	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........AGCGCGGAGCCATCCACTGTGTGGTCA...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATG..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAACAGTGCTGCTATGATCGGTAT..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGTAT..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GCCATCCACTGTGTGGTCAGT.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATC...............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAACAGTGCTGCTATGAT................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAACAGTGCTGCTATGATCGG.............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGTATGGCT......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CATCCACTGTGTGGTCAGTGGTA.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAACAGTGCTGCTATGATC...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAACAGTGCTGCTATGATCGGTAT..........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GCGCCAGCGCGGAGCCAT.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TGCCTGCGCCAGCGCGGAGCCATC................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CATCCACTGTGTGGTCAGT.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCG..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAACAGTGCTGCTATGATCGGT............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................GGTCAGTGGTACACCAGTAGC...................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................GTCAGTGGTACACCAGTAGC...................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGCCTGCGCCAGCGCGGAGCCATCCACTGTGTGGTCAGTGGTACACCAGTGTAAGTAGA------------------AG-------------------------------------------------------------------GCCTTCTCATCTCCTCCTCCTCCA-----------------T------------AGCT---CATC-----TC-------T-------------------------------------------------------------------CTCC----CTCCT---TCTCATCT--CCTGCAGAGCCCAAGGAGCGGAACAACAGTGCTGCTATGATCGGTATGGCTTCCTCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCGGAACAACAGTGCTG.......................	23	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCGG.............	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGT............	21	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGTATGGCT......	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AACAGTGCTGCTATGATCGGTATGGC.......	26	1	1.00	1	1	0	0	0	0	0
....................CATCCACTGTGTGGTCAGTGGTA.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................GCCATCCACTGTGTGGTCAGT.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAACAGTGCTGCTATGATCGGT............	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTATGATCGGTATGGCTTCCTC.	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ATGATCGGTATGGCTTCCT..	19	1	1.00	1	0	1	0	0	0	0
.....................ATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
....................CATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCGGTATG.........	29	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................CAGTGCTGCTATGATCGGT............	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACAACAGTGCTGCTATGATCG..............	21	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGCTGCTATGATCGGTATGGCT......	23	1	1.00	1	1	0	0	0	0	0
...........GCGCGGAGCCATCCACTGTGTG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......GCCAGCGCGGAGCCATCCACT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGAACAACAGTGCTGCTATGATCG..............	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTATGATCGGT............	18	1	1.00	1	0	1	0	0	0	0
..................GCCATCCACTGTGTGGTCAGTG................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGTGCTGCTATGATCGGTA...........	20	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCGGAACAACAGTGCTGCT.....................	24	1	1.00	1	0	1	0	0	0	0
.................................GTCAGTGGTACACCAGTAGC...................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0	0	0

droWil2

TGTTTGCGTCAACGTGGCGCCATTCATTGTGTGGTCAGCGGTACCCCAGTGTAAGTCCG------------------AATAGATG-----------------------------------GGGAGATAGTTGGTAATTGGGAAAAAAGCTAATTACCTTTTTGCAATCCA-----------------C------------AATC-------------------------------------------------------------------------------------------------------------------CACACAGGGCCCAAGGAGCTGAACAGCAATGTTGTTATGATCGCTATGGCTATTTGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGTT........................	21	1	8.00	8	0	1	5	2	0
..........................................................................................................................................................................................................................................................................................................................................................AATGTTGTTATGATCGCTATGGC.......	23	1	5.00	5	1	0	4	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTTGTTATGATCGCTATGGC.......	20	1	5.00	5	0	2	3	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGTTGT......................	23	1	3.00	3	0	0	3	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAACAGCAAT...........................	20	1	3.00	3	0	1	2	0	0
................................................................................................................................................................................................................................................................................................................................................................GTTATGATCGCTATGGCTATTT..	22	1	3.00	3	0	1	1	1	0
..........AACGTGGCGCCATTCATTGTGTGGTC....................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCTGAACAGCAATGTTGTT.....................	25	1	2.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGT.........................	20	1	2.00	2	0	0	1	1	0
............................................................................................................................................................................................................................................................................................................................................................TGTTGTTATGATCGCTATGGCT......	22	1	2.00	2	0	0	2	0	0
..........AACGTGGCGCCATTCATTGTGTG.......................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0
................................................................................................................................................................................................................................................................................................................................................................GTTATGATCGCTATGGCT......	18	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGTTATGATCGCTATGGCT......	19	1	2.00	2	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................GGCCCAAGGAGCTGAACAGCAATGTT........................	26	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................TATGATCGCTATGGCTATTT..	20	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCTGAACAGCAATGT.........................	21	1	2.00	2	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGTTATGATCGCTATGGC.......	18	1	2.00	2	0	1	0	1	0
..................GCCATTCATTGTGTGGTC....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................GGCCCAAGGAGCTGAACAGC..............................	20	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GGCCCAAGGAGCTGAACA................................	18	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAAT...........................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGTTGTT.....................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGTTGTTA....................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................ATGTTGTTATGATCGCTATG.........	20	1	1.00	1	0	1	0	0	0
.GTTTGCGTCAACGTGGCGCCATT................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................AATGTTGTTATGATCGCTATG.........	21	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTTGTTATGATCGCTATGGCT......	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................GAGCTGAACAGCAATGTT........................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................GTTGTTATGATCGCTATG.........	18	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCAAGGAGCTGAACAGCAATGTTGT......................	25	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCTGAACAGCAATGTT........................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAATGTTGTTATGATCGCTATGGC.......	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TATGATCGCTATGGCTATTTG.	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAATGTTGTTATGATCGCTATGGCT......	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................CCCAAGGAGCTGAACAGCAATGTT........................	24	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................AACAGCAATGTTGTTATGATC...............	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGAGCTGAACAGCAATGTTGTTATGA.................	28	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................CAAGGAGCTGAACAGCAATGTTG.......................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................AGGAGCTGAACAGCAATGTT........................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAATGTTGTTATGATCGCTATGGC.......	26	1	1.00	1	0	0	1	0	0
............................GTGTGGTCAGCGGTACCCCAGT......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAATGT.........................	18	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GAGCTGAACAGCAATGTTGTTATGAT................	26	1	1.00	1	0	1	0	0	0
...............GGCGCCATTCATTGTGTGGTCAGCGGT..............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGAGCTGAACAGCAATGTT........................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................GAACAGCAATGTTGTTATGATCG..............	23	1	1.00	1	0	0	0	1	0
..................................TCAGCGGTACCCCAGTGGCC..................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
...................................CAGCGGTACCCCAGTGGCC..................................................................................................................................................................................................................................................................................................................................	19	7	0.43	3	0	0	0	3	0

droVir3

CTTT------AACTCAGACTTATCT--------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-------GATA----TGATATTCAT---G-----TG-------T-------------------------------------------------------------------TTGC----------TTC---GTCCTCTCTATAGTGCCCAGGGAGCTGAGCAGCAGTGCTGTTATGATCGCTATGGTTTCCTGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................AGGGAGCTGAGCAGCAGTGCT........................	21	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAGGGAGCTGAGCAGC..............................	19	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGTTATGATCGCTATGGTTTCCT..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGTTATGATCGCT............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAGGGAGCTGAGCAGCA.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGTTATGATCGCTATG.........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGTTATGATCGCTATG.........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAGGGAGCTGAGCAGCAGTGCT........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGTTATGATCGCTATG.........	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GCAGCAGTGCTGTTATGATCGCTATG.........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AGCTGAGCAGCAGTGCTGTT.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GAGCTGAGCAGCAGTGCTG.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTGTTATGATCGCTATGGT.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCCCAGGGAGCTGAGCAGCAGT...........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTTATGATCGCTATGGTTTCCT..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

TGCTTGCGCCACAGTGGTGCCATTCATTGCGTGGTCAGCGGAACACCAGTGTAAGTAGT------------------AATATAT-----------TT--------------------------------------------------------------ATCCACTCTCA-----------------C------------GATC---CACT-----TC-------A-------------------------------------------------------------------T----CAATGTCC---TTTCTCCC--CCTTTAGTGCCCAAGGTGCTGAGCAGCAGTGCTGCTACGATCGCTACGGATTCCTGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTACGGA.......	26	1	6.00	6	4	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................GCAGTGCTGCTACGATCGCTACGGA.......	25	1	4.00	4	2	0	0	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................GCAGCAGTGCTGCTACGATCGCTACGGA.......	28	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTACGGATT.....	28	1	2.00	2	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................CCAAGGTGCTGAGCAGCAGTG..........................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGTGCTGCTACGATCGCTACGGATTC....	27	1	1.00	1	0	0	0	1	0	0
..................GCCATTCATTGCGTGGTCA...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAGGTGCTGAGCAGCAGTGCTGCT.....................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTACGGT.......	26	1	1.00	1	1	0	0	0	0	0
.........................ATTGCGTGGTCAGCGGAACAC..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................GCTGCTACGATCGCTACGGATT.....	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTACGATCGCTACGGATTCCT..	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGCAGTGCTGCTACGATCGCTACGG........	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGTGCTGCTACGATCGCTACGG........	23	1	1.00	1	1	0	0	0	0	0
..........................TTGCGTGGTCAGCGGAACAC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

TGTTTGCGGCAGCGCGGTGCCATTCATTGTGTGGTCAGCGGCACCCCAGTGTAAGTCAA------------------TA--AAT-----------TTATGCAATATCTA--------------------------------------------------TTTTTAGATAATAATTTGTGCTC-------AAAT-CAT--------------------------TTA-------------------------------------------------------------------T----TCATA---TTTT---TTCT--T--------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_29062

3r:26311732-26311810 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads