ID:

dsi_29051

 Coordinate:

3r:23729479-23729761 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.4 -49.3 -49.3

Flybase annnotation

exon [3r_23729762_23729941_-]; CDS [3r_23729762_23729941_-]; exon [3r_23729308_23729478_-]; CDS [3r_23729308_23729478_-]; intron [3r_23729479_23729761_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTATATGGTGGTGCCATGAATTGGGTAATGGGACTAGTTGTATGCAATATTTTGCTTGGGTTAATGAGTTATTTTAAGCTTAAGCCTCCTGGTTTTTCCTGGCTAACGGTATGTTCTTCCCAAACTTTCCTTCTCCCCCAAAAATTGCTTGGTTACTTTATTGTATGTGCATGATTGCTTGTTACTTGCTTTGCCGACTTTCCGAATCTGCACCCGCATCCGAATCTCCTCCTGCACCAAACACCTTCACCATCCCACAACCCCAGACCGCTGTGCGCTTCCTAAGCAAACTGGTGATTGCAGTGAAAAGCTGGCC
**************************************************.......................(((((((.......(((((((..((((....(((.((((........(((((((((..((((....)))))))))))))..((.((.....)).)).....((...(((.......)))...)).......((((.......)))).(((......))).(((((.((((...........((...))..........)))))))))..)))).)))...))))..))).)))).......)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..CGGAACATGCCTGCAACTACAACTGCC.................................................................................................................................................................................................................................................................................................................................................................. 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.ACGGAACATGCCTGCAACTACA........................................................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GATTGCTTGTTACTTGCTTTGCCGACT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TTGCTCGTGACTTGCATTGCC......................................................................................................................... 21 3 4 1.00 4 0 4 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................CTGGTGATTGCAGTGAAAAGCTGGC. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ATTGTAGTGACAAGCTGGCG 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0
.............................................................................................AATGGGACTGGTAGGATGCA.............................................................................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................TGCTCGTGACTTGCATTGCC......................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0
..................CTACAACTGTCGCCA.............................................................................................................................................................................................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0
...........................................................CTGATTTAGTCTAGGG.................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................CACAATCCCGGACCACTGT.......................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................ACTGGTGATTGGGGTGA.......... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................GACCGCTGAGCGGTTC................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................GCCCGGCTAGCTTAAA.............................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTGCCTTGTACGGACGTTGATGTTGACGGCGGTCGGGCCGCACGAATTTCCAAACTCTAGACTAAATCATATACCACCACGGTACTTAACCCATTACCCTGATCAACATACGTTATAAAACGAACCCAATTACTCAATAAAATTCGAATTCGGAGGACCAAAAAGGACCGATTGCCATACAAGAAGGGTTTGAAAGGAAGAGGGGGTTTTTAACGAACCAATGAAATAACATACACGTACTAACGAACAATGAACGAAACGGCTGAAAGGCTTAGACGTGGGCGTAGGCTTAGAGGAGGACGTGGTTTGTGGAAGTGGTAGGGTGTTGGGGTCTGGCGACACGCGAAGGATTCGTTTGACCACTAACGTCACTTTTCGACCGG
**************************************************.......................(((((((.......(((((((..((((....(((.((((........(((((((((..((((....)))))))))))))..((.((.....)).)).....((...(((.......)))...)).......((((.......)))).(((......))).(((((.((((...........((...))..........)))))))))..)))).)))...))))..))).)))).......)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR1275487
Male larvae		 SRR1275483
Male prepupae		 GSM343915
embryo
..............................................................................................................................................TTCCAATTCGGAGTGCCAA.............................................................................................................................................................................................................................. 19 3 10 9.50 95 95 0 0 0 0 0 0 0 0 0
................................................................................................................................................CCAATTCGGAGGACCA............................................................................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAAGGGTGAGACGTGGGTGTAGG............................................................................................... 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................TCCAATTCGGAGTGCCAA.............................................................................................................................................................................................................................. 18 3 20 0.60 12 12 0 0 0 0 0 0 0 0 0
..................................................................TCATATACCATCACAGGACTT........................................................................................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAAGGCCTAGACGTGG...................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAAGGGTGAGACGTGGGTGT.................................................................................................. 20 3 20 0.35 7 0 7 0 0 0 0 0 0 0 0
..............................................................................................................................................TTCCAATTCGGAGTGCCAAA............................................................................................................................................................................................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAACGGCTGAAGGGCATA............................................................................................................. 18 2 6 0.33 2 0 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................AAGGGTGAGACGTGGGTGTAG................................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AAGGGTGAGACGTGGGTGTAGG............................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AGGGTGTTGGGGACTG................................................ 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TGACAGGGTGTTGGGGTC.................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GGCAGGATGTTGGGGTCTT................................................ 19 3 8 0.25 2 0 0 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................GCTTGGACGTGGGCG................................................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TAGGGTGTTGGGGCGTGG............................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GGTAGGGTGTTGGGGC................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AAAGGGTGAGACGTGGGTGTA................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTAACGAATCAGTGAACTAAC......................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAACGGCTGAAGGGATTA............................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................ATTCCAATTCGGAGTGCCA............................................................................................................................................................................................................................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGCTGAAAGGCCTAG............................................................................................................ 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................CGGCTGAAAGGTTTA............................................................................................................. 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GAAGGGTGTTGGGGT................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GTAGGGTGTTGGGGC................................................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................GAGGGGGTCATTATCGAAC..................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CGGCAGGATGTTGGGGTC.................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................TTCCAATTCGGAGCGCCA............................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGGGGATTGAAAGCAAGA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................ATGAAATAACATACAT................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AGGGAGAGGGAGTTTTTAT.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:23729429-23729811 - dsi_29051 CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------ATGGTGGTGCCATGAATTG---------------GGT------AA-TGGGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------GCCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTCTCCCCC---A---AA-A--ATTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTTTGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTTCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGCTTCCTAAGCAAACTGGTGATTGCAGTGAAAAGCTGGCC
droSec2 scaffold_22:954530-954912 - CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------ATGGTGGTGCCATGAATTG---------------GGT------TA-TGGGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------ACCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCCAACTTTCCTTCTCCCCC---A---AA-A--ATTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTCCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGATTCCTAAGCAAACTGGTGATTGCAGTGAAAAGCTGGCC
dm3 chr3R:24351260-24351642 - CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------GCTATGGTGCCTTGAGTTG---------------GGT------AA-TGAGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------ACCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCAAACGTTCCTTCTCCCCC---A---AA-A--ACTGCTTGGTTACT----A-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTTCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGCTCCCTAAGCAAACTGGTGATTGCAGTGAAAAACTGGCC
droEre2 scaffold_4820:3684045-3684417 + CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTTGTGG-----------------------------T------AA-TGGGATTGGTTGTATGC----AATATTATGCTT-GGGGTAATGGGTTATTTTAAGCTTAA------------------------GCATCCT---G--GTTTCTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA-------AC-A--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTTCCT---------------------ATTCCGAATCTGCACCCGC---------------------ATCCAAATCTCTTCCTGCA---CCA----------------AC--CA------------------------CCTGCACC-----------ATCCCA---C---------------------------CA--CCCCAGACCGCTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCC
droYak3 3R:22145829-22146214 + CACGGAACATGCCTGCAGCTACAACTGTCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTGGCGGTGCCTTGAGTTG---------------GCT------AA-TGGGCTTAGTTGTATGC----TATTTTATGCTT-GGGTTAATGAGTTATTTTAAGCCTAA------------------------ACCTTCT---G--ATTTCTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA---AAAAAA-A--ACTGCTTGGTTACC----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCTTCCTGCA---CCA----------------AA--CA------------------------CCTCCACC-----------GTCCCA---C---------------------------AA--ACCCAGACCGCTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCC
droEug1 scf7180000409787:1229276-1229657 + GACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------GTTGTGGTGACTTGAATTG---------------GGT------AA-TGGGATTAGTTGTATGC----AACGTTCTGCTT-GGGTTTATGAATAGTTTTAAGCTTGA------------------------ATCCCTT---G--GTTCATCCTGGTTAATGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA---A---AA-A--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTATTTGCTATGCCGACTT--------------------------CCTGAATCTGCACCCGC---------------------ATCCGAATTTCCTCCTGCA---CCA----------------AA---A------------------------CATCCAAC-----------ATCCCA---C---------------------------GA--CCCCAGATCATTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCC
droBia1 scf7180000302075:2433786-2434179 + CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCTGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------TTCGTGGTGCCTTGAATGG---------------GGTAATGGTAA-TGGGACTAGTTGTTTGC----AACGTTATGCTT-TGGTTTATGAGTATCTTTAAGCTTAA------------------------ACCCTTT---G--GTTTCTCCTGGTTAACGGT-ATGTTCTTCCCACACTTTCCTTCTCCCCC---G---AAAA--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGATCT--------------------------CCTGAATCTGCACCCGC---------------------ATTCGAATCTCCTCCTGCACCACCA----------------AA--CA------------------------CCTCCACC-----------ATCCTA---T---G-----------------------AA--TCCCAGACCGCTGTGCGCTCCCTAAGCAAGCCGGTAATTGCAGTGAAAAGCTGGCC
droTak1 scf7180000415383:109223-109622 + GACGGAACACGCCTGCAACTACAACTGCCGCCAGCCTGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---C--------TTTGTGGTGTCTTGAATGG---------------GGTAAAGGTAA-TGGGATTAGTTGTATGC----AACGTTATGCTT-TGGTTTATGAGTAATTTTAAGCTTGA------------------------TCCTCTT---G--GTTTCTCCTGGTTAACGGT-ATGTTCTTCCCAAACTTTCCTTCTCC------------------TGCTTGGTTACT----T-TACTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCCGACCT--------------------------CCTGAATCTACACCTGC---------------------AACCGAATCTCCTCCTGCA---CCAACCACCAAAACACCAAAC--CA------------------------CCTCCACT-----------ATCCCA---CTATG-----------------------AA--TCCCAGACCAATGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCC
droEle1 scf7180000491280:3584528-3584931 + AACGGAACACGCCTGCAACTACAACTGCCGCCAACCGGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------ATTGCGGTGGCTTGTTTGG---------------GTT------AA-TGGGTTTAATTGTATGC----AATGTTTTGCTT-GGATCTATAAGTATTTTTAAGCTTGA------------------------ACCTCTC---T--GCTTATCCTGGTTAACGGT-ATCTTTTTCCCCCACTTTCCTTTTCCCAA---A---AA-AACAATGCTTGGTTACTTCTTT-TGTTGA--ATGCGCATGATTGCTTG-----TTATTTGCTATGCCGACTT--------------------------TCTGAATCTGCACCCGC---------------------AACCGATCCTCCTCCTGCA---CCC---------------------ACCGAT-ACCTT------CCCACCACCACCACC-----------A--CCACCAC---------------------------CG--ACCCAGACCACTGTGCTCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCC
droRho1 scf7180000779501:67614-68003 - GACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTTGCGGTGTCTTGTATTG---------------GTT------AA-TGGGTTTAGTTGTAAGC----AATTTGTTGCTT-GGGCCTATGATTAGTTTTAAGTTTGA------------------------ACCTCTT---T--GTCTATCCTGGTTAACGGT-ATGTTTTTC-CACACTTTCCTTCTCCCCA---A---AAAA--ATGGCTTGGTTACTTCTTT-AATTGT--ATGTGCATGACTGCTTG-----CTACTTGCTATACCGACTT--------------------------TCTGAATGTGCTCCCGC---------------------AACCGAATCTCCTCCCGCA---CC---------------------CACCGTT-ACCAT------CCCACCACC----------------------A---C---------------------------CA--CCCCAGATTACTGTGCGCTTCCTAAGCAAACTGGTGATTGCAGCGAAAAGCTGGCC
droFic1 scf7180000453581:266720-267126 + GACGGAACACGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCTGATATATTC---C--------GCTGCGGTGTCTTGTATTG---------------GGA------AA-TGGGTTTAAATGCATGC----TATGTATTGCTC-GGTTTTACGAGTAGTTTTAAGCTTGA------------------------TCCTTTT---G--TTTCATCCTGGTTAACGGT-ATGTTCTTCCCAAACTTTCCTCCTCCCTCTTCG---AA-A--ACTGCTTGGTTACATGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCCGACTTCCCGAA--------------------TCTGAATCCGCACCCGC---------------------AACCGAATA-CCCCCTGCA---CCCAACACCT-----CC--AC--CA------------------------CCTCCACC-----------ACCCCACGAC---------------------------CA--TCCCAGACCAATGTGCGCTTCCTAAGCAAACCGGTGATTGCAGCGAGAAACTGGCC
droKik1 scf7180000302256:115918-116331 - GACGGAACACGCCTGCAGCTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCTGATTTACTA---TGT-GG---TT-----TGTCT--TACTT------GTACTGTGGGGT------AGTTGGGATT-GTTA--TGGCCTATAAGCCTTGCTT-GGGTTCTTACATATTCTTAAGCTTGA------------------------TCCTCCTGATT--GCTTTTCCTGGCTAATGGT-ATGTTCTTCCCACACTTTCCTTCTCCCAC---G---AA-A--CTTGCTTGGTTACTTGGTT-TATTGTCTATGCGCATGATTGCTTG-----TTACTTGTTATGCCGAACT--------------------------CCTGAATCTGCACCCGA---------------------A------CC--TTCCT-CA---TCA----------------CC--CA------------------------CCTCCACGCCCACGTCCATGT-CCACCA--ATGAAC-CCATC--------------CA--ACCCAGACCAATGCTCGCTTCCTAAGCAAACCGGTGATTGCAGCGAACGGCTCGCC
droAna3 scaffold_13340:17154903-17155297 - GACGGAGCACGCTTGCAACTACAACTGCCGTCAGCCGGGCGTGCTCAAAGGTTTGAGATCAGATCTATTT---A--------ATTGTGATTTCTTTTACTG---------------GGT------AT-TGGGATTAGTTATCGGA----TATGTCTTGCTT-TGGGTTATAAGTAGTTCTAAGCTTAA------------------------ACTTGAA---T--CTTTATCCTGGTTAACGGT-ATGTTATTCCCGCACTCTCCTTTTCCTTC---C---AA----AATGCTTGGTTTCTTGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCTGACCACCTGAATCC-ACC------------------------ACCCGCACCTGCCTCCAACTCTACACC-----TGTCTCCTCCTGCA---CCT----------------GT-A-----------------------------------------------------------TCC-TCATCCC-C----------A-----AAAGAGCACTGTTCGCTTCCTAAGCAAACTGGTGATTGCAGCGAACGCCTCGCC
droBip1 scf7180000396424:657511-657907 - GACGGAGCACGCTTGCAACTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCAGATTTACTT---T--------GTTGTGGTTTCTTTTACTG---------------GGT------TT-TGGGATTATTTATCGGA----TATGCCTTGCCT-AAGGTTATAAGTAGTTTTAAGCTTAA------------------------ACTTGAA---T--CTTTATCCTGGTTAACGGT-ATGTTATTCCCGCACTCTCCTTTTCCTTC---C---AA----AATGCTTGGTTACTTGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGTTATGCTGGCCACCTGACTCC-ACC------------------ACCCGCACCTGC------CTCCAACTCTACACC-----TGTCTCCTCCTGCA---CCT----------------TT-A-----------------------------------------------------------TCCTTCGTCCCCC----------AA-----AAGAGCACTGCTCGCTGCCTAAGCAAACTGGTGATTGCAGCGAACGCCTCGCC
dp5 2:10175076-10175506 + GACGGAGCACGCCTGCAGCTACAGTTGTCGCCAGCCGGGCGTACTCAAAGGTTTGGGATCTGATCTATTTCCATCT------TTCGTTTTACC-TGTTCTG------------T--ACT------AT-TGGGG--AGTTACCGGC----AATGTGTTGCTT-GGGGTTATTGTTAGTCTTAAGCTTAA------------------------GCCTGAT---T--CTCTATCCTGGTTAACGGT-ATGTTCTTCCTACACTCTCCTTTTCCTCC---T---------ATTGCTTGA--ACTTGGTT-TATTGT--ATGCGCATGATTGCTTGCTTGGTTACTTGCTATGCCGAATACCCGTATCCGAACACCCGTTCCGTATCCTGAATCTACACCTGC---------------------ATCC-------TTCCTGCA---CCTACCACCT---------------------ACCACCTATGACCCACCACCACCAAC-----------A--CCACCAA---------------------------AA--CCTCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACGGCACGCC
droPer2 scaffold_0:10306292-10306722 - GACGGAGCACGCCTGCAGCTACAGTTGTCGCCAGCCGGGCGTACTCAAAGGTTTGGGATCTGATCTATTTCCATCT------TTCGTTTTACC-TGTTCTG------------T--ACT------AT-TGGGG--AGTTACCGGC----AATGTGTTGCTT-GGGGTTATTGTTAGTCTTAAGCTTAA------------------------GCCTGAT---T--CTCTATCCTGGTTAACGGT-ATGTTCTTCCTACAATCTCCTTTTCCTCC---T---------ATTGCTTGA--ACTTGGTT-TATTGT--ATGCGCATGATTGCTTGCTTGGTTACTTGCTATGTCGAATACCCGTATCCGAACACCCGTTCCGTATCCTGAATCTACACCTGC---------------------ATCC-------TTCCTGCA---CCTACCACCT---------------------ACCACCTATGACCCACCACCACCAAC-----------A--CCACCAA---------------------------AA--CCTCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACGGCACGCC
droWil2 scf2_1100000004902:9028816-9029189 - CACCGAACATGCCTGCTCCTATAGCTGTCGTCAACCGGGCGTACTTAAAGGTTTGATCTCC--TCAACTACTAACTTAGTTTGTATCTATTTATT-----A---------------GTT-------T-GGGGTCTTGTT-----T----AATAT-TTGCTT-GGGCTTAT------TGTTAAGCTATT------------------------ACTTAAT---TTCTTTTATCCTGGTTAACGGTTATGTTTTTCCCACAATTTCCTTCCT-----------------ATTGCTTGGTCTATTGGTTAAATTGT--ATGCGCATGATTGCTTC-----TTACTTCTTACC-TG--CA--------------------------CCTGAACCTGAACCTGA---------------------ACCCGACTT---CCCCACA---CCAAACA-----------------A----ACTCCTCCTGTCA----------------------------CTTA---C---------------------------AACCACCCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACAGCATGCC
droVir3 scaffold_12822:3796274-3796617 - dvi_2760 CACTGAACACGCTTGTAGCTACAGCTGTCGCCAACCTGGAGTGCTTAAAGGTTTGAGATTTAATTTGTTT---A--------TTTACCGTGGTTTG-GTAG---------------CGT------AA-TGTG------TATTAGC----AATGTTTTGCCTTGGGATAGATTTAAGATTTAAGCATGA------------------------ACTTTTT---A--TTTTATCCTGGCTAATGGT-ATGTTTTTCC-ACGATTTCCTTTCCT-----------------TTGCTTGGCT----------TTTGT--CTGTGCATGATTGCTTG-----CTACTTGCTATC--TATAA--------------------------CCTGAA-------------------------------------------CTCCTGCA---CGT------------------TA-----------------------------------------------------------TCC-TCGCCTCACACGTACACACAT--ACTCAGAGCAATGCTCACTGCCTAAGCAAACCGGTGATTGCAGCGAGAAACATGCC
droMoj3 scaffold_6540:17105497-17105863 - TACTGAACACGCTTGCATCTACAGTTGTCGACAGCCCGGAGTTCTGAAAGGTTTGAGAATTAATGTATTT---A------------TGTACCCTTGGCTCGGG-------------GAA------GA-TCTGTG----TAATGTC----AATGT-TTGCCT-TAGTT------TAGCTTTAAGCATGACTTTATTTTATTATTTTTGTTTTTATATTTT---A--TTTTATCCTGGTTAACGGT-ATGATTTTTTTATTTTTTATTATT-TACT---A---TC-C--TTTGCTTGGTG----------TTTGG--TAATGCATGAATGCCTG-----TTGCTTGCTATCTT---------------------------------------------------------------------ATCCTGAT---CCCCTGCA---CGC------------------TC-----------------------------------------------------------TGT--TGTTCCGCATCCTTACACAA--ACATAGAGCAATGCTCCTTGCCTAAGCAAACCGGTGATTGCAGCGAGAAACATGCC
droGri2 scaffold_14906:1388777-1389141 - CACGGAACATGCCTGCAGTTACAGCTGTCGCCAGCCTGGTGTGCTTAAAGGTTTGAGATTTCATATATTT---A--------TT-----TACCATGGATTGGTATCG---------TTT-----TAT-TTATTATATGTATTAGT----AATGTCTTGTCT-AGGTTTAAGCTTTATTTTA--CTTTA------------------------CGTTATT---A--TTTTATCCTGGTTAACGGT-ATATTTTTT-TACAATTTCATTTTAT-----------------TTGCTTGACT----------TTTGT--CTGTGCATGGTTGTTTG-----TTGCTTGCTATATCCTACA--------------------------CTTACATCTATA---------------------------CCCTGAA---CTCCTGCA---CGT------------------TA-----------------------------------------------------------TAC-TCGTAACACACACAAACACAC--TCCCAGAGCAATGCTCACTGCCTAAGCAAACCGGTGATTGCAGCGAGAATCATGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------ATGGTGGTGCCATGAATTG---------------GGT------AA-TGGGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------GCCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTCTCCCCC---A---AA-A--ATTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTTTGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTTCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGCTTCCTAAGCAAACTGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..CGGAACATGCCTGCAACTACAACTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400400000000000000
.ACGGAACATGCCTGCAACTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................GATTGCTTG-----TTACTTGCTTTGCCGACT............................................................................................................................................................................................................................................................2711.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGATTGCAGTGAAAAGCTGGC.2511.00100100000000000000
droSec2
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------ATGGTGGTGCCATGAATTG---------------GGT------TA-TGGGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------ACCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCCAACTTTCCTTCTCCCCC---A---AA-A--ATTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTCCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGATTCCTAAGCAAACTGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------GCTATGGTGCCTTGAGTTG---------------GGT------AA-TGAGACTAGTTGTATGC----AATATTTTGCTT-GGGTTAATGAGTTATTTTAAGCTTAA------------------------ACCTCCT---G--GTTTTTCCTGGCTAACGGT-ATGTTCTTCCCAAACGTTCCTTCTCCCCC---A---AA-A--ACTGCTTGGTTACT----A-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCCTCCTGCA---CCA----------------AA--CA------------------------CCTTCACC-----------ATCCCA---C---------------------------AA--CCCCAGACCGCTGTGCGCTCCCTAAGCAAACTGGTGATTGCAGTGAAAAACTGGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................GTTTGAGATCAGATTTAGTA---T--------GCTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000
...............................CAGCCCGGCGTGCTTAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAGCAAACTGGTGT...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTATGGTGCCTTGAGTTG---------------GGT------AA-TGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CCCCAGACCGCTGTGCG.......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CTGCAACTACAACTGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TT-GGGTTAATGAGTTATTTTAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGGTGATTGCAGT............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTTTGAGATCAGATTTAGTA---T--------GCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCTTG-----TTACTTGCTATGCC................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTTGCTT-GGGTTAATGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................CTAGTTGTATGC----AATATTTTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GCTATGGTGCCTTGAGTTG---------------GGT------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........ATGCCTGCAACTACAACTGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCCTAAGCAAACTGGTGATTGCA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCAGCCCGGCGTGCTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACTGCCGCCAGCCCGGCGTGCTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGCTT-GGGTTAATGAGTTATTTTAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................CTTGAGTTG---------------GGT------AA-TGAGACTAGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAACTGGTGATTGCAGTG...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCTGCAACTACAACTGCCGCCAGCCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................GGCGTGCTTAAAGGTTTGAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGGTGATTGCAGTGAAAAAC.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AGCCCGGCGTGCTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTCCTGGCTAACGGT-ATGTTCT...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..................................................GTTTGAGATCAGATTTAGTA---T--------GCTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGGAACATGCCTGCAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTTGTGG-----------------------------T------AA-TGGGATTGGTTGTATGC----AATATTATGCTT-GGGGTAATGGGTTATTTTAAGCTTAA------------------------GCATCCT---G--GTTTCTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA-------AC-A--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTTCCT---------------------ATTCCGAATCTGCACCCGC---------------------ATCCAAATCTCTTCCTGCA---CCA----------------AC--CA------------------------CCTGCACC-----------ATCCCA---C---------------------------CA--CCCCAGACCGCTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCTGTGCGCTTCCTAAGC.............................2212.0022000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTGTGCGCTTCCTAAGCAAACC........................2511.0010100000
..................CTACAACTGCCGCCAGCCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCTGTGCGCTTCCTAAG..............................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTGCGCTTCCTAAGCAAACC........................2411.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAAGCAAACCGGTGA...................1811.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGTGATTGCAGTGA..........1811.0010000010
..........................GCCGCCAGCCGGGCGTGCTTAAAGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
...................TACAACTGCCGCCAGCCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
............................CGCCAGCCGGGCGTGCTTAAAGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGAAAAGCTGGC.1811.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAACCGGTGATTGCAGTGAAAA.......2511.0011000000
....GAACATGCCTGCAACTACAACTGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................AACTGCCGCCAGCCGGGCGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
CACGGAACATGCCTGCAGCTACAACTGTCGCCAGCCCGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTGGCGGTGCCTTGAGTTG---------------GCT------AA-TGGGCTTAGTTGTATGC----TATTTTATGCTT-GGGTTAATGAGTTATTTTAAGCCTAA------------------------ACCTTCT---G--ATTTCTCCTGGCTAACGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA---AAAAAA-A--ACTGCTTGGTTACC----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGACTT--------------------------TCCGAATCTGCACCCGC---------------------ATCCGAATCTCTTCCTGCA---CCA----------------AA--CA------------------------CCTCCACC-----------GTCCCA---C---------------------------AA--ACCCAGACCGCTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTGCAGTGAAAAGCT....2012.00200000110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCTGTGCGCTTCCTA................................1911.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGCTGTGCGCTTCCTAAGCAAAC.........................2711.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---C---------------------------AA--ACCCAGACCGCTGTGCGCTT....................................2511.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGGTGATTGCAGTGAAA........2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTGCAGTGAAAAGCTGGC.2311.00100100000000
...........................................................................................................................................................................................................................................................................TTCCCCA---AAAAAA-A--ACTG............................................................................................................................................................................................................................................................................................................................1820.50110000000000
droEug1
GACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------GTTGTGGTGACTTGAATTG---------------GGT------AA-TGGGATTAGTTGTATGC----AACGTTCTGCTT-GGGTTTATGAATAGTTTTAAGCTTGA------------------------ATCCCTT---G--GTTCATCCTGGTTAATGGT-ATGTTCTTCCCAAACTTTCCTTTTCCCCA---A---AA-A--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTATTTGCTATGCCGACTT--------------------------CCTGAATCTGCACCCGC---------------------ATCCGAATTTCCTCCTGCA---CCA----------------AA---A------------------------CATCCAAC-----------ATCCCA---C---------------------------GA--CCCCAGATCATTGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotal
No Reads
droBia1
CACGGAACATGCCTGCAACTACAACTGCCGCCAGCCTGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------TTCGTGGTGCCTTGAATGG---------------GGTAATGGTAA-TGGGACTAGTTGTTTGC----AACGTTATGCTT-TGGTTTATGAGTATCTTTAAGCTTAA------------------------ACCCTTT---G--GTTTCTCCTGGTTAACGGT-ATGTTCTTCCCACACTTTCCTTCTCCCCC---G---AAAA--ACTGCTTGGTTACT----T-TATTGT--ATGTGCATGATTGCTTG-----TTACTTGCTATGCCGATCT--------------------------CCTGAATCTGCACCCGC---------------------ATTCGAATCTCCTCCTGCACCACCA----------------AA--CA------------------------CCTCCACC-----------ATCCTA---T---G-----------------------AA--TCCCAGACCGCTGTGCGCTCCCTAAGCAAGCCGGTAATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotal
No Reads
droTak1
GACGGAACACGCCTGCAACTACAACTGCCGCCAGCCTGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---C--------TTTGTGGTGTCTTGAATGG---------------GGTAAAGGTAA-TGGGATTAGTTGTATGC----AACGTTATGCTT-TGGTTTATGAGTAATTTTAAGCTTGA------------------------TCCTCTT---G--GTTTCTCCTGGTTAACGGT-ATGTTCTTCCCAAACTTTCCTTCTCC------------------TGCTTGGTTACT----T-TACTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCCGACCT--------------------------CCTGAATCTACACCTGC---------------------AACCGAATCTCCTCCTGCA---CCAACCACCAAAACACCAAAC--CA------------------------CCTCCACT-----------ATCCCA---CTATG-----------------------AA--TCCCAGACCAATGTGCGCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotal
No Reads
droEle1
AACGGAACACGCCTGCAACTACAACTGCCGCCAACCGGGCGTGCTTAAAGGTTTGAGATCAGATTTAGTA---T--------ATTGCGGTGGCTTGTTTGG---------------GTT------AA-TGGGTTTAATTGTATGC----AATGTTTTGCTT-GGATCTATAAGTATTTTTAAGCTTGA------------------------ACCTCTC---T--GCTTATCCTGGTTAACGGT-ATCTTTTTCCCCCACTTTCCTTTTCCCAA---A---AA-AACAATGCTTGGTTACTTCTTT-TGTTGA--ATGCGCATGATTGCTTG-----TTATTTGCTATGCCGACTT--------------------------TCTGAATCTGCACCCGC---------------------AACCGATCCTCCTCCTGCA---CCC---------------------ACCGAT-ACCTT------CCCACCACCACCACC-----------A--CCACCAC---------------------------CG--ACCCAGACCACTGTGCTCTTCCTAAGCAAACCGGTGATTGCAGTGAAAAGCTGGCCSizeHit CountTotal NormTotal
No Reads
droRho1
GACGGAACATGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTTAAAGGTTTGAGATCTGATTTAGTA---T--------GTTGCGGTGTCTTGTATTG---------------GTT------AA-TGGGTTTAGTTGTAAGC----AATTTGTTGCTT-GGGCCTATGATTAGTTTTAAGTTTGA------------------------ACCTCTT---T--GTCTATCCTGGTTAACGGT-ATGTTTTTC-CACACTTTCCTTCTCCCCA---A---AAAA--ATGGCTTGGTTACTTCTTT-AATTGT--ATGTGCATGACTGCTTG-----CTACTTGCTATACCGACTT--------------------------TCTGAATGTGCTCCCGC---------------------AACCGAATCTCCTCCCGCA---CC---------------------CACCGTT-ACCAT------CCCACCACC----------------------A---C---------------------------CA--CCCCAGATTACTGTGCGCTTCCTAAGCAAACTGGTGATTGCAGCGAAAAGCTGGCCSizeHit CountTotal NormTotal
No Reads
droFic1
GACGGAACACGCCTGCAACTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCTGATATATTC---C--------GCTGCGGTGTCTTGTATTG---------------GGA------AA-TGGGTTTAAATGCATGC----TATGTATTGCTC-GGTTTTACGAGTAGTTTTAAGCTTGA------------------------TCCTTTT---G--TTTCATCCTGGTTAACGGT-ATGTTCTTCCCAAACTTTCCTCCTCCCTCTTCG---AA-A--ACTGCTTGGTTACATGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCCGACTTCCCGAA--------------------TCTGAATCCGCACCCGC---------------------AACCGAATA-CCCCCTGCA---CCCAACACCT-----CC--AC--CA------------------------CCTCCACC-----------ACCCCACGAC---------------------------CA--TCCCAGACCAATGTGCGCTTCCTAAGCAAACCGGTGATTGCAGCGAGAAACTGGCCSizeHit CountTotal NormTotal
No Reads
droKik1
GACGGAACACGCCTGCAGCTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCTGATTTACTA---TGT-GG---TT-----TGTCT--TACTT------GTACTGTGGGGT------AGTTGGGATT-GTTA--TGGCCTATAAGCCTTGCTT-GGGTTCTTACATATTCTTAAGCTTGA------------------------TCCTCCTGATT--GCTTTTCCTGGCTAATGGT-ATGTTCTTCCCACACTTTCCTTCTCCCAC---G---AA-A--CTTGCTTGGTTACTTGGTT-TATTGTCTATGCGCATGATTGCTTG-----TTACTTGTTATGCCGAACT--------------------------CCTGAATCTGCACCCGA---------------------A------CC--TTCCT-CA---TCA----------------CC--CA------------------------CCTCCACGCCCACGTCCATGT-CCACCA--ATGAAC-CCATC--------------CA--ACCCAGACCAATGCTCGCTTCCTAAGCAAACCGGTGATTGCAGCGAACGGCTCGCCSizeHit CountTotal NormTotal
No Reads
droAna3
GACGGAGCACGCTTGCAACTACAACTGCCGTCAGCCGGGCGTGCTCAAAGGTTTGAGATCAGATCTATTT---A--------ATTGTGATTTCTTTTACTG---------------GGT------AT-TGGGATTAGTTATCGGA----TATGTCTTGCTT-TGGGTTATAAGTAGTTCTAAGCTTAA------------------------ACTTGAA---T--CTTTATCCTGGTTAACGGT-ATGTTATTCCCGCACTCTCCTTTTCCTTC---C---AA----AATGCTTGGTTTCTTGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGCTATGCTGACCACCTGAATCC-ACC------------------------ACCCGCACCTGCCTCCAACTCTACACC-----TGTCTCCTCCTGCA---CCT----------------GT-A-----------------------------------------------------------TCC-TCATCCC-C----------A-----AAAGAGCACTGTTCGCTTCCTAAGCAAACTGGTGATTGCAGCGAACGCCTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCCTAAGCAAACTGGTGATTGC...............2611.001010000
.........................TGCCGTCAGCCGGGCGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................AACTACAACTGCCGTCAGCCGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...GGAGCACGCTTGCAACTACAACTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGTTCGCTTCCTAAGCAAACTGGT.....................2811.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTTCGCTTCCTAAGCA............................2011.001010000
............TTGCAACTACAACTGCCGTCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................CAACTGCCGTCAGCCGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................TGCCGTCAGCCGGGCGTGCTCAAAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
GACGGAGCACGCTTGCAACTACAACTGCCGCCAGCCGGGCGTGCTCAAAGGTTTGAGATCAGATTTACTT---T--------GTTGTGGTTTCTTTTACTG---------------GGT------TT-TGGGATTATTTATCGGA----TATGCCTTGCCT-AAGGTTATAAGTAGTTTTAAGCTTAA------------------------ACTTGAA---T--CTTTATCCTGGTTAACGGT-ATGTTATTCCCGCACTCTCCTTTTCCTTC---C---AA----AATGCTTGGTTACTTGGTT-TATTGT--ATGCGCATGATTGCTTG-----TTACTTGTTATGCTGGCCACCTGACTCC-ACC------------------ACCCGCACCTGC------CTCCAACTCTACACC-----TGTCTCCTCCTGCA---CCT----------------TT-A-----------------------------------------------------------TCCTTCGTCCCCC----------AA-----AAGAGCACTGCTCGCTGCCTAAGCAAACTGGTGATTGCAGCGAACGCCTCGCCSizeHit CountTotal NormTotal
No Reads
dp5
GACGGAGCACGCCTGCAGCTACAGTTGTCGCCAGCCGGGCGTACTCAAAGGTTTGGGATCTGATCTATTTCCATCT------TTCGTTTTACC-TGTTCTG------------T--ACT------AT-TGGGG--AGTTACCGGC----AATGTGTTGCTT-GGGGTTATTGTTAGTCTTAAGCTTAA------------------------GCCTGAT---T--CTCTATCCTGGTTAACGGT-ATGTTCTTCCTACACTCTCCTTTTCCTCC---T---------ATTGCTTGA--ACTTGGTT-TATTGT--ATGCGCATGATTGCTTGCTTGGTTACTTGCTATGCCGAATACCCGTATCCGAACACCCGTTCCGTATCCTGAATCTACACCTGC---------------------ATCC-------TTCCTGCA---CCTACCACCT---------------------ACCACCTATGACCCACCACCACCAAC-----------A--CCACCAA---------------------------AA--CCTCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACGGCACGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.ACGGAGCACGCCTGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020100010000
.............................GCCAGCCGGGCGTACTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020100010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCAGCGAACGGCACGC.2020.5010100000000
.....................CAGTTGTCGCCAGCCGGGCGTACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000010000
GACGGAGCACGCCTGCAGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGTGATTGCAGCGAACGGC.....2420.5010000000001
............CTGCAGCTACAGTTGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTGATTGCAGCGAAC........2020.5010100000000
.................GCTACAGTTGTCGCCAGCCGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
...............................CAGCCGGGCGTACTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
...............................CAGCCGGGCGTACTCAAAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000010000
.............................GCCAGCCGGGCGTACTCAAAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................CCGAATACCCGTATCCGAACACCCGTTC......................................................................................................................................................................................................................................2820.5010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGATTGCAGCGAA.........1820.5010000010000
droPer2
GACGGAGCACGCCTGCAGCTACAGTTGTCGCCAGCCGGGCGTACTCAAAGGTTTGGGATCTGATCTATTTCCATCT------TTCGTTTTACC-TGTTCTG------------T--ACT------AT-TGGGG--AGTTACCGGC----AATGTGTTGCTT-GGGGTTATTGTTAGTCTTAAGCTTAA------------------------GCCTGAT---T--CTCTATCCTGGTTAACGGT-ATGTTCTTCCTACAATCTCCTTTTCCTCC---T---------ATTGCTTGA--ACTTGGTT-TATTGT--ATGCGCATGATTGCTTGCTTGGTTACTTGCTATGTCGAATACCCGTATCCGAACACCCGTTCCGTATCCTGAATCTACACCTGC---------------------ATCC-------TTCCTGCA---CCTACCACCT---------------------ACCACCTATGACCCACCACCACCAAC-----------A--CCACCAA---------------------------AA--CCTCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACGGCACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................CAGTTGTCGCCAGCCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
......................AGTTGTCGCCAGCCGGGCGTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.ACGGAGCACGCCTGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.......................GTTGTCGCCAGCCGGGCGTACTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droWil2
CACCGAACATGCCTGCTCCTATAGCTGTCGTCAACCGGGCGTACTTAAAGGTTTGATCTCC--TCAACTACTAACTTAGTTTGTATCTATTTATT-----A---------------GTT-------T-GGGGTCTTGTT-----T----AATAT-TTGCTT-GGGCTTAT------TGTTAAGCTATT------------------------ACTTAAT---TTCTTTTATCCTGGTTAACGGTTATGTTTTTCCCACAATTTCCTTCCT-----------------ATTGCTTGGTCTATTGGTTAAATTGT--ATGCGCATGATTGCTTC-----TTACTTCTTACC-TG--CA--------------------------CCTGAACCTGAACCTGA---------------------ACCCGACTT---CCCCACA---CCAAACA-----------------A----ACTCCTCCTGTCA----------------------------CTTA---C---------------------------AACCACCCAGAGCAATGCTCACTTCCTAAGCAAACTGGTGATTGCAGCGAACAGCATGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............CTCCTATAGCTGTCGTCAACCGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00330000
............CTGCTCCTATAGCTGTCGTCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000
.............TGCTCCTATAGCTGTCGTCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
......................AGCTGTCGTCAACCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................CCTATAGCTGTCGTCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.................CCTATAGCTGTCGTCAACCGGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
......ACATGCCTGCTCCTATAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................AACCGGGCGTACTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGATTGCAGCGAACAGCA....2211.00100010
...................TATAGCTGTCGTCAACCGGGCGTACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...............CTCCTATAGCTGTCGTCAACCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
CACTGAACACGCTTGTAGCTACAGCTGTCGCCAACCTGGAGTGCTTAAAGGTTTGAGATTTAATTTGTTT---A--------TTTACCGTGGTTTG-GTAG---------------CGT------AA-TGTG------TATTAGC----AATGTTTTGCCTTGGGATAGATTTAAGATTTAAGCATGA------------------------ACTTTTT---A--TTTTATCCTGGCTAATGGT-ATGTTTTTCC-ACGATTTCCTTTCCT-----------------TTGCTTGGCT----------TTTGT--CTGTGCATGATTGCTTG-----CTACTTGCTATC--TATAA--------------------------CCTGAA-------------------------------------------CTCCTGCA---CGT------------------TA-----------------------------------------------------------TCC-TCGCCTCACACGTACACACAT--ACTCAGAGCAATGCTCACTGCCTAAGCAAACCGGTGATTGCAGCGAGAAACATGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGGTGATTGCAGCGAGA........2112.002000000000100000001000000000000000000000000000000000000000000000
.....................CAGCTGTCGCCAACCTGGAGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002001000000000000000000010000000000000000000000000000000000000000
................AGCTACAGCTGTCGCCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........GCTTGTAGCTACAGCTGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................A--------------------------CCTGAA-------------------------------------------CTCCTGCA---CGT------------------T...............................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGCTCACTGCCTAAG..............................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGGTGATTGCAGCGAGAAAC.....2411.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTGATTGCAGCGAGAAACA....2311.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGGTGATTGCAGCGA..........1911.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTGAA-------------------------------------------CTCCTGCA---CGT------------------TA-----------------------------------------------------------TCC-T..............................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCGGTGATTGCAGCGAGAAA......2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAATGCTCACTGCCTAA...............................2111.001001000000000000000000000000000000000000000000000000000000000000
........ACGCTTGTAGCTACAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................CCTGGCTAATGGT-ATGTT.....................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
...TGAACACGCTTGTAGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................TAAGCATGA------------------------ACTTTTT---A--TC............................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
TACTGAACACGCTTGCATCTACAGTTGTCGACAGCCCGGAGTTCTGAAAGGTTTGAGAATTAATGTATTT---A------------TGTACCCTTGGCTCGGG-------------GAA------GA-TCTGTG----TAATGTC----AATGT-TTGCCT-TAGTT------TAGCTTTAAGCATGACTTTATTTTATTATTTTTGTTTTTATATTTT---A--TTTTATCCTGGTTAACGGT-ATGATTTTTTTATTTTTTATTATT-TACT---A---TC-C--TTTGCTTGGTG----------TTTGG--TAATGCATGAATGCCTG-----TTGCTTGCTATCTT---------------------------------------------------------------------ATCCTGAT---CCCCTGCA---CGC------------------TC-----------------------------------------------------------TGT--TGTTCCGCATCCTTACACAA--ACATAGAGCAATGCTCCTTGCCTAAGCAAACCGGTGATTGCAGCGAGAAACATGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................GTTGTCGACAGCCCGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCTTGCCTAAGCAAACCGGTG....................2711.001100000
droGri2
CACGGAACATGCCTGCAGTTACAGCTGTCGCCAGCCTGGTGTGCTTAAAGGTTTGAGATTTCATATATTT---A--------TT-----TACCATGGATTGGTATCG---------TTT-----TAT-TTATTATATGTATTAGT----AATGTCTTGTCT-AGGTTTAAGCTTTATTTTA--CTTTA------------------------CGTTATT---A--TTTTATCCTGGTTAACGGT-ATATTTTTT-TACAATTTCATTTTAT-----------------TTGCTTGACT----------TTTGT--CTGTGCATGGTTGTTTG-----TTGCTTGCTATATCCTACA--------------------------CTTACATCTATA---------------------------CCCTGAA---CTCCTGCA---CGT------------------TA-----------------------------------------------------------TAC-TCGTAACACACACAAACACAC--TCCCAGAGCAATGCTCACTGCCTAAGCAAACCGGTGATTGCAGCGAGAATCATGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................CAGCTGTCGCCAGCCTGGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/19/2015 at 12:36 AM