ID:

dsi_29025

 Coordinate:

4:722947-723189 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.3 -16.1 -16.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCTTCAAACGAATGGGCCCCTCAAATGGATGTAAAGTTTAAAACAAAAGGTATGTGCATAAAAATAGACCACAGCTATGGTGTCTGCATGGCCAAAGCACACGACTTCGTCGGTCATCTTTCGCCTAGTGACTACCAGAATATCCTTGGCGATCATCTCAATGGATATGCTGGTTGTGCCTACTCGCCGACATTTCTAGACAATGCTGTGTCAGCGGCACCATTGCGGGTTTTACCGCAATCCCTGCGGTCTACCTTTTATTTAGGTCAAAATATAATTGGATTTAATGCAGACGCGGATCAGAGGGATGGACGCGGCTTCAGCACAGATCAAACAGATGCG
***********************************************************.....................((...(((..(((.((((.((.((((...))))))...)))).)))..)))))****************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR902009
testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
..........................................................................................................TTCGTCGGTCATCTTTCGCCTAGTGAC.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................TAAAAATAGACCACAGCTATGGTGTC.................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTATTTAGGTCAAAATATAATTGGATT.......................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...TTCAAACGAATGCGCCCCTCAAATGGA......................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTATTTAGGTCAAAATATAATTGGA............................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TGGATGTAAAGTTTAAAACAAAAGGTA.................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GACGCGGATCAAAGGGATGGACGCGGC........................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................TCTTTCGCCTAGTGACTACCAGAATA........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................CAAAGCACACGACTTCGTC....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................TTTAATGCAGACGCGGATCAGAGGG................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TATAATTGGATTTAATGCAGACGCGGAT.......................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTCTAGACAATGCTGTGTCAGCGGC............................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTCGCCGACATTTCTAGACA............................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................TAAAGTTTAAAACAAAAGGTATGTGCA............................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCGGGTTTTACCGCAATC.................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................TGTGCATAAAAATAGACCACAGCTATGG...................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TTTAATGCAGACGCGGATCAGAGG.................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TTGGATTTATTGAAGACG............................................... 18 2 8 0.88 7 0 0 0 0 0 0 6 0 1 0
...................................................................................................................................................TGGCGCTCATCTCGACGGATA............................................................................................................................................................................... 21 3 5 0.40 2 0 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................................................................................TGGCACCATTGAGGGTTGTA............................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CTTGGATTTATTGCAGAC................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................CTGTCAGCGGCACCA........................................................................................................................ 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CACAGATCAAAGAGA.... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TATAATTGGACTTAAT...................................................... 16 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................ATTGGATTTATTGAAGAC................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0
..................................................................TGAACACAGCTATGGTATC.................................................................................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0
...........................................ACACAAGGTATGTGGA............................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................CAATGGATATCTTGGTT....................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAGAAGTTTGCTTACCCGGGGAGTTTACCTACATTTCAAATTTTGTTTTCCATACACGTATTTTTATCTGGTGTCGATACCACAGACGTACCGGTTTCGTGTGCTGAAGCAGCCAGTAGAAAGCGGATCACTGATGGTCTTATAGGAACCGCTAGTAGAGTTACCTATACGACCAACACGGATGAGCGGCTGTAAAGATCTGTTACGACACAGTCGCCGTGGTAACGCCCAAAATGGCGTTAGGGACGCCAGATGGAAAATAAATCCAGTTTTATATTAACCTAAATTACGTCTGCGCCTAGTCTCCCTACCTGCGCCGAAGTCGTGTCTAGTTTGTCTACGC
******************************************************************************************************************************************************************************************************************.....................((...(((..(((.((((.((.((((...))))))...)))).)))..)))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................................................................................................................................................................GCGCCGAAGTCGTGTCTAGTTTGTCT.... 26 0 1 2.00 2 0 2 0 0 0 0
.............................................................................................................................................................................................................................................CGTCAGGAATGCCAGATGGA...................................................................................... 20 3 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................CTGCGCCGAAGTCGTGTCTAGTTTGTCT.... 28 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................CGTCAGGAATGCCAGATGG....................................................................................... 19 3 2 1.00 2 2 0 0 0 0 0
.........................................................................................................................AGCGGATCACTGATGGTCTTATAGGAAC.................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................................CGTCAGGAATGCCAGATGGAA..................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................GCAGCAGCAAGTAGAGAGCGGA........................................................................................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0
..........................................................................................CCCGTATCGTATGCTGAAGC......................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1
................................................................................................................................CACTGATGGTGTTATTCGAA................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1
.........................................................GTGTCTTTATCTGGTGTCTA.......................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0
...............................................................................................TTACTGTGCTGAAGCCGCCA.................................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0 0
..................................................................................................CTGTGCTGAAGCCGCCA.................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 1 0 0 0
............................................................................ATACCACAGATGTACT........................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:722897-723239 - dsi_29025 TTCTTCAAACGA------------ATGG-------------------GCCCCTCAAATGGATGTAAAGTTTAAAACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGTCATC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---GATCATCTCAATGGATATGCTGGTTGTGCCTACTCGCCGACATTTCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCCCTGCGG--------------TCTACCTTTTATTTAGGTCAAAATATA---------------ATTGGATTTAATGCAGACGCGGATCAGAGGGATGG-----------------------------A--CGCGGCTTCAGCACAGA---------------TCAAA---CAGATGCG
droSec2 scaffold_30:630849-631191 - TTCTTCAAACGA------------ATGC-------------------GCCCCTCAAATGGATGTAAAGTTTAAAACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGTCATC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---GATCATCTCAATGGATATGCTGGTTGTGCCTACTCGCCGACATTTCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCCCTGCGG--------------TCTACCTTTTATTTAGGTCAAAATATA---------------ATTGGATTTAATGCAGACGCGGATCAGAGGGATGG-----------------------------A--CGCGGCTTCAGCACAGA---------------TCAAA---CAGATGCG
dm3 chr4:923159-923501 - TTCTTCAAACGC------------ATGT-------------------GCCCCTCAAATGGATGTAAAGTTTAACACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGACGTC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGCCTACTCGTCGACATTTTTAGACAATGCT------------------------------------ATGTCATCGGCA--CCATTGCGGGTTTTACCGCAATCACCGCGG--------------TGTAGCTCTTATTTAGGTCGAAATATA---------------ATTGGATTTAATGCAGACGCGGCTCAGAGGGATGG-----------------------------A--CGCGGCTTCGACACAGA---------------TCAAA---CTGATGCG
droEre2 scaffold_4512:348435-348777 + GTCATCAAACGC------------ATGT-------------------GCCCCTCAGATGGAAACAAAGTTTAAAAAAGAAGGTACGTGCAT--------AAAAAGAGACC---A----CAGCTATGGTGTCTGCATGGCCAAGGCACACGA------------------------CTTCGACGGTCGTC---TTTCGC------CTAGTAACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGTCTACTCTTCGACAGTCCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCAGCGCGG--------------TCTAGCTTTTATTTAGGTCGAGATATA---------------ATTGGATTTAATACAGACGCGGCTCAGAGGGATGG-----------------------------A--TGCGGCTTCGGCATGGA---------------TCAAG---CTGTTGCG
droYak3 4:993688-994030 - GCCATCAAACGC------------ATGT-------------------GCCCCTCAAATGGATATAAAGTTTAAAAAAGAAGGTATGTGCAT--------GAAAAGGGAAC---A----CAGCTATGGTGTCTGCATGGCCAAGGCACACGA------------------------CTTCGACGGTCGTC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGCCTACTCGTCAACATTCCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCAGCGCGG--------------TCTAGCTTTTATTTAGGTCAAGATATA---------------ATTGGATTTAATGCAGACGCGGCTCAACGGGATGG-----------------------------A--TGCGGCTTCGGCATGGA---------------TCAAA---CTATTGCG
droEug1 scf7180000408984:299498-299849 + GTCATCAAAACC------------ATGC-------------------CCCCCTCATATGGATATAAACCTAAAAACAGAAGGTATGTGTAT--------AAAGAGAGAGC---A----ACGTCATGGTGGCTGCAAGGCCAAAGCACACGA------------------------ATGTGATCGTCACT---TTTTTC------CTGGTGATGACCAGAATATCTATGCC---GATAATATCAATGGATATACTGGTTTTGCCTTCTCATCGGCATTTCATAACAATGTA------------------------------------GTATCAGCGGCG--CCATTGCGTACCTTAGCGCAAACAGCGCGC--------------TCTAACTTTTATTTAAGTCAAGATTTT---------------TTTGAATTAAATGCAGACGTGGATCAGGCAGGAGAACTGTCGCAAT----------------------GCGACTTTGCGATGGG---------------TCAAA---CTGCTGCG
droBia1 scf7180000301495:879941-880292 - CCCATCAAAACC------------AAGT-------------------GCAACTCAAATGGACATAATTTTCAAAACGAAAGGTATGTGCAT--------AGAAAAAGACC---A----ACGCTTTGGTGTCTGCATGGCCAAGGCAGACGA------------------------ATATGACCTTCGTA---TTCTGC------CTGGTGACTACCAGAATATCTATGCC---GATAATCTCAATGGATATGCTGGTTTTGCCTACCCATCGACATTCTTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCATCGCGTGCTTTACCACAAACAAATCGG--------------TCAAGCTTTTATTTAGGTCAAGATATA---------------TTTGGATTAAATGCAGACGAGGCACAGAGGGAAGAACAGTCTAAAT----------------------GCGACTTTGGGATGGA---------------TCAAG---CTGTTACT
droTak1 scf7180000414054:5781-6132 - ATCATCAAAACC------------AAGT-------------------GCCACTCAAATGGATATGAAGTTTAAAGCGGAAGGTATGTGCGT--------AGAGAGAGACC---A----ACGCTATGGTGTCTGCATGGCCACAGCAGACGA------------------------ATATGACCGTCGTC---CTTTGC------CTGTTGACTACCAGAATATCTATGCC---AATAATCTCAATGGATATGCTGGTTTTGCCTACTCATCGACATTCCTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCATCGCGTGCTTTACCGCAAACTGCGCGG--------------TCAACTTTTTATTTAAGTCAAGATGTA---------------TTTGGATTAAATGCAGATGCGGCTCAGATGGAGGAACTGTCCCAGT----------------------GCGGCTTTGGGATGGA---------------TCAAA---CTACTGCG
droEle1 scf7180000491238:241704-242048 + ATCATCAAAACC------------AAGT-------------------GCCAGTCAAATGGATATGGAGTTCCAAAGAGAAGGTATGTGCGC--------TGAAAGAGACC---A----ACGCCATGGTGTCTGCATGGCCAAAGCACACGA------------------------ATATGACCGTCGTC---TTTTGC------CTGGTGATAACCAGCTTGTCCATGCC---AATAATCTTAATGGATATGCTGGTATTGCCTATTCATCTACATTCCTAAACAATGCA------------------------------------GTGCCAGCAGCG--CCATCGCGAGCTTTACCACAGATAGCACGA--------------TCTAGTTTTTATTTAAGCCAAGATTTA---------------TTTGGATTAAATGCAGACACGGCTCAGAGGGAGGAACTTTCGCAAT----------------------GCAGCTTTGGAATGGA---------------TCAAA---C-------
droRho1 scf7180000770477:9901-10252 + GTCATCAAAACC------------AAGT-------------------ACAACTCGAATGGATATGGATTTGAAAACTGAAGGTATGTGGTC--------AGAAAGAAACC---A----ACGCCATGGTGTCTGCATGGCCAGAGCACAAGA------------------------TTATGACCATCGTC---TTTTGC------CTGGTGATTACCAGATTGTCAATGCC---AATAATCTAAATGGATATGCAGGTTTTGCCTATTCATCGACGTTCTTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCAACGCGTGCTTTACCACAAAAAGCACGA--------------TCTAGCTTTTATTTAAGCCAAGATTTA---------------TTTGAACTGAATGCAGACGCGGCTCCGAGGGAAGACCTAATACAAT----------------------GCAGCTTTGGAATCGA---------------TCAAA---CTGTTCCC
droFic1 scf7180000454040:502319-502643 - -------------------------------------------------------AATGGATCCAAAGTTTGGCGCAGAAGGTATGTGCGT--------AGAACGAGACC---AACA-ATACCATGGAATCTGCATGGCCGAAGCACACGA------------------------AGATGACAGTCAGC---ATTCGC------TTGTTAATTACCAGCATATCCGTGCC---AATAGTTTTAAGGGATATGCCGGTTTTGCCGGCTCATCGACATTAACAAGCAAT-----------------------------------------GCCACCAACATTCCATCGCGTGCTTTGCCGCAAACAGATCGA--------------GCCAGCATTTATTTTAGTCAAGATTTA---------------TTTGGATTAAATGCAGACGCCGCTCACAGGGAAGATCTATCACAAA----------------------ATCT---CTATCTGAA---------------CAAAA---ACTTTACG
droKik1 scf7180000302171:8893-8896 + ATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12947:784878-785197 - TTAAGCAAACTA------------ATACTGGGGCATCGGAACTAAGTGC---TGCAATGG------ACTTAAAAATTGAAGGTATGTGCAT--------AAAAAGAGAAA---A----ACGCAATGGTGCCTGTACGGCCAACCCAAAAAA------------------------AACTGT------------------------------------AAATGTACACTCT---AATAATTGTTATGAATATCAAGA---TGGCTATTCATCGACTTTCTTAAAAAATAGA------------------------------------GCCTTAGCGGCA--CCATCGCGGGCATTGGAGCAATC-----------------------AAGCTTCTACTCACACCAAGGTTTA---------------TTTGGATTCACCACAGATCTAGAAGCTACAAAAGATCTGCTGAAAA----------------------GCAA---TCGTATAGC---------------CCAAC---TCGGCGGG
droBip1 scf7180000394984:4936-5248 - TTCTAGAAAACC------------GCAA-------------CTA---AGTTCTGAAATGG------ACTTAAAAATACAAGGTATGTGCAT--------AAAAAGAGAAA---A----ACGCAATGGTGTCTGCATGGCTAAAACGAATAA------------------------AGCTGT------------------------------------AAATTTACATGGT---AGTAAATGTAATGAAAATCAAGATTTTGAGTATTCATCGAATTTCTTAAAAAATAGA------------------------------------GGCGTAGCGGCA--CCATCGCGGGCATTGCAGCAAAA-----------------------GTGCGTATACTCACACCAAGGTTTA---------------TTTGGATTTACCACAGATCCCGAAGATACAAGAGATCTACTGAAAA----------------------GCAACCGAAGCACAGA---------------CCAAC---TCGGCGGG
dp5 Unknown_group_8:56897-57284 + TGTCGCGAACGGGTCGACTGTTCGAGGT-------------------GACATTGGAATGGAGATGGATCT------GGAAGGTATGTATATGTACCCGCAAAGAGAAAAC---ACCAGCCACCATGGTGCCTGCTTGCCCAAT---CATGA------------------------CAGTGCAAAAGACC---ATGGGT------CAGGCGCCTACCAGAATGTCTACGAA---AATAATCTCAATGGACATACTGGCTATG------CACCAACAATTACAGATAATAGG------------------------------------GTGCCAGCAGCA--CCATTGCGTGTCTTGCCGAGAACA---CGAGCACGACGAGTTCA--GCGCTCAAGTTTAAGTCAAAATTTA---------------TTTGATTTAAATGCAGATTCAACATACGCAGAAGATCCATCTATAG----------------------GTGACCTAACCATGACAGCACTTTGTATGGCCCCACCTACAGAGGCC
droPer2 scaffold_103:41734-42121 + TGTCGCGAACGGGTCGACTGTTCGAGGT-------------------GACATTGGAATGGAGATGGATCT------GGAAGGTATGTATATGTACCCGCAAAGAGAAAAC---ACCAGCCACCATGGTGCCTGCTTGCCCAAT---CATGA------------------------CAGTGCAAAAGACC---ATGGGT------CAGGCGCCTACCAGAATGTCTACGAA---AATAATCTCAATGGACATACTGGCTATG------CACCAACAATTACAGATAATAGG------------------------------------GTGCCAGCAGCA--CCATTGCGTGTCTTGCCGAGAACA---CGAGCACGACGAGTTCA--GCGCTCAAGTTTAAGTCAAAATTTA---------------TTTGATTTAAATGCAGATTCAACATACGCAGAAGATCCATCTATAG----------------------GTGACCTAACCATGACAGCACTTTGTATGGCCCCACCTACAGAGGCC
droWil2 scf2_1100000004943:737266-737601 + TCAG--------------------------------------------------------------ACATTGGGATGCAAGGTACGTACGC--------AAGGAGATGCAGAGGCCA-GCCGTTTGATGCACACG---------CTGACGG------------------------TGTCAAGAGTCGCA---TGTTGCCGCAGACAGTTCCCTACTCGAATGTCTACACT---AACAGCTTCAATGGACATGCTGGTGGTGCA---CCGTCAACATGCGGCAATGACAGG------------------------------------ACGCCAACGATG--CCATTGCGGGTCTTGCCTCAATTA---CGA--------------TCACGCTCTGTATTAAATCAGCAAATT---------------TTAGAGATGGATGCCTACAGGCCACATAGCAGTGGTAATTTAGGGAATAGTTTTGCCATGGTGGA--CACGGTTTCGA--CGAC---------------TGAAG---TAGCCACC
droVir3 scaffold_13052:1713072-1713471 - CTCGTCAACGAA------------ATATTCAGATG--------ATGTGCC-----------------------AATTGAAGGTACGTACAC--------CAGAAGAGGCA---A----TCGCATTGGTGTCTGCCTGCCAACCGCACCCGCGTCGTCGACGACAATAGTAATGGATAATTCAAAATATCGGATGTTACCGCACGCGGCTGCTTACCAAAATGTTCACGCTGAAAACAATCTGAATGGACATTCCGGCTATGCA------TCGA------------ATGCTGGTTTAATAGACGAGAGAATAGGTAGTTTTATTAGTTTGCCAGCGGCA--CCAATGCGGACGTTACCCGAGCCTCAGCAA---CGA--------CCCAGCTCC---TCACATCGA---TTATTTGAAGATAACAACTTAAAGGCAGATGCCTTCGGAAATCAAAACG--------------T------GCGTGATAG---CGTATCGGCTACACTA-GGG---------------TCAG-------CCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCTTCAAACGA------------ATGG-------------------GCCCCTCAAATGGATGTAAAGTTTAAAACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGTCATC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---GATCATCTCAATGGATATGCTGGTTGTGCCTACTCGCCGACATTTCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCCCTGCGG--------------TCTACCTTTTATTTAGGTCAAAATATA---------------ATTGGATTTAATGCAGACGCGGATCAGAGGGATGG-----------------------------A--CGCGGCTTCAGCACAGA---------------TCAAA---CAGATGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................TTCGTCGGTCATC---TTTCGC------CTAGTGAC.........................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................................................................................T--------AAAAATAGACC---A----CAGCTATGGTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTATTTAGGTCAAAATATA---------------ATTGGATT...........................................................................................................2711.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTATTTAGGTCAAAATATA---------------ATTGGA.............................................................................................................2511.00100000001000000000
.........................................................TGGATGTAAAGTTTAAAACAAAAGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................TC---TTTCGC------CTAGTGACTACCAGAATA...............................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...........................................................................................................................................CAAAGCACACGA------------------------CTTCGTC.......................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGCAGACGCGGATCAGAGGG....................................................................................2511.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATA---------------ATTGGATTTAATGCAGACGCGGAT...........................................................................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................................TTTCTAGACAATGCT------------------------------------GTGTCAGCGGC............................................................................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................TACTCGCCGACATTTCTAGACA................................................................................................................................................................................................................................................................2211.00100000000010000000
...............................................................TAAAGTTTAAAACAAAAGGTATGTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................GCGGGTTTTACCGCAATC..................................................................................................................................................................................1811.00100001000000000000
....................................................................................TGTGCAT--------AAAAATAGACC---A----CAGCTATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGCAGACGCGGATCAGAGG.....................................................................................2411.00100000000010000000
droSec2
TTCTTCAAACGA------------ATGC-------------------GCCCCTCAAATGGATGTAAAGTTTAAAACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGTCATC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---GATCATCTCAATGGATATGCTGGTTGTGCCTACTCGCCGACATTTCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCCCTGCGG--------------TCTACCTTTTATTTAGGTCAAAATATA---------------ATTGGATTTAATGCAGACGCGGATCAGAGGGATGG-----------------------------A--CGCGGCTTCAGCACAGA---------------TCAAA---CAGATGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTCTTCAAACGC------------ATGT-------------------GCCCCTCAAATGGATGTAAAGTTTAACACAAAAGGTATGTGCAT--------AAAAATAGACC---A----CAGCTATGGTGTCTGCATGGCCAAAGCACACGA------------------------CTTCGTCGGACGTC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGCCTACTCGTCGACATTTTTAGACAATGCT------------------------------------ATGTCATCGGCA--CCATTGCGGGTTTTACCGCAATCACCGCGG--------------TGTAGCTCTTATTTAGGTCGAAATATA---------------ATTGGATTTAATGCAGACGCGGCTCAGAGGGATGG-----------------------------A--CGCGGCTTCGACACAGA---------------TCAAA---CTGATGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..................................................................................................................................................................................................................................................AATGGATATGCTGGTTGTGCCT.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGCGGCTCAGAGGGATGG-----------------------------...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGACGCGGCTCAGAGGGATGG-----------------------------...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTCAGAGGGATGG-----------------------------A--C...............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................TCTCAATGGATATGCTGGTTGTGCCTAC...................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTTAATGCAGACGCGGCTC..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAATGGATGTAAAGTTTAACACAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CACCGCGG--------------TGTAGCTCTTATGAG..............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................CCTCAAATGGATGTAAAGTTTAACACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGACGCGGCTCAGAGGGATGT-----------------------------...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGGGATGG-----------------------------A--CGCGG...........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------ATTGGATTTAATGCAG...................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TGCTGGTTGTGCCTACTCGTCG.............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ACTACCAGAATATCCTTGGC---....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGCGGCTCAGAGGG....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTTTTAGACAATGCT------------------------------------ATGTCATCGGCA--.........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................C---AATAATCTCAATGGATATGC................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATGGTGTCTGCATGGCCAAAGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CGGGTTTTACCGCAATCACCGC.............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCACCGCGG--------------TGTAGCTCTTATTTAGG............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................TTGTGCCTACTCGTCGACATTTTTAG...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AATCTCAATGGATATGCTGG.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GCT------------------------------------ATGTCATCGGCA--CCATTGCGGG...............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................AATGGATATGCTGGTTGTGC.......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................GTC---TTTCGC------CTAGTGACT........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................ATCCTTGGC---AATAATCTCAATGGAT....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGG-----------------------------A--CGCGGCTTCGACACAGA---------------T...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................TATGTGCAT--------AAAAATAGACC---A----.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGCTTCGACACAGA---------------TCAAA---CTGA....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................CCCTCAAATGGATGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATCACCGCGG--------------TGTAGCTCTTATTTAGG............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................C---AATAATCTCAATGGATATGCTGGTTG..........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAGGGATGG-----------------------------A--CGCGG...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AATCTCAATGGATATGCTGGTTGTGC.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGATGG-----------------------------A--CGCGGCTTCG......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCATCGGCA--CCATTGCGGGTTT............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TATTTAGGTCGAAATATA---------------AT.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGGGATGG-----------------------------A--CGCGGCTTCG......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................TGTAAAGTTTAACACAAAAGGTATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCGGCTCAGAGGGATGG-----------------------------...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................TAACACAAAAGGTATGTGCAT--------AAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGT-------------------GCCCCTCAAATGGATGTAAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATGG-----------------------------A--CGCGGCTTCG......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGGGATGG-----------------------------A--CGCGGCTTA.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TACCGCAATCACCGCGG--------------TGTAGCTCT....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTAATGCAGACGCGGC............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGGCTCAGAGGGATGG-----------------------------A--CGCGG...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTTCAAACGC------------ATGT-------------------GCCCCTCAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTTTTAGACAATGCT------------------------------------ATGTCATCGGCA--C........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TAATCTCAATGGATATGCTGGTTG..........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTTATTTAGGTCGAAATATA---------------ATTGGA.............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................TACCAGAATATCCTTGGC---AATAATC.............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATGCAGACGCGGCTCAGAGGGA...................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................ATCTCAATGGATATGCTGGTT...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATA---------------ATTGGATTTAATGCAGA..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATCTCAATGGATATGCTGGTTG..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................TC---TTTCGC------CTAGTGACTACCAGAA.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TTTCGC------CTAGTGACTACCAGAATATCCTT..........................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGGCTCAGAGGGATGG-----------------------------A--................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....TCAAACGC------------ATGT-------------------GCCCCTCAAATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATA---------------ATTGGATTTAATGCAGACGCG..............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TGGATATGCTGGTTGTGCCTACTCGTC..............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TC---TTTCGC------CTAGTGACTACCAGAATA...............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................TTAACACAAAAGGTATGTGCAT--------AAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TTAGACAATGCT------------------------------------ATGTCATCGGCA--CCAT.....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TCTCAATGGATATGCTGGTTGTGCC......................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GGTTGTGCCTACTCGTCGACATT........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------ATTGGATTTAATGCAGACGC...............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTTCAAACGC------------ATGT-------------------GCCCCTCAAATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TAACACAAAAGGTATGTGCAT--------AAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTCGAAATATA---------------ATTGGAT............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAGGGATGG-----------------------------A--CGCGGCTTCGA.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTCATCAAACGC------------ATGT-------------------GCCCCTCAGATGGAAACAAAGTTTAAAAAAGAAGGTACGTGCAT--------AAAAAGAGACC---A----CAGCTATGGTGTCTGCATGGCCAAGGCACACGA------------------------CTTCGACGGTCGTC---TTTCGC------CTAGTAACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGTCTACTCTTCGACAGTCCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCAGCGCGG--------------TCTAGCTTTTATTTAGGTCGAGATATA---------------ATTGGATTTAATACAGACGCGGCTCAGAGGGATGG-----------------------------A--TGCGGCTTCGGCATGGA---------------TCAAG---CTGTTGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................ATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGG................................................................................................................................................................................................2611.0010100000
droYak3
GCCATCAAACGC------------ATGT-------------------GCCCCTCAAATGGATATAAAGTTTAAAAAAGAAGGTATGTGCAT--------GAAAAGGGAAC---A----CAGCTATGGTGTCTGCATGGCCAAGGCACACGA------------------------CTTCGACGGTCGTC---TTTCGC------CTAGTGACTACCAGAATATCCTTGGC---AATAATCTCAATGGATATGCTGGTTGTGCCTACTCGTCAACATTCCTAGACAATGCT------------------------------------GTGTCAGCGGCA--CCATTGCGGGTTTTACCGCAATCAGCGCGG--------------TCTAGCTTTTATTTAGGTCAAGATATA---------------ATTGGATTTAATGCAGACGCGGCTCAACGGGATGG-----------------------------A--TGCGGCTTCGGCATGGA---------------TCAAA---CTATTGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................CTAGTGACTACCAGAATATCCTTGGC---....................................................................................................................................................................................................................................................................................................................2611.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTAATGCAGACGCGGCTCA.........................................................................................2611.00101000000000
..............................................................................................................................................................................................................................................................................CAACATTCCTAGACAATGCT------------------------------------GTGTCAGC...............................................................................................................................................................................................................2811.00100100000000
............................................................................................................................................................................................C---TTTCGC------CTAGTGACTACCAGAAT................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................GGATATGCTGGTTGTGCCT.....................................................................................................................................................................................................................................................................................1911.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGGCTCAACGGGATG.................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGG-----------------------------A--TGCGGCTTCGGCAT..................................1911.00101000000000
....................................................................................TGTGCAT--------GAAAAGGGAAC---A----CAGCTATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTTTATTTAGGTCAAGAT.....................................................................................................................................2211.00110000000000
droEug1
GTCATCAAAACC------------ATGC-------------------CCCCCTCATATGGATATAAACCTAAAAACAGAAGGTATGTGTAT--------AAAGAGAGAGC---A----ACGTCATGGTGGCTGCAAGGCCAAAGCACACGA------------------------ATGTGATCGTCACT---TTTTTC------CTGGTGATGACCAGAATATCTATGCC---GATAATATCAATGGATATACTGGTTTTGCCTTCTCATCGGCATTTCATAACAATGTA------------------------------------GTATCAGCGGCG--CCATTGCGTACCTTAGCGCAAACAGCGCGC--------------TCTAACTTTTATTTAAGTCAAGATTTT---------------TTTGAATTAAATGCAGACGTGGATCAGGCAGGAGAACTGTCGCAAT----------------------GCGACTTTGCGATGGG---------------TCAAA---CTGCTGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCATCAAAACC------------AAGT-------------------GCAACTCAAATGGACATAATTTTCAAAACGAAAGGTATGTGCAT--------AGAAAAAGACC---A----ACGCTTTGGTGTCTGCATGGCCAAGGCAGACGA------------------------ATATGACCTTCGTA---TTCTGC------CTGGTGACTACCAGAATATCTATGCC---GATAATCTCAATGGATATGCTGGTTTTGCCTACCCATCGACATTCTTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCATCGCGTGCTTTACCACAAACAAATCGG--------------TCAAGCTTTTATTTAGGTCAAGATATA---------------TTTGGATTAAATGCAGACGAGGCACAGAGGGAAGAACAGTCTAAAT----------------------GCGACTTTGGGATGGA---------------TCAAG---CTGTTACTSizeHit CountTotal NormTotal
No Reads
droTak1
ATCATCAAAACC------------AAGT-------------------GCCACTCAAATGGATATGAAGTTTAAAGCGGAAGGTATGTGCGT--------AGAGAGAGACC---A----ACGCTATGGTGTCTGCATGGCCACAGCAGACGA------------------------ATATGACCGTCGTC---CTTTGC------CTGTTGACTACCAGAATATCTATGCC---AATAATCTCAATGGATATGCTGGTTTTGCCTACTCATCGACATTCCTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCATCGCGTGCTTTACCGCAAACTGCGCGG--------------TCAACTTTTTATTTAAGTCAAGATGTA---------------TTTGGATTAAATGCAGATGCGGCTCAGATGGAGGAACTGTCCCAGT----------------------GCGGCTTTGGGATGGA---------------TCAAA---CTACTGCGSizeHit CountTotal NormTotal
No Reads
droEle1
ATCATCAAAACC------------AAGT-------------------GCCAGTCAAATGGATATGGAGTTCCAAAGAGAAGGTATGTGCGC--------TGAAAGAGACC---A----ACGCCATGGTGTCTGCATGGCCAAAGCACACGA------------------------ATATGACCGTCGTC---TTTTGC------CTGGTGATAACCAGCTTGTCCATGCC---AATAATCTTAATGGATATGCTGGTATTGCCTATTCATCTACATTCCTAAACAATGCA------------------------------------GTGCCAGCAGCG--CCATCGCGAGCTTTACCACAGATAGCACGA--------------TCTAGTTTTTATTTAAGCCAAGATTTA---------------TTTGGATTAAATGCAGACACGGCTCAGAGGGAGGAACTTTCGCAAT----------------------GCAGCTTTGGAATGGA---------------TCAAA---C-------SizeHit CountTotal NormTotal
No Reads
droRho1
GTCATCAAAACC------------AAGT-------------------ACAACTCGAATGGATATGGATTTGAAAACTGAAGGTATGTGGTC--------AGAAAGAAACC---A----ACGCCATGGTGTCTGCATGGCCAGAGCACAAGA------------------------TTATGACCATCGTC---TTTTGC------CTGGTGATTACCAGATTGTCAATGCC---AATAATCTAAATGGATATGCAGGTTTTGCCTATTCATCGACGTTCTTAAACAATGCA------------------------------------GTGCCAGCGGCG--CCAACGCGTGCTTTACCACAAAAAGCACGA--------------TCTAGCTTTTATTTAAGCCAAGATTTA---------------TTTGAACTGAATGCAGACGCGGCTCCGAGGGAAGACCTAATACAAT----------------------GCAGCTTTGGAATCGA---------------TCAAA---CTGTTCCCSizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------AATGGATCCAAAGTTTGGCGCAGAAGGTATGTGCGT--------AGAACGAGACC---AACA-ATACCATGGAATCTGCATGGCCGAAGCACACGA------------------------AGATGACAGTCAGC---ATTCGC------TTGTTAATTACCAGCATATCCGTGCC---AATAGTTTTAAGGGATATGCCGGTTTTGCCGGCTCATCGACATTAACAAGCAAT-----------------------------------------GCCACCAACATTCCATCGCGTGCTTTGCCGCAAACAGATCGA--------------GCCAGCATTTATTTTAGTCAAGATTTA---------------TTTGGATTAAATGCAGACGCCGCTCACAGGGAAGATCTATCACAAA----------------------ATCT---CTATCTGAA---------------CAAAA---ACTTTACGSizeHit CountTotal NormTotal
No Reads
droKik1
ATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTAAGCAAACTA------------ATACTGGGGCATCGGAACTAAGTGC---TGCAATGG------ACTTAAAAATTGAAGGTATGTGCAT--------AAAAAGAGAAA---A----ACGCAATGGTGCCTGTACGGCCAACCCAAAAAA------------------------AACTGT------------------------------------AAATGTACACTCT---AATAATTGTTATGAATATCAAGA---TGGCTATTCATCGACTTTCTTAAAAAATAGA------------------------------------GCCTTAGCGGCA--CCATCGCGGGCATTGGAGCAATC-----------------------AAGCTTCTACTCACACCAAGGTTTA---------------TTTGGATTCACCACAGATCTAGAAGCTACAAAAGATCTGCTGAAAA----------------------GCAA---TCGTATAGC---------------CCAAC---TCGGCGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................GCGGGCATTGGAGCAATC-----------------------AAGCTT.....................................................................................................................................................2411.001000001
.........................................................................................AT--------AAAAAGAGAAA---A----ACGCAATGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTACTCACACCAAGGTT....................................................................................................................................2111.001100000
....GCAAACTA------------ATACTGGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
......................................................................AAAAATTGAAGGTATGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......AACTA------------ATACTGGGGCATCGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droBip1
TTCTAGAAAACC------------GCAA-------------CTA---AGTTCTGAAATGG------ACTTAAAAATACAAGGTATGTGCAT--------AAAAAGAGAAA---A----ACGCAATGGTGTCTGCATGGCTAAAACGAATAA------------------------AGCTGT------------------------------------AAATTTACATGGT---AGTAAATGTAATGAAAATCAAGATTTTGAGTATTCATCGAATTTCTTAAAAAATAGA------------------------------------GGCGTAGCGGCA--CCATCGCGGGCATTGCAGCAAAA-----------------------GTGCGTATACTCACACCAAGGTTTA---------------TTTGGATTTACCACAGATCCCGAAGATACAAGAGATCTACTGAAAA----------------------GCAACCGAAGCACAGA---------------CCAAC---TCGGCGGGSizeHit CountTotal NormTotal
No Reads
dp5
TGTCGCGAACGGGTCGACTGTTCGAGGT-------------------GACATTGGAATGGAGATGGATCT------GGAAGGTATGTATATGTACCCGCAAAGAGAAAAC---ACCAGCCACCATGGTGCCTGCTTGCCCAAT---CATGA------------------------CAGTGCAAAAGACC---ATGGGT------CAGGCGCCTACCAGAATGTCTACGAA---AATAATCTCAATGGACATACTGGCTATG------CACCAACAATTACAGATAATAGG------------------------------------GTGCCAGCAGCA--CCATTGCGTGTCTTGCCGAGAACA---CGAGCACGACGAGTTCA--GCGCTCAAGTTTAAGTCAAAATTTA---------------TTTGATTTAAATGCAGATTCAACATACGCAGAAGATCCATCTATAG----------------------GTGACCTAACCATGACAGCACTTTGTATGGCCCCACCTACAGAGGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................TGGAATGGAGATGGATCT------GGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000010
..............................................................................................................................................................................................................................................................................CAACAATTACAGATAATAGG------------------------------------G......................................................................................................................................................................................................................2111.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................ACA---CGAGCACGACGAGTTCA--GC.........................................................................................................................................................2211.0010100000000
droPer2
TGTCGCGAACGGGTCGACTGTTCGAGGT-------------------GACATTGGAATGGAGATGGATCT------GGAAGGTATGTATATGTACCCGCAAAGAGAAAAC---ACCAGCCACCATGGTGCCTGCTTGCCCAAT---CATGA------------------------CAGTGCAAAAGACC---ATGGGT------CAGGCGCCTACCAGAATGTCTACGAA---AATAATCTCAATGGACATACTGGCTATG------CACCAACAATTACAGATAATAGG------------------------------------GTGCCAGCAGCA--CCATTGCGTGTCTTGCCGAGAACA---CGAGCACGACGAGTTCA--GCGCTCAAGTTTAAGTCAAAATTTA---------------TTTGATTTAAATGCAGATTCAACATACGCAGAAGATCCATCTATAG----------------------GTGACCTAACCATGACAGCACTTTGTATGGCCCCACCTACAGAGGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCAG--------------------------------------------------------------ACATTGGGATGCAAGGTACGTACGC--------AAGGAGATGCAGAGGCCA-GCCGTTTGATGCACACG---------CTGACGG------------------------TGTCAAGAGTCGCA---TGTTGCCGCAGACAGTTCCCTACTCGAATGTCTACACT---AACAGCTTCAATGGACATGCTGGTGGTGCA---CCGTCAACATGCGGCAATGACAGG------------------------------------ACGCCAACGATG--CCATTGCGGGTCTTGCCTCAATTA---CGA--------------TCACGCTCTGTATTAAATCAGCAAATT---------------TTAGAGATGGATGCCTACAGGCCACATAGCAGTGGTAATTTAGGGAATAGTTTTGCCATGGTGGA--CACGGTTTCGA--CGAC---------------TGAAG---TAGCCACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTCGTCAACGAA------------ATATTCAGATG--------ATGTGCC-----------------------AATTGAAGGTACGTACAC--------CAGAAGAGGCA---A----TCGCATTGGTGTCTGCCTGCCAACCGCACCCGCGTCGTCGACGACAATAGTAATGGATAATTCAAAATATCGGATGTTACCGCACGCGGCTGCTTACCAAAATGTTCACGCTGAAAACAATCTGAATGGACATTCCGGCTATGCA------TCGA------------ATGCTGGTTTAATAGACGAGAGAATAGGTAGTTTTATTAGTTTGCCAGCGGCA--CCAATGCGGACGTTACCCGAGCCTCAGCAA---CGA--------CCCAGCTCC---TCACATCGA---TTATTTGAAGATAACAACTTAAAGGCAGATGCCTTCGGAAATCAAAACG--------------T------GCGTGATAG---CGTATCGGCTACACTA-GGG---------------TCAG-------CCAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATGG......................................................................................................................................................................................................................................................................................................24120.0020000010000000000000000000000010000200008800000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATG...........................................................................................................................................................................................................................................................................................................................................................26113.0013000010000000000000000000000000000100003800000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATGT..........................................................................................................................................................................................................................................................................................................................................................27110.0010000000000000000000000000001000000100002600000000000000000000000
.........................................................................................................................................................................................................................................AACAATCTGAATGGACATTCCGG.............................................................................................................................................................................................................................................................................................2317.007000000000000000000000000000000100100000500000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATC...........................................................................................................................................................................................................................................................................................................................................................2616.006000000000000000000000000000000200000000400000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAGATGC.....................................................................................................2615.005000000000000000000000000000000000000002300000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAACG--------------T------GCGTGATAG---CGTA...............................................2214.004000000000000000000000000000000000100000300000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAGGTAGTTTTATTAGTTTGCC..................................................................................................................................................................................................................2214.004000000000000000000000000000000000100000300000000000000000000000
......................................................................................TACAC--------CAGAAGAGGCA---A----TCGCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000000000100000200000000000000000000000
................................................................................................................................................................................................................................CACGCTGAAAACAATCTGAATGGA.....................................................................................................................................................................................................................................................................................................2413.003000000000000000000000000000030000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATAGACGAGAGAATAGGTAGT................................................................................................................................................................................................................................2113.003000003000000000000000000000000000000000000000000000000000000000
..................................................................................TACGTACAC--------CAGAAGAGGCA---A----TCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000000000000000000000000000010000100000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAGA........................................................................................................2313.003000000000000020000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAGAT.......................................................................................................2413.003000000000000000000000000000000000000002100000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATGTGCC-----------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000100010100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCGGAAATCAAAACG--------------T------GCGTGA.........................................................2613.003000000000000000000000000000020000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATCAAAACG--------------T------GCGTGATAG---CGTA...............................................2713.003000000000000000000000000000000000000000300000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGC...........................................................................................................2012.002000000000000000000000000000000000000000200000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATGTC.........................................................................................................................................................................................................................................................................................................................................................2812.002000001000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................CACGCTGAAAACAATCTGAATGG......................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000100010000000000000000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000100000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATGGA.....................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000001100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAGGTAGTTTTATTAGTTTGCCA.................................................................................................................................................................................................................2312.002000000000000000000000000000010000000001000000000000000000000000
................................................................................................................................................................................................................................CACGCTGAAAACAATCTGAATGGAC....................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000020000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TAATAGACGAGAGAATAGGT...................................................................................................................................................................................................................................2012.002000000000000000000000000000020000000000000000000000000000000000
.........................................................................................................................................................................................................................................AACAATCTGAATGGACATTCCG..............................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000200000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAG.........................................................................................................2212.002000000000000000000000000000010000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATCAAAACG--------------T------GCGTG..........................................................2112.002000002000000000000000000000000000000000000000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000000000001000000000001000000000000000000000000
................................................................................................................................................................................................................................................TGAATGGACATTCCGGCTATGCA------TC..............................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000100000100000000000000000000000
..........................................................................................................................................................................................................................................ACAATCTGAATGGACATTCCGG.............................................................................................................................................................................................................................................................................................2212.002000002000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................ACGCTGAAAACAATCTGAATGGAC....................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG---CGTATCGGCTACACTA-GGG---------------TC..............2411.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................TGAATGGACATTCCGGCTATGCA------TCG.............................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAACG--------------T------GCGTGATAG---CGT................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTTAAAGGCAGATGC.....................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AATCTGAATGGACATTCCGGA............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATGTGCC-----------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAGGTAGTTTTATTAGTTTGCCAGCG..............................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCCAGCGGCA--CCAATGCGGACGTTAC.........................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAGGTAGTTTTATTAGTTTGCCAGC...............................................................................................................................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................GATGTTACCGCACGCGGCTGCTTAC......................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CAATGCGGACGTTACCCGAGCCTCA...............................................................................................................................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATCAAAACG--------------T------GCGTGA.........................................................2211.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATCAG.........................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000100000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTGAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................GTAATGGATAATTCAAAATATCGGATG...........................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACG--------------T------GCGTGATAG---CGTATCGG...........................................2411.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAGATT......................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................AACAATCTGAATGGACATTCCGGCTA..........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATGGAA....................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GACGAGAGAATAGGTAGTTTTATCC.........................................................................................................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGCTGGTTTAATAGACGAGAGAATAGG....................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TAGTTTTATTAGTTTGCCAGCGGC............................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG--------------T------GCGTGATAG---CGTATCGGCTAA.......................................2611.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATCAAAACG--------------T------GCGTGATAG---CG.................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATG.......................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................CTGCCAACCGCACCC........................................................................................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................AATTGAAGGTACGTACAC--------CAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATAGACGAGAGAATAGGTAGTT...............................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGATAACAACTTAAAGGCA..........................................................................................................2311.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................TCTGAATGGACATTCCGGCTAT.........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAAACG--------------T------GCGTGATAG---CGTA...............................................2611.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................AAAACAATCTGAATGGACATTCCGG.............................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................TATGCA------TCGA------------ATGCTGGTTTAATA..................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................AGAGGCA---A----TCGCATTGGTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................TAATAGACGAGAGAATAGGTATGC...............................................................................................................................................................................................................................2411.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCCAGCGGCA--CCAATGCGGACGT............................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TTGCCAGCGGCA--CCAATGCGGAC..............................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.....CAACGAA------------ATATTCAGATG--------ATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGCAGATGCCTTCGGA..............................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGCTGGTTTAATAGACGAGAGAAT.......................................................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGA.............................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................TATGCA------TCGA------------ATGCTGGTTTAATAGA................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................TGCTGGTTTAATAGACGAGA...........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAAT...................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCGGAAATCAAAACG--------------......................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TTGCCAGCGGCA--CCAATGCG.................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTTCGGAAATCAAAACG--------------T------GC.............................................................2511.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGAAGATAACAACTTAAAGGCAG.........................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................GTAATGGATAATTCAAAATATCGGATGT..........................................................................................................................................................................................................................................................................................................................................................2811.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AATTCAAAATATCGGATGTG.........................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAAATCAAAACG--------------T------GCGTGATAG---...................................................2611.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................TCGACGACAATAGTAATGGATAATTC........................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTTAAAGGCAGATGCCTTCGG...............................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA---TTATTTGAAGATAACAACT..................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................ATAGACGAGAGAATAGGTAGTTA..............................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GCA--CCAATGCGGACGTTACCCGAGCCT.................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGGCTACACTA-GGG---------------TC..............1911.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................AACAATCTGAATGGACATTCCGGC............................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCCTTCGGAAATCAAAACG--------------T------GCG............................................................2711.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCTCC---TCACATCGA---TTATTT...............................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................TTCACGCTGAAAACAATCTGAATGG......................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................TACAC--------CAGAAGAGGCA---A----TCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................CATTCCGGCTATGCA------TCGA------------................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATGT......................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCC---TCACATCGA---TTATTTGAAGATAAC......................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
...........................................................................TTGAAGGTACGTACAC--------CAGAAGAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGAT............................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................TCACGCTGAAAACAATCTGAATGGAC....................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................CGCTGAAAACAATCTGAATGG......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AATGCGGACGTTACCCGAC....................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATCGGCTACACTA-GGG---------------TCT.............2211.001000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAGGTAGTTTTATTAGTTTG....................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TATTAGTTTGCCAGCGGCA--CC.......................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................ATGCGGACGTTACCCGAGCCTCAG..............................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATCAAAACG--------------T------GCGTGATTC---...................................................2511.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACG--------------T------GCGTGATAG---CGTATCG............................................2611.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................AAACAATCTGAATGGACATTCCGG.............................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGAAAACAATCTGAATGGACATTCCGGC............................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................CAACCGCACCCGCGTCGTCGACGAC..........................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................AGAAGAGGCA---A----TCGCATTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................TAGTAATGGATAATTCAAAATATCGGA.............................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................GTTCACGCTGAAAACAATCTGAATG.......................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGACGAGAGAATAGGTAGTTTTATTAG........................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
..........................ATTCAGATG--------ATGTGCC-----------------------AATTGAAGGTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGATAACAACTTAAA..............................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................AATTGAAGGTACGTACAC--------CAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATCAAAACG--------------T------GCGTGAT........................................................2311.001000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATAGACGAGAGAATAGGTAGTTT..............................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTTAATAGACGAGAGAATAGG....................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCGGAAATCAAAACG--------------T------GCGTG..........................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGATAACAACTTAAAGGCAGAT.......................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................TAATGGATAATTCAAAATATCGGATCC..........................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAATCAAAACG--------------T------GCGTGATA.......................................................2411.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................TACCAAAATGTTCACGCTGAAAACAATCT............................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAACAACTTAAAGGCAGATG......................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................AACCGCACCCGCGTCGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......ACGAA------------ATATTCAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000000001

Generated: 05/19/2015 at 04:14 AM