ID:

dsi_29037

 Coordinate:

2r:17726057-17726324 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.4

Flybase annnotation

exon [2r_17726325_17726535_+]; CDS [2r_17726325_17726535_+]; exon [2r_17725488_17726056_+]; CDS [2r_17725488_17726056_+]; intron [2r_17726057_17726324_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTCTGATGTGGAACAGGACGACGAGGAGCAAGTGCGCCACAACGATGCGGTAAGTATCAGATTCAGGTTTTTTATTGATGTTCCGCATGCGAAGTACATTACACCCGGTCTCCCAATATGTTGCAATTATGAATTCAAAAACGTACTTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTCGAGAACTGTAAGTGCATGACTATTTCTATGGTTTCCATCTTATGTCTGCCATTTTGCTTGTGTAAATCTTGCGCTTTGAATGACACTCAATATTAAATAGTTAAATAATTCGTCTTATTTATTTTAGGAAATTAACTATAGATCGGCTCCCACCGAGCGTACTCCAATCCTTCCACG
************************************************************************************************************************************...........((((((..(((((....((((((((.(((....))).))).))))))))))......)))))).***************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.......TGTGGAACAGGACGACGAGGAGCAAG............................................................................................................................................................................................................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0 0 0
....TGATGTGGAACAGGACGACGAGGAG................................................................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 1 0 0
.......TGTGGAACAGGACGACGAGGAGCA................................................................................................................................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TATTTCCGCCATTTCGCTTGTGT.................................................................................................................. 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0
.......TGTGGAACAGGACAACGAGGAGCAA................................................................................................................................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GAACAGGACGACGAGGAGCAAGTGCG........................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........TGGAACAGGACGACGAGGA.................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................AGTTTCGGATCCAGGTTTTTTA..................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0
....................GACGAGGAGCAAGTGCGCC......................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.......TGTGGAACAGGACGACGAGGAGCAA................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................AATTCAAAAACGTACTTTGCTCGGCG.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................ACTTCGAGAACTGTAAGTGCA................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....TAATGTGGAACAGGACGACG........................................................................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TGAAATTAACTATAGATCGGCCAC........................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................AAAAACGTACTATCGTCGGC................................................................................................................................................................................................................... 20 3 4 0.75 3 0 0 3 0 0 0 0 0 0
.........................................................................................................................................AAAAACGTACTATCCTCGGCA.................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................AAGTACACTAGACCCGGCCT................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................CGAACTTTGCTCGGCGTTTG.............................................................................................................................................................................................................. 20 2 5 0.40 2 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................ATCAGTTTTGGGTTGGAC...................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TTGATTGTGTAAATCATGC......................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................TAATTCGGCTTATTTA........................................................ 16 1 16 0.06 1 0 0 0 0 1 0 0 0 0
....TGATGTAGAACAAGGCGAC......................................................................................................................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................................CGGGTCCCACCGGGCG.................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................GCCTTCGGGAACTGTAAG..................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
AGTCTCGTGTGGAACA................................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCAGACTACACCTTGTCCTGCTGCTCCTCGTTCACGCGGTGTTGCTACGCCATTCATAGTCTAAGTCCAAAAAATAACTACAAGGCGTACGCTTCATGTAATGTGGGCCAGAGGGTTATACAACGTTAATACTTAAGTTTTTGCATGAAACGAGCCGCAATCACACACTAGTCAAAACCCATGCTGTGAAGCTCTTGACATTCACGTACTGATAAAGATACCAAAGGTAGAATACAGACGGTAAAACGAACACATTTAGAACGCGAAACTTACTGTGAGTTATAATTTATCAATTTATTAAGCAGAATAAATAAAATCCTTTAATTGATATCTAGCCGAGGGTGGCTCGCATGAGGTTAGGAAGGTGC
*****************************************************************************************************************************************************************...........((((((..(((((....((((((((.(((....))).))).))))))))))......)))))).************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.........................................................AGTCTAAGTCCAAAAAATAAC.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CAGACGGTAAAACGAACACATT................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAAAGGGAGAATACAG................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................CATAGTCTCGGTCCAA.......................................................................................................................................................................................................................................................................................................... 16 2 20 0.30 6 0 0 1 4 0 0 0 0 1
....................................................................AAAAAAGAACTACAAGACGCAC...................................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................TGCTGTGAGGTAAAATTTATC............................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
....................CTGCTCCTCGTTCACCC........................................................................................................................................................................................................................................................................................................................................... 17 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGGAGAATACAGACG................................................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0
............................................CTACGGCATGCATAGTCAA................................................................................................................................................................................................................................................................................................................. 19 3 7 0.14 1 0 0 0 0 1 0 0 0 0
.............................................................................................................AGGGGGTTATACAAAGATAAT.............................................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0
...............................................................................................................AAGGTTACACAACGTTAACAC............................................................................................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 1 0 0 0 0 0
.....................................................................................................TGTGGGCTAGAGGGT............................................................................................................................................................................................................................................................ 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0
.........................................................................ATTACTACAAGGCGT........................................................................................................................................................................................................................................................................................ 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CAATTTATTAAGCAGGAACA.......................................................... 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0
......................................................................AAAAAAACTACAAGTCCTAC...................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TGAAAAAGATACCAA................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................AGTTATAATCTATCA............................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................GGAGAATACAGAGGGT.............................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................TCTAAGTCCACAAAATT.................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:17726007-17726374 + dsi_29037 AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAAGTGCGCCACAACGATGCGGTAAGTATCAGATTCAG---GTTTTT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTCAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTCGAGAACTGTAAGTGCATGACTAT----------TTC-TA-TGGTTTCCA-----------------------------------------------------TCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTT--T-GA-------------------------------------------------AT--G-----------ACAC-TCAATA----------------------TTAAATAGT-TAAATAATTCGTCT-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCTCCCACCGAGCGTACTCCAATCCTTCCACG------
droSec2 scaffold_9:501410-501777 + AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCGGTAAGTATCAGATTCAG---GTTTTT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTAAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTGGAGAACTGTAAGTGCATGACTAT----------TTC-TA-TGGTTTCCT-----------------------------------------------------TCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTT--T-GA-------------------------------------------------AT--G-----------ACAC-TCCATT----------------------TTAAATAGT-TAAATAAATGGACA-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGTTCCCACCGAGCGTACTCCAATCCTTCCACG------
dm3 chr2R:17171567-17171936 + AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCATAACGATGCGGTAAGTATCAGATTCAG---ATTTTT---CATT-----------------------------------------------GATG-----TTCCGCATGCGATGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGATTTCAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGAAACTTCGAGAACTGTAAGTGCATGACTAT----------TTC-CA-TGGTTTTCT-----------------------------------------------------TGTTATGTCTGCCATT-TTTGCTTATGTAAATCTTGCGCTT--T-GC-------------------------------------------------AC--G-----------CCAC-TCCATT----------------------TTAAATAGT-TTAAAAATTCGTCT-TATTT---------------------------------------TATTTTAGG---AAATCAACTATAGATCTGCTCCCACCGAACGTACTCCAATCCTTCCACG------
droEre2 scaffold_4845:11315592-11315958 + AGTCAGATGAGGAACA---------GG------ATGACGAGGAGCAGGGGCGACACAACGATGCCGTAAGTATCAGATTCAG---GTT-TT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAAAT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCACGGCGTTAGTATGTGGTCAATTTTGGGTACGGCACTTCGAAAACTGTAAGTGCAATACTAT----------ATG-TT-TGGCTTCC------------------------------------------------------TGTTCTGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTT--T-GC-------------------------------------------------CC--G-----------CTTC-TCGCTT----------------------TTAAATGGT-TTACTAATTCGTCG-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCGCCCACCGAGCGCACTCCAATCCTTTCACG------
droYak3 2R:12016437-12016805 - AGTCTGATGAGGAACA---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGATTCAG---GCT-TT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAATT--A-TGATTTCTA-AAACTTAC------------------------------------TTTGCACGGCGTTAGTATGTGATCAATTTTGGGTACGACACTTCGAAAACTGTAAGTGCACGACTAT----------ATG-TT-TGGCTTCCT-----------------------------------------------------TGTTATGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTA--T-TTA------------------------------------------------AC--A-----------CTTC-TCGATG----------------------TTAAATGGC-TTAATAATTCGTCG-TAT-T---------------------------------------CATTTTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTTCCACG------
droEug1 scf7180000409474:771151-771521 - AGTCCGATGACGAACA---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATTACTTGCAG---TTT-TTATTTATT-----------------------------------------------GATG-----TTCTGCGTGCGGTGTATATTACCTATGGTCTCTCCATTATGTTGCGATT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCTCGGTCGTAGTTTGTGGTCAAAATGGGGTACGACTCTTCGGAAACCGTAAGTGCATGAATAT----------ATG-TT-TGCTTTTCT-----------------------------------------------------CGTTGTGTTGGCCAAT-ATTGCTTGTGTACATTTTGCGCTG--T-TC-------------------------------------------------TT--T-----------GCCC-TTGGTT----------------------TTAAATAGA-AAGCTCATGTGTTT-CT--C---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGTACTCCAATCCTTTCTCG------
droBia1 scf7180000302143:1237125-1237491 - ATTCGGATGAGGAACC---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTCCAG---TTT-CT---GATT-----------------------------------------------GGTG-----TTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTCCGCTT--T-TGATTTCAA-AAACGTAC------------------------------------TTTGCTCGGCGGTAGTTTGTGGTCAAATTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGATTGT----------ATG-TT-TGCTTGTCT-----------------------------------------------------AGTTCTGTTGGCCACT--TCGCTTGTGTAAATCTCGCGCTT--T-GC-------------------------------------------------TC--G-----------GCTC-TCAATT----------------------TTAAGTAGA-AGGCTCATTTGACA-CA--A---------------------------------------TTTTGCAGG---AAATCAACTATAGGCCGACGCCCACCGAACGCACACCAATTCTTCCTCG------
droTak1 scf7180000415722:53864-54221 + AGTCGGACGAGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAATTCCAC---TTT-TC-CACATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTGCGATT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCTCGGCGGTAGTTTGTGGTCAGTTTGGGGTACGAGTCGCCGGAAACCGTAAGTGCATGACTT-----------------------TCCT-----------------------------------------------------TCTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTT--T-TC-------------------------------------------------TC--G-----------TCTC-TCAATT----------------------GTAAATAGA-ATACTGATTTGTCT-CA--T---------------------------------------GCTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGCACTCCAATCCTTGCTCG------
droEle1 scf7180000491232:205589-205942 - AGTCGGATGAGGAGCA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTGCAA---TTC-TT---GATT-----------------------------------------------GATG-----TTCCGCATGCAGCGT--------------------ATTATGTTGCAACTATA-TAATTTCTA-AAACGTAC------------------------------------ATTGCTCGGCCGTAGTGTGTGGTCAGTTTGGGGTACGACTCTTCCGAAACCGTAAGTGCATGACAGT----------CTG-TT-TGCTTTTCA-----------------------------------------------------CGGTGTGTTGGCCACT--CCGCTTGTGTACATTTCGCGCTT--TTGC-------------------------------------------------CC--A-----------GTCC-CCAATT----------------------TGCAACAAA-AGACTTATTTTA--------ATTTCACTA------------------------------TTTTGTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTCACGCG------
droRho1 scf7180000780265:201164-201508 - AGTCGGATGACGAACA---------GG------ACGACGAAGAGCAAGTGCGCCACAACGATGCCGTAAGTATCAGTTTCAG---TTT-TT---GAAA-----------------------------------------------AATA-----TTCCGCATGCGGCGT--------------------ATTATATAGCGACT--A-TAATTTCTA-AAACGTAC------------------------------------TTTGCTTGGCCGTAGTTTGTGGTCAGTTTTGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTGT----------CTT-TT-TGCTTTTCA-----------------------------------------------------CGTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTT--T-CC-----------------------------------------------------G-----------ACCC-TTGACT----------------------TCAAACGAA-AGTCTCATTTGTTT-AA--C---------------------------------------TTTTGCAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCTATCCTCACGCG------
droFic1 scf7180000453811:98004-98354 - AGTCTGACGAGGAGCA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTTCCG---TTT-TT---AATT-----------------------------------------------GATG-----TTCCGCATGCGG------------CC-GTCTTCCCATTATGCTGGGATT--T-TAATTTCTA-AGA---AA------------------------------------CTTGCTCGGCCGTAGTATGTAGTCAATTTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTTT----------CTG-TT-TGCTTTTTA-----------------------------------------------------CGTTGTGCTGGTCAGT--TCGCTTGTGTAAATATTGCGCTT--A-GC-------------------------------------------------AT--G-----------GATT-TTCCCT----------------------CAAAACGGA-ACACTTATTTGTCT-TA--C---------------------------------------ATTTTTAGG---AAATCAATTATAGATCGGTGCCCACCGAGCGCACTCCAATCCTGGCTCG------
droKik1 scf7180000302682:51922-52306 - AATCGGATCAGGAGGAT---CATGGGG------ATGATGAAGAGCAAATACGACACAATGATGCTGTGAGTATGAAGGGTAGCAGTGCTCC---TATGGCGCTCTTTTGTATT--------A----------------------------------------------T--------------------TTTATGTTGCTGTT--G-TGATTTCTT-AACTAAACTA-----AC------------------GT-------TTTGCTCGGCCTTAGTGTGTGGTCAGTTTGGGTTACGGCTCTTCGGAAACTGTAAGTGCATGAAATCGTGGAATCTCTCA-GCTTGCTTTGT-------------------------------------------------------CGATTATT-----TA--TGGCTTTTGTACATTTGGCGCTT--T-GATATAG--------------------------------------CTATAA----A----T------G--C-TTATTT-----------TTT-A----GGGTAAATGAG-TAACAAAATTTT-G-TAC-T---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCACCCACCGAACGCACTCCCATTCTGGCCCGTTCAGC
droAna3 scaffold_13266:4971040-4971407 + AATCGGATGAGGAGCA---------GG------ATGACGAGGAACAGGTGCGCCACCAAGATGCCGTAAGTATCTGTTACAG---TTCCCT---AATC-----------------------------------------------GCCG-----TT--------GTAGCTCC-TGCATCC-GCCTCCCCATTTCTTTGCAATT--T-TAATTTCAA-AATTATCCTC-----AC--------------------------ATTTTCCCGGCCATAGTTGGTGGCCAGTACGGGGTACGGCTACTCGGAAATCGTAAGTGCAATCATAT----------CTG-TT-TGGTTTTTG-----------------------------------------------------AGGGTTGCAGTCCAGTCTTTGCTTTTGTATAATTCGCGCTT--A-AC---------------------------------------------AC--GT--G----T------GTCC-TTGTTT----------------------TGAAAAGAA-AAACTAACTATTTC-TA--T---------------------------------------TTCTGCAGG---AGATCAGCTACAGATCACCGCCCACCGAGCGCACTCCGATCCTCTCCCG------
droBip1 scf7180000395751:780892-781262 + AGTCGGACGAGGAGCA---------CG------ACGACGAGGAACAGGTGCGCCACCAAGATGCGGTAAGTATCGGTTCCAG---TTC-TC---GATC----CT-----------------------------------------G------------GCACTCTTAGCTCCT-GCTTCC-GCGCCCCCATT-CTTTGCAATT--T-TAATCCCCA-AATTATCCTC-----GA--------------------------ATTCTCCCGGCCGTAGTGTGTGGTCAGTACGGGGCACGGCTACTCGGAAATCGTAAGTGCTATCATAT----------CTG-TT-TGGTTTTTG-----------------------------------------------------GAGGTTGCTGTCCAGTCCCTGCTTTTGTAATATTCGCGCTT--C-CA----------------------------------------------CACCT--G-----------CCCC-TGGGTT------------T---------TGGAAAGAA-AATCTCACTTGTTTCTG--T---------------------------------------TCCTACAGG---AGATCAACTACCGATCACCGCCCACCGAGCGCACTCCCATCCTGGCCCG------
dp5 3:3640258-3640648 + ACTCGGACGAGGAGCA---------TG------GCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCCTT-----------------------TC-------------GGCAATTATGCTGATTCAAGCGAGAACCAATGGCCTCCTCCGCATGT-----TCAGATAGTCCGAATTC-CCTATTTTTGGAGAAT--T-TAATTTCTT-AAGTGTATCC-----AT------------------GTTCGCGTGTTTGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTCA----------GTG-TT-TGCTTTCC------------------------------------------------------------------CTAA--TGGCTTCTGTAATATTTGCGCGCTTT-GAC------------------------------------------CCACGA----A----T------ATCCAC-------------------------GAATCAATCAATAATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACACCAACGGAGCGCACACCAATCTTGGCTCG------
droPer2 scaffold_2:3830498-3830887 + ACTCGGACGAGGAGCA---------TG------GCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCCTT-----------------------TC-------------GGCAATTATCCTGATTCAAGCGAGAACCAATAGCCTCCTCCGCATGT-----TCAGATAGTCCGAATTC-CCTATTTTTGGAGATT--T-TAATTTCTT-AAGTGTATCC-----AT------------------GTTCGCGTGTTTGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTCA----------GTG-TT-TGCTTTCC------------------------------------------------------------------CTAA--TGGCTTCTGTAATATTTGCGCGCTTT-GAC------------------------------------------CCACAA----A----T------ATCCAC-------------------------GAATCAATCAA-AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACGCCAACGGAACGCACACCAATCTTGGCTCG------
droWil2 scf2_1100000004513:14321-14383 + ATCTATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGG---ATATCATTTACAGACCAGTGCCAACTGAACGCACTCCCATTTTGGCCAG------
droVir3 scaffold_12875:14359441-14359847 + dvi_6850 AATCGGATGTGGACCATGACGATGATG------ACGATGAGGAACAGGCGCGTCACACCGAAGCCGTAAGTATTTAATG------TTC-TC---GCTT----TC-------------AGCAATT----------------------------------------GTTG--------------------------CTTGCATTT--T-TGACTTTTT-ATTTAAATAAAATACACA---CTCATCTCAA--ATAATTTGCCGTATGC-CTGC-GCAGTTTTATGCCCAGTCCGTTTATGCCGCCCAACAAACCGTAAGTGCATGCATCC---------CACA-TT-TGTCTT-TT-----------------------------------------------------CCATGTGTC-----GT--ACGCTTCTGTGTTTGTTGCGCCT--C-TTCA--GCTA--------------------ATTCTTTATAAATCT------GTAT-TATATGTCCGA----------TTCGCTTTGTGCTTC-TGCTCATAT----TGA-TTACATACATTT----T--T---------------------------------------CCCTGCAGGATCAGGTTAGCTATCGCCCAGCGCCCACCGAACGCACCCCCATCCTGTCACG------
droMoj3 scaffold_6496:9820627-9821038 + dmo_1065 AATCGGATGCGGACAACGACGATGATGCCGACAATGATGAGGAGCAAGCGCGTCGCAGCGAAGCTGTGAGTATACCTGGCTTTTGTGCTCT---T--------------CCAATTTCAGC-------------------------------------------------------------------------TATTGCATTT--TATGATTTCG-----------------------CTCATCTAAT--ATAATTCGAC----GCACGGC--CAGTTTTATGCACAGTCCTTTTATGCCGTACCGCAAACCGTAAGTGCATGTCTAT--CG-----AGTGCTA-TGTCCT----------------------------------------------------------TTCTAATCGCTAGT-------TTTGTACGTGTGCCGCTT--C-TTAACTGCTTACTGTATTTGCTGTAGAATATATATATATAAATCT------GTGTATATATG---------------------------------------------------------TTA--------ATTATATTATTTTGATACGCTCATTAACAATTTTATTATCCACGCAGGATCAGGTCAGCTTTCGTTCACCGGCCACTGAGCGTACGCCCATTCTGGCTGG------
droGri2 scaffold_15245:14342779-14343222 + AATCCGATGCGGAAAACGGTGATGATG------ATGATGAGGAACAGGCGCGCCACAGCGAAGCCGTGAGTATTTCTAC------------------T-----CATTTACCCA--------AT----------------------CCAG--------------------------------------------TTTTGCATTT--T-TGATTTCTTCAACTAAATTAAACACACAATACTCATTCAAACCAAAATTTGGCGTATGCTCG--CGCAGTTTTTTAGCCATTCCGGTTATGCTGAATATCAAACCGTAAGTGCATGCATCC---------AGCAAAT-TGCTTTTTCCCGTGTGTTATACGCTCTCCTCTCTCTTTCTCTCTCTCTCTATTTGTGTTGTGTGGTATCCTAGACAGT--TCTCTTTTCTACAAATATTAATA--T-AT---------------------------------------------AT--GT--A----T------A----TCCATTTAATATTGACCTAGTTACTTATAT----T---AATTGTATATTTCT---------------------------------------------AACTGCAGGATCAAGTCAGCTATAGACCCTTGCCCACTGAGCGCACCCCCATCCTGACACG------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAAGTGCGCCACAACGATGCGGTAAGTATCAGATTCAG---GTTTTT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTCAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTCGAGAACTGTAAGTGCATGACTAT----------TTC-TA-TGGTTTCCA-----------------------------------------------------TCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTT--T-GA-------------------------------------------------AT--G-----------ACAC-TCAATA----------------------TTAAATAGT-TAAATAATTCGTCT-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCTCCCACCGAGCGTACTCCAATCCTTCCACG------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......TGTGGAACA---------GG------ACGACGAGGAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000000000050000
....TGATGTGGAACA---------GG------ACGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000010000010000
.......TGTGGAACA---------GG------ACGACGAGGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000002000
...........GAACA---------GG------ACGACGAGGAGCAAGTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.........TGGAACA---------GG------ACGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
...................................GACGAGGAGCAAGTGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.......TGTGGAACA---------GG------ACGACGAGGAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................AATTCAA-AAACGTAC------------------------------------TTTGCTCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
............................................................................................................................................................................................................................................................................................................ACTTCGAGAACTGTAAGTGCA...............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
droSec2
AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCGGTAAGTATCAGATTCAG---GTTTTT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTAAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTGGAGAACTGTAAGTGCATGACTAT----------TTC-TA-TGGTTTCCT-----------------------------------------------------TCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTT--T-GA-------------------------------------------------AT--G-----------ACAC-TCCATT----------------------TTAAATAGT-TAAATAAATGGACA-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGTTCCCACCGAGCGTACTCCAATCCTTCCACG------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCCACCGAGCGTACTCC..................2111.0010010
............................................CAGGTGCGCCACAACGATGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................AGGAGCAGGTGCGCCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
AGTCTGATGTGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCATAACGATGCGGTAAGTATCAGATTCAG---ATTTTT---CATT-----------------------------------------------GATG-----TTCCGCATGCGATGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGATTTCAA-AAACGTAC------------------------------------TTTGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGAAACTTCGAGAACTGTAAGTGCATGACTAT----------TTC-CA-TGGTTTTCT-----------------------------------------------------TGTTATGTCTGCCATT-TTTGCTTATGTAAATCTTGCGCTT--T-GC-------------------------------------------------AC--G-----------CCAC-TCCATT----------------------TTAAATAGT-TTAAAAATTCGTCT-TATTT---------------------------------------TATTTTAGG---AAATCAACTATAGATCTGCTCCCACCGAACGTACTCCAATCCTTCCACG------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......TGTGGAACA---------GG------ACGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATAGATCTGCTCCCACCGAACGT.......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GG------ACGACGAGGAGCAGGTGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............AACA---------GG------ACGACGAGGAGCAGGTGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000
...............................................GTGCGCCATAACGATGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GAGGAGCAGGTGCGCCATAACGATGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACA---------GG------ACGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACTCCAATCCTTCCA........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A---------GG------ACGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........GAACA---------GG------ACGACGAGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TGGTTTTCT-----------------------------------------------------TGTTATGTCTG..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCCACCGAACGTACTCCAA................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTCCCACCGAACGTAC.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................GAGGAGCAGGTGCGCCATAACGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCACCGAACGTACTCCA.................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GG------ACGACGAGGAGCAGGTGCGCCATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................GG------ACGACGAGGAGCAGGTGCGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...CTGATGTGGAACA---------GG------ACGACGAGGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATGTGGAACA---------GG------ACGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................G------ACGACGAGGAGCAGGTGCGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGATGTGGAACA---------GG------ACGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGTACTCCAATCC.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGAACA---------GG------ACGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGATGTGGAACA---------GG------ACGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................GTGCGCCATAACGATGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGATGTGGAACA---------GG------ACGACGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............A---------GG------ACGACGAGGAGCAGGTGCGCCATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.......TGTGGAACA---------GG------ACGACGAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....TGATGTGGAACA---------GG------ACGACGAGGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CA---------GG------ACGACGAGGAGCAGGTGCGCCATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGGAACA---------GG------ACGACGAGGAGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GATGTGGAACA---------GG------ACGACGAGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGATGTGGAACA---------GG------ACGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................GG------ACGACGAGGAGCAGGTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................TGCGCCATAACGATGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAACA---------GG------ACGACGAGGAGCAGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....GATGTGGAACA---------GG------ACGACGAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGCAGGTGCGCCATAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACA---------GG------ACGACGAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGTACTCCAATCCTTCCAC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACA---------GG------ACGACGAGGAGCAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......TGTGGAACA---------GG------ACGACGAGGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....TGATGTGGAACA---------GG------ACGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............AACA---------GG------ACGACGAGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GG------ACGACGAGGAGCAGGTGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................AGGTGCGCCATAACGATGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..........................G------ACGACGAGGAGCAGGTGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGATGTGGAACA---------GG------ACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................GTAC------------------------------------TTTGCTCGGCGTTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........TGGAACA---------GG------ACGACGAGGAGCAGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........TGGAACA---------GG------ACGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................GCAGGTGCGCCATAACGATGCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTTGCTCGGCGTTAGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGCGATGTACATTACACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------TTAAATAGT-TTAAAAA.......................................................................................................................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGTCAGATGAGGAACA---------GG------ATGACGAGGAGCAGGGGCGACACAACGATGCCGTAAGTATCAGATTCAG---GTT-TT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAAAT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCACGGCGTTAGTATGTGGTCAATTTTGGGTACGGCACTTCGAAAACTGTAAGTGCAATACTAT----------ATG-TT-TGGCTTCC------------------------------------------------------TGTTCTGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTT--T-GC-------------------------------------------------CC--G-----------CTTC-TCGCTT----------------------TTAAATGGT-TTACTAATTCGTCG-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCGCCCACCGAGCGCACTCCAATCCTTTCACG------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......TGAGGAACA---------GG------ATGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0065000100
.......TGAGGAACA---------GG------ATGACGAGGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0064000200
.......TGAGGAACA---------GG------ATGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0033000000
.......TGAGGAACA---------GG------ATGACGAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0022000000
..TCAGATGAGGAACA---------GG------ATGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACCGAGCGCACTCCA.................1911.0010000100
...CAGATGAGGAACA---------GG------ATGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...................................GACGAGGAGCAGGGGCGACACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
......ATGAGGAACA---------GG------ATGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............CA---------GG------ATGACGAGGAGCAGGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGATCGGCGCCCACCGAGCGCAC.....................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTATAGATCGGCGCCCACCG............................2311.0011000000
........GAGGAACA---------GG------ATGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGGCGCCCACCGAGCGCAC.....................2411.0011000000
.....GATGAGGAACA---------GG------ATGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGATCGGCGCCCACCGAGCGCA......................2511.0011000000
.....................................................................................................................................................................................................................................................................TTTGCACGGCGTTAGTATGTGGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGGCGCCCACCGAGCGCACTCC..................2711.0011000000
........GAGGAACA---------GG------ATGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.......TGAGGAACA---------GG------ATGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......TGAGGAACA---------GG------ATGACGAGGAGCAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
droYak3
AGTCTGATGAGGAACA---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGATTCAG---GCT-TT---TATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAATT--A-TGATTTCTA-AAACTTAC------------------------------------TTTGCACGGCGTTAGTATGTGATCAATTTTGGGTACGACACTTCGAAAACTGTAAGTGCACGACTAT----------ATG-TT-TGGCTTCCT-----------------------------------------------------TGTTATGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTA--T-TTA------------------------------------------------AC--A-----------CTTC-TCGATG----------------------TTAAATGGC-TTAATAATTCGTCG-TAT-T---------------------------------------CATTTTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTTCCACG------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCGGCGCCCACCGAGCGTACTCC..................26110.0010000000000010
.......TGAGGAACA---------GG------ATGACGAGGAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00303000000000
....TGATGAGGAACA---------GG------ATGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCCACCGAGCGTACTCCAATCC.............2611.00101000000000
..TCTGATGAGGAACA---------GG------ATGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000
.......TGAGGAACA---------GG------ATGACGAGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..................................TGACGAGGAGCAGGTGCGCCACAACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........GGAACA---------GG------ATGACGAGGAGCAGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............A---------GG------ATGACGAGGAGCAGGTGCGCCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACTATAGATCGGCGC..................................2011.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCCACCGAGCGTACTCCAATCC.............2811.00101000000000
.................................ATGACGAGGAGCAGGTGCGCCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTCGTCG-TAT-T---------------------------------------CATTTTAGA---.......................................................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--A-----------CTTC-TCGATG----------------------TTAAATGGC-..............................................................................................................................2211.00100100000000
................................................................................................................................................................................................................................................................................................TTTGGGTACGACACTTCGA.............................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................ATCAATTTTGGGTACGACACT.................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
AGTCTGATGAGGAACA---------GG------ATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
AGTCCGATGACGAACA---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATTACTTGCAG---TTT-TTATTTATT-----------------------------------------------GATG-----TTCTGCGTGCGGTGTATATTACCTATGGTCTCTCCATTATGTTGCGATT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCTCGGTCGTAGTTTGTGGTCAAAATGGGGTACGACTCTTCGGAAACCGTAAGTGCATGAATAT----------ATG-TT-TGCTTTTCT-----------------------------------------------------CGTTGTGTTGGCCAAT-ATTGCTTGTGTACATTTTGCGCTG--T-TC-------------------------------------------------TT--T-----------GCCC-TTGGTT----------------------TTAAATAGA-AAGCTCATGTGTTT-CT--C---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGTACTCCAATCCTTTCTCG------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTCGGATGAGGAACC---------GG------ATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTCCAG---TTT-CT---GATT-----------------------------------------------GGTG-----TTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTCCGCTT--T-TGATTTCAA-AAACGTAC------------------------------------TTTGCTCGGCGGTAGTTTGTGGTCAAATTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGATTGT----------ATG-TT-TGCTTGTCT-----------------------------------------------------AGTTCTGTTGGCCACT--TCGCTTGTGTAAATCTCGCGCTT--T-GC-------------------------------------------------TC--G-----------GCTC-TCAATT----------------------TTAAGTAGA-AGGCTCATTTGACA-CA--A---------------------------------------TTTTGCAGG---AAATCAACTATAGGCCGACGCCCACCGAACGCACACCAATTCTTCCTCG------SizeHit CountTotal NormTotal
No Reads
droTak1
AGTCGGACGAGGAACA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAATTCCAC---TTT-TC-CACATT-----------------------------------------------GATG-----TTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTGCGATT--T-TGATTTCTA-AAACGTAC------------------------------------TTTGCTCGGCGGTAGTTTGTGGTCAGTTTGGGGTACGAGTCGCCGGAAACCGTAAGTGCATGACTT-----------------------TCCT-----------------------------------------------------TCTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTT--T-TC-------------------------------------------------TC--G-----------TCTC-TCAATT----------------------GTAAATAGA-ATACTGATTTGTCT-CA--T---------------------------------------GCTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGCACTCCAATCCTTGCTCG------SizeHit CountTotal NormTotal
No Reads
droEle1
AGTCGGATGAGGAGCA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTGCAA---TTC-TT---GATT-----------------------------------------------GATG-----TTCCGCATGCAGCGT--------------------ATTATGTTGCAACTATA-TAATTTCTA-AAACGTAC------------------------------------ATTGCTCGGCCGTAGTGTGTGGTCAGTTTGGGGTACGACTCTTCCGAAACCGTAAGTGCATGACAGT----------CTG-TT-TGCTTTTCA-----------------------------------------------------CGGTGTGTTGGCCACT--CCGCTTGTGTACATTTCGCGCTT--TTGC-------------------------------------------------CC--A-----------GTCC-CCAATT----------------------TGCAACAAA-AGACTTATTTTA--------ATTTCACTA------------------------------TTTTGTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTCACGCG------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTCGGATGACGAACA---------GG------ACGACGAAGAGCAAGTGCGCCACAACGATGCCGTAAGTATCAGTTTCAG---TTT-TT---GAAA-----------------------------------------------AATA-----TTCCGCATGCGGCGT--------------------ATTATATAGCGACT--A-TAATTTCTA-AAACGTAC------------------------------------TTTGCTTGGCCGTAGTTTGTGGTCAGTTTTGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTGT----------CTT-TT-TGCTTTTCA-----------------------------------------------------CGTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTT--T-CC-----------------------------------------------------G-----------ACCC-TTGACT----------------------TCAAACGAA-AGTCTCATTTGTTT-AA--C---------------------------------------TTTTGCAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCTATCCTCACGCG------SizeHit CountTotal NormTotal
No Reads
droFic1
AGTCTGACGAGGAGCA---------GG------ACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGTTTCCG---TTT-TT---AATT-----------------------------------------------GATG-----TTCCGCATGCGG------------CC-GTCTTCCCATTATGCTGGGATT--T-TAATTTCTA-AGA---AA------------------------------------CTTGCTCGGCCGTAGTATGTAGTCAATTTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTTT----------CTG-TT-TGCTTTTTA-----------------------------------------------------CGTTGTGCTGGTCAGT--TCGCTTGTGTAAATATTGCGCTT--A-GC-------------------------------------------------AT--G-----------GATT-TTCCCT----------------------CAAAACGGA-ACACTTATTTGTCT-TA--C---------------------------------------ATTTTTAGG---AAATCAATTATAGATCGGTGCCCACCGAGCGCACTCCAATCCTGGCTCG------SizeHit CountTotal NormTotal
No Reads
droKik1
AATCGGATCAGGAGGAT---CATGGGG------ATGATGAAGAGCAAATACGACACAATGATGCTGTGAGTATGAAGGGTAGCAGTGCTCC---TATGGCGCTCTTTTGTATT--------A----------------------------------------------T--------------------TTTATGTTGCTGTT--G-TGATTTCTT-AACTAAACTA-----AC------------------GT-------TTTGCTCGGCCTTAGTGTGTGGTCAGTTTGGGTTACGGCTCTTCGGAAACTGTAAGTGCATGAAATCGTGGAATCTCTCA-GCTTGCTTTGT-------------------------------------------------------CGATTATT-----TA--TGGCTTTTGTACATTTGGCGCTT--T-GATATAG--------------------------------------CTATAA----A----T------G--C-TTATTT-----------TTT-A----GGGTAAATGAG-TAACAAAATTTT-G-TAC-T---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCACCCACCGAACGCACTCCCATTCTGGCCCGTTCAGCSizeHit CountTotal NormTotal
No Reads
droAna3
AATCGGATGAGGAGCA---------GG------ATGACGAGGAACAGGTGCGCCACCAAGATGCCGTAAGTATCTGTTACAG---TTCCCT---AATC-----------------------------------------------GCCG-----TT--------GTAGCTCC-TGCATCC-GCCTCCCCATTTCTTTGCAATT--T-TAATTTCAA-AATTATCCTC-----AC--------------------------ATTTTCCCGGCCATAGTTGGTGGCCAGTACGGGGTACGGCTACTCGGAAATCGTAAGTGCAATCATAT----------CTG-TT-TGGTTTTTG-----------------------------------------------------AGGGTTGCAGTCCAGTCTTTGCTTTTGTATAATTCGCGCTT--A-AC---------------------------------------------AC--GT--G----T------GTCC-TTGTTT----------------------TGAAAAGAA-AAACTAACTATTTC-TA--T---------------------------------------TTCTGCAGG---AGATCAGCTACAGATCACCGCCCACCGAGCGCACTCCGATCCTCTCCCG------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................TGACGAGGAACAGGTGCGCCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................ACAGGTGCGCCACCAAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAGATCACCGCCCACCGAGCGCAC.....................2911.001100000
...........................................................................................................................................................T--------GTAGCTCC-TGCATCC-GCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................TGACGAGGAACAGGTGCGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............AGCA---------GG------ATGACGAGGAACAGGTGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCGCCCACCGAGCGCACTC...................2411.001010000
..............CA---------GG------ATGACGAGGAACAGGTGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
AGTCGGACGAGGAGCA---------CG------ACGACGAGGAACAGGTGCGCCACCAAGATGCGGTAAGTATCGGTTCCAG---TTC-TC---GATC----CT-----------------------------------------G------------GCACTCTTAGCTCCT-GCTTCC-GCGCCCCCATT-CTTTGCAATT--T-TAATCCCCA-AATTATCCTC-----GA--------------------------ATTCTCCCGGCCGTAGTGTGTGGTCAGTACGGGGCACGGCTACTCGGAAATCGTAAGTGCTATCATAT----------CTG-TT-TGGTTTTTG-----------------------------------------------------GAGGTTGCTGTCCAGTCCCTGCTTTTGTAATATTCGCGCTT--C-CA----------------------------------------------CACCT--G-----------CCCC-TGGGTT------------T---------TGGAAAGAA-AATCTCACTTGTTTCTG--T---------------------------------------TCCTACAGG---AGATCAACTACCGATCACCGCCCACCGAGCGCACTCCCATCCTGGCCCG------SizeHit CountTotal NormTotal
No Reads
dp5
ACTCGGACGAGGAGCA---------TG------GCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCCTT-----------------------TC-------------GGCAATTATGCTGATTCAAGCGAGAACCAATGGCCTCCTCCGCATGT-----TCAGATAGTCCGAATTC-CCTATTTTTGGAGAAT--T-TAATTTCTT-AAGTGTATCC-----AT------------------GTTCGCGTGTTTGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTCA----------GTG-TT-TGCTTTCC------------------------------------------------------------------CTAA--TGGCTTCTGTAATATTTGCGCGCTTT-GAC------------------------------------------CCACGA----A----T------ATCCAC-------------------------GAATCAATCAATAATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACACCAACGGAGCGCACACCAATCTTGGCTCG------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...CGGACGAGGAGCA---------TG------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1716.0060000000006
...CGGACGAGGAGCA---------TG------GCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030100000002
......................................GAGGAGCAAGTGCGCCACAACGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................GACGAGGAGCAAGTGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
ACTCGGACGAGGAGCA---------TG------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...CGGACGAGGAGCA---------TG------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.CTCGGACGAGGAGCA---------TG------GCGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
...CGGACGAGGAGCA---------TG------GCGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.....GACGAGGAGCA---------TG------GCGACGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...CGGACGAGGAGCA---------TG------GCGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.CTCGGACGAGGAGCA---------TG------GCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....GGACGAGGAGCA---------TG------GCGACGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......CGAGGAGCA---------TG------GCGACGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.CTCGGACGAGGAGCA---------TG------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................GCATTTCGGAAACCGTAAGTG.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTACAGATCGACACCAACGGA...........................2611.0010100000000
...................................................................AAGTATTCCCTT-----------------------TC-------------GGCAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACGGAGCGCACACCAA................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCACACCAATCTTGGCT........1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGCGCACACCAATCTTG...........2111.0010100000000
....................................................................................................................................................................................................................................................................................................GGTATGGCATTTCGGAAACC........................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.CTCGGACGAGGAGCA---------TG------GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
ACTCGGACGAGGAGCA---------TG------GCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCCTT-----------------------TC-------------GGCAATTATCCTGATTCAAGCGAGAACCAATAGCCTCCTCCGCATGT-----TCAGATAGTCCGAATTC-CCTATTTTTGGAGATT--T-TAATTTCTT-AAGTGTATCC-----AT------------------GTTCGCGTGTTTGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTCA----------GTG-TT-TGCTTTCC------------------------------------------------------------------CTAA--TGGCTTCTGTAATATTTGCGCGCTTT-GAC------------------------------------------CCACAA----A----T------ATCCAC-------------------------GAATCAATCAA-AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACGCCAACGGAACGCACACCAATCTTGGCTCG------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGATCGACGCCAACG.............................1912.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACAGATCGACGCC.................................1812.002200000
.................................GCGACGAGGAGCAAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...CGGACGAGGAGCA---------TG------GCGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................AAGTGCGCCACAACGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droWil2
ATCTATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGG---ATATCATTTACAGACCAGTGCCAACTGAACGCACTCCCATTTTGGCCAG------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGACCAGTGCCAACTGAACGCAC.....................2612.00202000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGCACTCCCATTTTGGCCA.......2311.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACCAGTGCCAACTGAACGCAC.....................2511.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGACCAGTGCCAACTGAACGCACTC...................2911.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGCACTCCCATTTTGGCCAG------2411.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGACCAGTGCCAACTGAACGCACT....................2711.00110000
droVir3
AATCGGATGTGGACCATGACGATGATG------ACGATGAGGAACAGGCGCGTCACACCGAAGCCGTAAGTATTTAATG------TTC-TC---GCTT----TC-------------AGCAATT----------------------------------------GTTG--------------------------CTTGCATTT--T-TGACTTTTT-ATTTAAATAAAATACACA---CTCATCTCAA--ATAATTTGCCGTATGC-CTGC-GCAGTTTTATGCCCAGTCCGTTTATGCCGCCCAACAAACCGTAAGTGCATGCATCC---------CACA-TT-TGTCTT-TT-----------------------------------------------------CCATGTGTC-----GT--ACGCTTCTGTGTTTGTTGCGCCT--C-TTCA--GCTA--------------------ATTCTTTATAAATCT------GTAT-TATATGTCCGA----------TTCGCTTTGTGCTTC-TGCTCATAT----TGA-TTACATACATTT----T--T---------------------------------------CCCTGCAGGATCAGGTTAGCTATCGCCCAGCGCCCACCGAACGCACCCCCATCCTGTCACG------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----TGA-TTACATACATTT----T--T---------------------------------------CCCTGCAG...........................................................2712.002000000000000000000000000000020000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------CCATGTGTC-----GT--ACGCTTCT...............................................................................................................................................................................................................................................................2012.002000000200000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................C-----GT--ACGCTTCTGTGTTTGTTG.....................................................................................................................................................................................................................................................2112.002000001000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTATCGCCCAGCGCCCA...............................2112.002000000100000000000000000000100000000000000000000000000000000000
...................CGATGATG------ACGATGAGGAACAGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTAT-TATATGTCCGA----------TTCGCT.........................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGCCCACCGAACGCACCC...................2211.001000000000000000100000000000000000000000000000000000000000000000
...................................GATGAGGAACAGGCGCGTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTT----T--T---------------------------------------CCCTGCAGGATCAG.....................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------CCATGTGTC-----GT--ACGCTTCT...............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........TGGACCATGACGATGATG------ACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................CGATGATG------ACGATGAGGAACAGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
......................TGATG------ACGATGAGGAACAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTATCGCCCAGCGCCC................................2111.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTGCGCCT--C-TTCA--......................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................TG------TTC-TC---GCTT----TC-------------AGCAATT----------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................T-TGTCTT-TT-----------------------------------------------------CCATGTGTC-----GT--A......................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................C---GCTT----TC-------------AGCAATT----------------------------------------GTTG--------------------------CTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
......ATGTGGACCATGACGATGATG------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..................ACGATGATG------ACGATGAGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGCACCCCCATCCT............2111.001000000000000000000000000000010000000000000000000000000000000000
.......................GATG------ACGATGAGGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AACAAACCGTAAGTGCATGCA...........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCGCCCAGCGCCCACCGAACG........................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................TG------ACGATGAGGAACAGGCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTTATGCCGCCCAACAAACCG.......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...................CGATGATG------ACGATGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.502000000000001010000000000000000000000000000000000000000000000000
................TGACGATGATG------ACGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.131000000000000000000000000000001000000000000000000000000000000000
droMoj3
AATCGGATGCGGACAACGACGATGATGCCGACAATGATGAGGAGCAAGCGCGTCGCAGCGAAGCTGTGAGTATACCTGGCTTTTGTGCTCT---T--------------CCAATTTCAGC-------------------------------------------------------------------------TATTGCATTT--TATGATTTCG-----------------------CTCATCTAAT--ATAATTCGAC----GCACGGC--CAGTTTTATGCACAGTCCTTTTATGCCGTACCGCAAACCGTAAGTGCATGTCTAT--CG-----AGTGCTA-TGTCCT----------------------------------------------------------TTCTAATCGCTAGT-------TTTGTACGTGTGCCGCTT--C-TTAACTGCTTACTGTATTTGCTGTAGAATATATATATATAAATCT------GTGTATATATG---------------------------------------------------------TTA--------ATTATATTATTTTGATACGCTCATTAACAATTTTATTATCCACGCAGGATCAGGTCAGCTTTCGTTCACCGGCCACTGAGCGTACGCCCATTCTGGCTGG------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................TACCTGGCTTTTGTGCTCT---T--------------CCAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTCACCGGCCAC..............................1811.001100000
...........................................GCAAGCGCGTCGCAGCGAAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGAGCGTACGCCCATTCTGG..........2411.001000001
........................................GGAGCAAGCGCGTCGCAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTTCACCGGCCACTGAGCGT.......................2611.001100000
........................ATGCCGACAATGATGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................................GCAAGCGCGTCGCAGCGAAGCTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................................GATGAGGAGCAAGCGCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGTACGCCCATTCTGG..........2111.001000001
........................................................................TACCTGGCTTTTGTGCTCT---T--------------CC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............................................CAAGCGCGTCGCAGCGAAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
AATCCGATGCGGAAAACGGTGATGATG------ATGATGAGGAACAGGCGCGCCACAGCGAAGCCGTGAGTATTTCTAC------------------T-----CATTTACCCA--------AT----------------------CCAG--------------------------------------------TTTTGCATTT--T-TGATTTCTTCAACTAAATTAAACACACAATACTCATTCAAACCAAAATTTGGCGTATGCTCG--CGCAGTTTTTTAGCCATTCCGGTTATGCTGAATATCAAACCGTAAGTGCATGCATCC---------AGCAAAT-TGCTTTTTCCCGTGTGTTATACGCTCTCCTCTCTCTTTCTCTCTCTCTCTATTTGTGTTGTGTGGTATCCTAGACAGT--TCTCTTTTCTACAAATATTAATA--T-AT---------------------------------------------AT--GT--A----T------A----TCCATTTAATATTGACCTAGTTACTTATAT----T---AATTGTATATTTCT---------------------------------------------AACTGCAGGATCAAGTCAGCTATAGACCCTTGCCCACTGAGCGCACCCCCATCCTGACACG------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:01 AM