dsi_29017

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGTAATGGTATCCAAAGCGGTTGCCATACACGACGACAAAAAGTGCAAAGTCGATTTTGTAGTGCGAAGAATAAAAAAAAAAGAAAAAGAGAAATGAAATGAAAATAGTGCGAGGGAGTCCACGACTCCTTTCCTTTCCAATTGGTGGCAAGTAGGCTTGGTTGTAATGGTTTGTAGTGCAATAGTTTAAGTGTAAC ***********************************************************************************************************.......................................................(((((((((...)))))))))...************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	O002 Head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M024 male body	O001 Testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
....................GAAAATGCCATCCAATAT....................................................................................................................................................................................................................	18	0	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
..............................................................................................................TTTAGTGCGGAGTATAAAAAAAA.....................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GGTGGCAAGTAGGCTTGGTTG.................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................TTGTAGTGCGAAGAATAAAAA........................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TGGTTGTAATGGTTTGTAGTG..................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.........CCATTAAGTGTGAAAATGCCATCC.........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................ACTGCAAAGTCGATTTTGTAGT......................................................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................AAAGTCGATTTTGTAGTGCGA..................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AGTCCACGACTCCTTTCCT..............................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTAGTGCGGAGTATAAAAAAAA.....................................................................................................................	22	3	2	1.00	2	0	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................TCCACGACTCCTTTCCTT.............................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................TTTAGTGCGGAGTATAAAAAAAAA....................................................................................................................	24	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................AATGGTTTGTAGTGCAATAGT...........	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
..........CATTAAGTGTGAAAATGCCATCCAA.......................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GACAAAAAGTGCAAAGTCGATTTTG..........................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................CTTGGTTGTAATGGTTTGTAG....................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................TAGTGCGGAGTATAAAAAAAA.....................................................................................................................	21	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TTGCGCGGAATAAAAAAAAAAGAAAA..............................................................................................................	26	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AATGAAATGAAAATAGT........................................................................................	17	0	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................AATAAAAAAAGTAGACAAAGAGAA........................................................................................................	24	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTAGCCTTGGTTGTA...............................	15	1	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0
........CCCAGTAAGTGTGAAAA.................................................................................................................................................................................................................................	17	2	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................CCACGACGCCCTTCCATTC...........................................................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................GTGCTGGTATCCGAAGCGG.................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................CCACGACGCCCTTCCTCTC...........................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................AGGGTTGTAGTGCAAT..............	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................AAAAAAGAAAAAGAGAAGTTCA...................................................................................................	22	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................GAGATGCGAAGAATAAAAAAA......................................................................................................................	21	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0

TTCAACGTTGGTAATTCACACTTTTACGGTAGGTTATACTTATTATTTGACATTCATTACCATAGGTTTCGCCAACGGTATGTGCTGCTGTTTTTCACGTTTCAGCTAAAACATCACGCTTCTTATTTTTTTTTTCTTTTTCTCTTTACTTTACTTTTATCACGCTCCCTCAGGTGCTGAGGAAAGGAAAGGTTAACCACCGTTCATCCGAACCAACATTACCAAACATCACGTTATCAAATTCACATTG ************************************************************.......................................................(((((((((...)))))))))...***********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR902009 testis	GSM343915 embryo	SRR902008 ovaries
......................................................................................................................................................................................AAAGGAAAGGTTAACCACCG................................................	20	0	1	1.00	1	0	0	0	1	0
.................................................................................GTGCTGCTGTTTTTCACGTTT....................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
...............................................................................ATGTGCTGCTGTTTTTCACGTT.....................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...............................................................................ATGTGCTGCTGTTTTTCACGT......................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
........................................................TTACCATAGGTGTCTCCAA...............................................................................................................................................................................	19	2	4	0.25	1	1	0	0	0	0
..............................................................................TATGGGCTGCTGTTTTAGAC........................................................................................................................................................	20	3	16	0.06	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:8766084-8766333 -	dsi_29017	AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AAAAA---AAAAGAAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
droSec2	scaffold_1:5606444-5606691 -		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AA--A---AAAAGAAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
dm3	chr2R:8061388-8061645 -		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTG-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AA--A---AAAAGCAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTTAAGTGTAGTATAAGTGTAAC
droEre2	scaffold_4845:17732604-17732844 +		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACA--CGAC----------GA-GA-TAAAGTGCAA-AGTCGATTTTGTAGTGCGATGAAAA-AA--AAAA-----AATA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTT--------CACGACTCCATTCCATT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
droYak3	2R:8889774-8890018 +		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACA--CGAG----------GA-AA-AAAAGTGAAA-AGTCGATTTTGTAGTGCGAAGAAT-GAAAAA---AAAAGAAAA--AGAG-------A-----A---------ATG----AAAATAGTGCTAGGGAGTC--------CACGAC-----CCCTTTCCATTCCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
droEug1	scf7180000409462:402001-402233 +		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCCAATTGGAGACCA-TACA--CGAA----------GA-GAAAAAAGTGCTA-AGTCGATTTTGTAGTGCAAAGAA--------------AGAAAATGAGAA-------A-----A---------AAG----AAAATAGTGCTAGGGAGTC--------CACGAC-----CCCTTT-----CAAATTGGCGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC
droBia1	scf7180000302292:877273-877505 -		AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAAAATGAATAATAAACTGTAAGT-AATGGCA-TCCGAGCTGGAGGCCA-TACA--CGAA----------GA-GAGAAAAGTGCAA-AGTCGATTTTGTAGTGCCGAGAAA------------GAGAAAA--AGAG-------A-----A---------ATG----AAAATAGTGCCAGGGAGTC--------CACGAC-----CCCTTT-----CCCATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
droTak1	scf7180000415260:180623-180858 +		AAGTTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAGTTGGACGCCA-TACA--CGAA----------GA-GAAAAAAGTGCAA-AGTCGATTTTGTAGTGCAAAGAAA-GAA--GAAA----G--AA--AGAGA------A-----A---------ATG----AAAATAGTGCG-GGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC
droEle1	scf7180000491214:3596152-3596372 -		AAGTTGCAACCATTAAAAGTGAAAATGCCTTCCAATATGAATAATAAACTGTAAGTTAATGGTT-TCCA--TTGGATGCCA-TATA--CAAA----------GA-GA-AAAAGTGCAT-AGTCGATTTTGTAGTGAAAAGAAA--------------A------------------------------AAAATG----A-AATAGTGCGAGGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGTTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC
droRho1	scf7180000779932:500716-500949 -		AAGTTGCAACCATTAAGTGTTAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGTC-TCCA-TTTGGATGCCA-TACA--CAAA----------GA-AAAAAAAGTGCAA-ACTCGATTTTGTAGTGCAA-GAAA-GAA--GAAA------AAA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AAT---------AGGTTTGGTTGCAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC
droFic1	scf7180000453809:456841-457068 -		AAATTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTC-TCCA-ACTGGATGCCA-TACA--CAAA----------GA-AA-AAAAGTGCA--AGTCGATTTTGTAGTGTGAAAAA----A--GAAA----G-AAA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTC--------CACGAC-----CCCTCT-----CTAATTGGTGGCA--------------------A------------GGTTTGGTTGTGATGGTT----------------------------TGTA--GTGCTATAGTT----------TAAGTGTAAC
droKik1	scf7180000302367:389071-389293 +		AAATTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGCT-TCCT-ACTGGTCGCCA-CACA--CAA-----------GA-GA-AAAAGTGCA--AGTCGATTTTGTAGTGCGAAGAA-------------------A--TGAA---------------------AAATC---AAAAATAGTGTGT-GGAGTC-GCAG-TGCTCGAC-----CCCTTT-----CCAATTGGTGGCT--------------------G------------GTCTTGGTTGTAGTGGTT----------------------------TGTA--GTGTAA--ATT----------TAAGTGTATC
droAna3	scaffold_13266:2564903-2565124 +	dan_1741	AATTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TAT----G------------GAGGA-AAAAGTGCCA-GTTCGATTTTGTAGTGTGAAGAAAA-AA--A---------AAA--TGAGAAAATAAAAAAGAA---------AAG----AAA--AGTGCGAAGGAGTTCGTAA---CACGAC-----CCCTTT-----C--ATTGGTGGCA--------------------TGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGTAATAGTT----------TTAGTGTAAC
droBip1	scf7180000396759:1626679-1626893 +		AATTTGAAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TAT----AA------------AGGA-AAAAGTGCCA-GTTCGATTTTGTAGTGTGAA---------------AAAGAAAA--TGAG-------AAAAGAA---------AAA----AGAAAAGTGCTAGGGAGTTCGTAA---CACGAC-----CCC-TT-----CCAATTGGTGGCA--------------------TGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGTAATAGTT----------TTAGTGTAAC
dp5	3:421106-421315 -	dps_909	AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------------AAGA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAA--A----TGA--AA----G------------------------------ATAATG---TAAAACAGTGCG-------C--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------TGT---------AGCTATGGTTGTAGTGGTT----------------------------TGTA--GTGAAGTAGCT------------GGTGTAAC
droPer2	scaffold_2:608003-608212 -	dpe_986	AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------------AAGA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAA--A----TGA--AA----G------------------------------ATAATG---TAAAACAGTGCG-------C--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------TGT---------AGCTATGGTTGTAGTGGTT----------------------------TGTA--GTGAAGTAGCT------------GGTGTAAC
droWil2	scf2_1100000004954:3237526-3237772 +		AATTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGTCCTCCCA----GGTGCCAGTGCAAGCAAA----------TA-AA-AATAGTGCAA-AATCGATTTTGTAGTGTGAT-AAA-GA---GAAAA------AA--AGCA-------A-----A---------ATAATGGAAAATAGTGT--------C--------C--------CCCATTTT-----CCAATTGGTGGCAAAAGAATAAGAAAAAGAAAAAGT---------AGTTATGGTTGTAATGGTT----------------------------TGTAGAGTGTAATAGTA----------TAAGTGGAA-
droVir3	scaffold_12875:19825721-19825958 +	dvi_8025	AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA----A------------A-GA-AATAGTGCAAAAATCGATTTTGTAGTGAATG--A----TAA-----------AA--AAGG-------A-----A---------ATG---GAATATAGTGT------------------ACGGT-----TCCAAT-----CCAATTGGTGGCA--------------------TATATATTATGTAGT-----TTGT--TGGTTGCCAATAAATACATAGCAAGTT--C-ATTATA--GTGCAATAGTTT---------TTAGTGTAAT
droMoj3	scaffold_6496:6380196-6380473 -		AAGTTGCAACCATTAAGTTTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-TATGGTG-T--------GAAGCCA-TTTAA-TGAAATATAGTGATAAA----------AAA-AATCGATTTTGTAGTGAATA--A----TAAA---AAAAGAAAA--TGAA-------AATAAAAATAAAGAAAATG---GAAAATAGTGCACGG-ATACCGTAAGCAATCGGA-----TCCAAT-----CCAATTGGTGGCATA------------------AGT----TATGTAGT-----TTGT--TGGTTGCCAATAAATGCATATAAAGTTTCCTA-TGTA--GTGCTGTAGTT----------T-AGTGTACA
droGri2	scaffold_15245:18174026-18174284 +		AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGTA--CCAA----GGAGCCA-TGCT--A--------------AAAA-AAAA--GCAAAAATCGATTTTGTAGTGAAAA--A----T-------------AA--AGAG--------------------GAAATG---GAAAATAGTGCACGGGTA-CCGTAGCCAATCGGA-----CCAAAT-----CCAATTGGTGGCA--------------------AATTAATTATGTAGT--TTGTTGT--TGGTTGCCAATAAAATCATGGCAAATTTTCTATAATA--GTGCAATAGTTT---------TAAGTGTAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AAAAA---AAAAGAAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................GAAAATGCCATCCAATAT..................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGTGGCA--------------------AGT---------AGGCTTGGTTG.........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................TTGTAGTGCGAAGAATA-AAAA...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGGTTGTAATGGTT----------------------------TGTA--GTG............................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........CCATTAAGTGTGAAAATGCCATCC.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AA-AGTCGATTTTGTAGTGCGA..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGTC--------CACGACTCCTTTCCT........................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TC--------CACGACTCCTTTCCTT.......................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AATGGTT----------------------------TGTA--GTGCAATAGT.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........CATTAAGTGTGAAAATGCCATCCAA.....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GA-CA-AAAAGTGCAA-AGTCGATTTTG......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CTTGGTTGTAATGGTT----------------------------TGTA--G..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................AATGAA---------ATG----AAAATAGT..........................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AA--A---AAAAGAAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
AAGTTGCAACCATTAAGTGTGAA.................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
...........ATTAAGTGTGAAAATGCCA..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................TAATGGTT----------------------------TGTA--GTGCAA.........................	18	1	1.00	1	0	0	1	0
............................................................................................................................ATTTTGTAGTGCGAAGAATA-AA--A---AAAA...........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
AAGTTGCAACCATTAAGT......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................TG----AAAATAGTGCGAGGGAGT................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................................................................................GT---------AGGCTTGGTTGTAATGGTT----------------------------.....................................	21	1	1.00	1	0	0	0	1
.......................................................................................................................................................................G-------AAATGAA---------ATG----AAAATAGTGCGAGGG...................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................TTTCCTTT-----CCAATTGGTGGCA--------------------................................................................................................	21	1	1.00	1	0	0	0	1

dm3

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTG-TCCAAAGCGGTTGCCA-TACA--CGAC----------GA-CA-AAAAGTGCAA-AGTCGATTTTGTAGTGCGAAGAATA-AA--A---AAAAGCAAA--AGAG-------AAATGAA---------ATG----AAAATAGTGCGAGGGAGTC--------CACGACTCCTTTCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTTAAGTGTAGTATAAGTGTAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................TT----------------------------TGTA--GTGCAATAGTTAAGTG...............	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................T-AATGGTG-TCCAAAGCGGTTGCCA-T.....................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
...............................................................................................................................................................................................................................................................TGGCA--------------------AGT---------AGGCTTGGTTGT........................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTAAGTGTGAAAATGCCATCC.......................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAA---------ATG----AAAATAGTGCGAGGG...................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CATTAAGTGTGAAAATGCC...........................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGGTTGTAATGGTT----------------------------TGTA--GTG............................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................GGGAGTC--------CACGACTCCTTTC..........................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
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.............................................................GTG-TCCAAAGCGGTTGCCA-......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................AGT-AATGGTG-TCCAAAGCGGTT...........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AATGGTT----------------------------TGTA--GTGCAATAGC.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AACTGTAAGT-AATGGTG-TCCAA..................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................TTGCCA-TACA--CGAC----------GA-CA-AA..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTGCAATAGTTAAGTGTAGTA..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................CAA-AGTCGATTTTGTAGTGCGAA.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACA--CGAC----------GA-GA-TAAAGTGCAA-AGTCGATTTTGTAGTGCGATGAAAA-AA--AAAA-----AATA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTT--------CACGACTCCATTCCATT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........ATTAAGTGTGAAAATGCCA..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................TT--------CACGACTCCATTCCATT-----CCA..............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GTAATGGTT----------------------------TGTA--GTGCAATA.......................	21	1	1.00	1	0	0	0	0	1	0	0
AAGTTGCAACCATTAAGTGT....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................................................................................A-TACA--CGAC----------GA-GA-TAAAGT......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................ATTGGTGGCA--------------------AGT---------AGGCTTG.............................................................................	20	1	1.00	1	0	0	0	0	0	1	0
AAGTTGCAACCATTAAGTGTGAA.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................AGTGCGAGGGAGTT--------CACGACTCC..............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................CA--------------------AGT---------AGGCTTGGTTGTA.......................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................GA-TAAAGTGCAA-AGTCGAT..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............................................................GGTA-TCCAAATTGGTTGCC........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................A-----AATA--AGAG-------A-----A---------ATG----AAAATAGT..........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
....TGCAACCATTAAGTGTGAAA................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0

droYak3

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACA--CGAG----------GA-AA-AAAAGTGAAA-AGTCGATTTTGTAGTGCGAAGAAT-GAAAAA---AAAAGAAAA--AGAG-------A-----A---------ATG----AAAATAGTGCTAGGGAGTC--------CACGAC-----CCCTTTCCATTCCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................GAAA-AGTCGATTTTGTAGTGCGAAGA...........................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	1	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................ATTGGTGGCA--------------------AGT---------AGGCTTGGT...........................................................................	22	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
..................................................................................................................GAAA-AGTCGATTTTGTAGTGCGAAGAAT-........................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................TGTAATGGTT----------------------------TGTA--GTGCA..........................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................ATTGGTGGCA--------------------AGT---------AGGCTTGG............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ATG----AAAATAGTGCTAGGGAGTC--------CAC....................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTTGCAACCATTAAGTGTGAAAATG.............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGT..................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................GAAAA--AGAG-------A-----A---------ATG----AAAATAGTGCTA......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................GGCA--------------------AGT---------AGGCTTGGTTGTAAT.....................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........CATTAAGTGTGAAAATGCC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................CGATTTTGTAGTGCGAAGA...........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGGCTTGGTTGTAATGGTT----------------------------.....................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................CGATTTTGTAGTGCGAAGAAT-........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................TTGTAGTGCGAAGAAT-GAAAAA---AA.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................GAAA-AGTCGATTTTGTAGTGCGAA.............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................CGATTTTGTAGTGCGAAGAAT-GAAAAA---A..............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AATGCCATCCAATATGAATAA............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TTGTAGTGCGAAGAAT-GAAA....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTT----------------------------TGTA--GTGCAATAGTT----------TAAGT.....	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTTGCAACCATTAAGTGTGAAAATGCC...........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ATTGGTGGCA--------------------AGT---------AGGCTTGGTT..........................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................GTGGCA--------------------AGT---------AGGCTTGGTTGTAATG....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................AAA-AGTCGATTTTGTAGTGCGAA.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGGTTGTAATGGTT----------------------------TGTA--GTGCA..........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................ATTTTGTAGTGCGAAGAAT-GAAAA...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................TGAAA-AGTCGATTTTGTAGTGC................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AAGTTGCAACCATTAAGTGT....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................GATTTTGTAGTGCGAAGAAT-GAAAAA---A..............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................GGCA--------------------AGT---------AGGCTTGGTTGTAATG....................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GTGAAAATGCCATCCAATATGAATAAT...........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................AGTGAAA-AGTCGATTTTGTAGTGCGA..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCCAATTGGAGACCA-TACA--CGAA----------GA-GAAAAAAGTGCTA-AGTCGATTTTGTAGTGCAAAGAA--------------AGAAAATGAGAA-------A-----A---------AAG----AAAATAGTGCTAGGGAGTC--------CACGAC-----CCCTTT-----CAAATTGGCGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAAAATGAATAATAAACTGTAAGT-AATGGCA-TCCGAGCTGGAGGCCA-TACA--CGAA----------GA-GAGAAAAGTGCAA-AGTCGATTTTGTAGTGCCGAGAAA------------GAGAAAA--AGAG-------A-----A---------ATG----AAAATAGTGCCAGGGAGTC--------CACGAC-----CCCTTT-----CCCATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGTTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAGTTGGACGCCA-TACA--CGAA----------GA-GAAAAAAGTGCAA-AGTCGATTTTGTAGTGCAAAGAAA-GAA--GAAA----G--AA--AGAGA------A-----A---------ATG----AAAATAGTGCG-GGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAGTTGCAACCATTAAAAGTGAAAATGCCTTCCAATATGAATAATAAACTGTAAGTTAATGGTT-TCCA--TTGGATGCCA-TATA--CAAA----------GA-GA-AAAAGTGCAT-AGTCGATTTTGTAGTGAAAAGAAA--------------A------------------------------AAAATG----A-AATAGTGCGAGGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AGT---------AGGTTTGGTTGTAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGTTGCAACCATTAAGTGTTAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGTC-TCCA-TTTGGATGCCA-TACA--CAAA----------GA-AAAAAAAGTGCAA-ACTCGATTTTGTAGTGCAA-GAAA-GAA--GAAA------AAA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTC--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------AAT---------AGGTTTGGTTGCAATGGTT----------------------------TGTA--GTGCAATAGTT----------TTAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAATTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTC-TCCA-ACTGGATGCCA-TACA--CAAA----------GA-AA-AAAAGTGCA--AGTCGATTTTGTAGTGTGAAAAA----A--GAAA----G-AAA--AGAG-------A-----A---------ATG----AAAATAGTGCGAGGGAGTC--------CACGAC-----CCCTCT-----CTAATTGGTGGCA--------------------A------------GGTTTGGTTGTGATGGTT----------------------------TGTA--GTGCTATAGTT----------TAAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAATTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGCT-TCCT-ACTGGTCGCCA-CACA--CAA-----------GA-GA-AAAAGTGCA--AGTCGATTTTGTAGTGCGAAGAA-------------------A--TGAA---------------------AAATC---AAAAATAGTGTGT-GGAGTC-GCAG-TGCTCGAC-----CCCTTT-----CCAATTGGTGGCT--------------------G------------GTCTTGGTTGTAGTGGTT----------------------------TGTA--GTGTAA--ATT----------TAAGTGTATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AATTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TAT----G------------GAGGA-AAAAGTGCCA-GTTCGATTTTGTAGTGTGAAGAAAA-AA--A---------AAA--TGAGAAAATAAAAAAGAA---------AAG----AAA--AGTGCGAAGGAGTTCGTAA---CACGAC-----CCCTTT-----C--ATTGGTGGCA--------------------TGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGTAATAGTT----------TTAGTGTAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.ATTTGCAACCATTAAGTGT....................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1	0
....................GAAAATGCCATCCAATATGA................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................GT-T---------------------TA-TAT----G------------GAGGA-AAAAGTG.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................C--ATTGGTGGCA--------------------TGT---------AGGCTTGGT...........................................................................	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................AGTTCGTAA---CACGAC-----CCCTTT-----C--ATTGGT........................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....TGCAACCATTAAGTGTGAAAA...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTGTAATGGTT----------------------------TGTA--GTGTA..........................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................ATTGGTGGCA--------------------TGT---------AGGCTTGGTTGT........................................................................	25	1	1.00	1	0	0	1	0	0	0
..............................................................................................................AAGTGCCA-GTTCGATTTTGT.....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................GAAAATGCCATCCAATATGAAT..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................AAATAAAAAAGAA---------AAG----AA................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0

droBip1

AATTTGAAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TAT----AA------------AGGA-AAAAGTGCCA-GTTCGATTTTGTAGTGTGAA---------------AAAGAAAA--TGAG-------AAAAGAA---------AAA----AGAAAAGTGCTAGGGAGTTCGTAA---CACGAC-----CCC-TT-----CCAATTGGTGGCA--------------------TGT---------AGGCTTGGTTGTAATGGTT----------------------------TGTA--GTGTAATAGTT----------TTAGTGTAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------------AAGA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAA--A----TGA--AA----G------------------------------ATAATG---TAAAACAGTGCG-------C--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------TGT---------AGCTATGGTTGTAGTGGTT----------------------------TGTA--GTGAAGTAGCT------------GGTGTAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................ACAGTGCG-------C--------CACGAC-----CCCTTT-----.................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................A----G------------------------------ATAATG---TAAAACAGTGCG-------C--------.......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GGTGGCA--------------------TGT---------AGCTATGGTTG.........................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................GTAAAAATGCCATCAAGTATG.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................GT--TCCAA----GGTGCCA-TACA---G-------------AA...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTGTAGTGGTT----------------------------TGTA--GTGAAG.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AGT-AATGGT--TCCAA----GGTGCC........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............AGTGTAAAAATGCCATCAAGTATGAATA.............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....TGCAACCATTAAGTGTAAAAATGC............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................AATG---TAAAACAGTGCG-------C--------CACG...................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GCAACCATTAAGTGTAAAAATGC............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTTGTAGTGGTT----------------------------TGTA--GTG............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................TG---TAAAACAGTGCG-------C--------CACG...................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................CAATTGGTGGCA--------------------TGT---------AGCTT...............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TGGTGGCA--------------------TGT---------AGCTATGGT...........................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................AAGT-AATGGT--TCCAA----GGTGCC........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................CATCAAGTATGAATAATAAACT......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TGCCATCAAGTATGAATAATAAACTC.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------------AAGA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAA--A----TGA--AA----G------------------------------ATAATG---TAAAACAGTGCG-------C--------CACGAC-----CCCTTT-----CCAATTGGTGGCA--------------------TGT---------AGCTATGGTTGTAGTGGTT----------------------------TGTA--GTGAAGTAGCT------------GGTGTAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................CATCAAGTATGAATAATAAACTC.....................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GGTTGTAGTGGTT----------------------------TGTA--GTG............................	20	1	3.00	3	0	0	0	0	0	3
.................................................................................................................................................................................................................................................................................................................GTGGTT----------------------------TGTA--GTGAAGTAGC.....................	20	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................GTAGTGGTT----------------------------TGTA--GTGAAGT........................	20	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................TTGGTGGCA--------------------TGT---------AGCTATGG............................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................TCGATTTTGTAGTGCAAA--A----TG....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TGGTT----------------------------TGTA--GTGAAGTAGC.....................	19	1	1.00	1	0	1	0	0	0	0
...............AGTGTAAAAATGCCATCAA......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
....TGCAACCATTAAGTGTAAAAATGC............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................GTT----------------------------TGTA--GTGAAGTAGCT------------GGT.....	21	1	1.00	1	0	0	0	0	0	1

droWil2

AATTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGTCCTCCCA----GGTGCCAGTGCAAGCAAA----------TA-AA-AATAGTGCAA-AATCGATTTTGTAGTGTGAT-AAA-GA---GAAAA------AA--AGCA-------A-----A---------ATAATGGAAAATAGTGT--------C--------C--------CCCATTTT-----CCAATTGGTGGCAAAAGAATAAGAAAAAGAAAAAGT---------AGTTATGGTTGTAATGGTT----------------------------TGTAGAGTGTAATAGTA----------TAAGTGGAA-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................AAAATGCCATCAAGTATGAAT..............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
..................GTAAAAATGCCATCAAGTATGAAT..............................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................................................................................................................GTTATGGTTGTAATGGTT----------------------------TGTAGAGT.............................	26	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................AATAAGAAAAAGAAAAAGT---------AG..................................................................................	21	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................CAAAAGAATAAGAAAAAGAAAAAGT---------....................................................................................	25	1	1.00	1	0	0	1	0	0
..TTTGCAACCATTAAGTGTAAAAATGC............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................AATCGATTTTGTAGTGTGAT-AAA-GA---...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................AAAATGCCATCAAGTATGA................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................AAAAGT---------AGTTATGGTTGTAATGGT..................................................................	24	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................GTAATGGTT----------------------------TGTAGAGTGT...........................	19	1	1.00	1	0	0	1	0	0
AATTTGCAACCATTAAGTGTA...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..............................................AACTGTAAGT-AATGGTCCT......................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0

droVir3

AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA----A------------A-GA-AATAGTGCAAAAATCGATTTTGTAGTGAATG--A----TAA-----------AA--AAGG-------A-----A---------ATG---GAATATAGTGT------------------ACGGT-----TCCAAT-----CCAATTGGTGGCA--------------------TATATATTATGTAGT-----TTGT--TGGTTGCCAATAAATACATAGCAAGTT--C-ATTATA--GTGCAATAGTTT---------TTAGTGTAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....TGCAACCATTAAGTGTAAAAATGCCA..........................................................................................................................................................................................................................................................................................................................................................	26	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	5	1	0	3	1	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAGTTGCAACCATTAAGTGTA...................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AAAATGCCATCAAACATGA................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTAAGTGTAAAAATGCCATC........................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AAAAATCGATTTTGTAGTGA................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AAAAATGCCATCAAACATGAATAA............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCAACCATTAAGTGTAAAAATGCCAT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAGTTGCAACCATTAAGTGTAAAA................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AAAATGCCATCAAACATGAATAAT...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AATACATAGCAAGTT--C-ATTATA--GTGCA..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGTGT------------------ACGGT-----TCCAAT-----CCA..............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AACCATTAAGTGTAAAAATGCCAT.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..GTTGCAACCATTAAGTGTA...................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGT-AATGGT--TCCAA----GGTGCCA-TAC...................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GA-AATAGTGCAAAAATCGATTTTGTAGT..................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TG---GAATATAGTGT------------------ACGGT-----TCCA........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................ATATATTATGTAGT-----TTGT--TGG...................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GT--TGGTTGCCAATAAATACATAGCAAGT............................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGCAACCATTAAGTGTAAA.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GTGTAAAAATGCCATCAAACAT..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGTGAATG--A----TAA-----------AA--AAGG-------A-----A---------ATG---GA.................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTAAGTGTAAAAATGCCATCAAAC....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAAATCGATTTTGTAGTGA................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AAAATGCCATCAAACATGAAT..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGCAACCATTAAGTGTA...................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATGCCATCAAACATGAAT..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGCAACCATTAAGTGTAAAA................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTAAAAATGCCATCAAACATGAATA.............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GGT--TCCAA----GGTGCCA-TACA----A------------.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATGCCATCAAACATGAATAAT...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAGTGTAAAAATGCCATCAAA.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGTGTAAAAATGCCATCAAACATGAAT..............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAGTTGCAACCATTAAGTGTAAA.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGGT-----TCCAAT-----CCAATTGGTGGC.....................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAAACATGAATAATAAACTC.....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAGTTGCAACCATTAAGTTTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-TATGGTG-T--------GAAGCCA-TTTAA-TGAAATATAGTGATAAA----------AAA-AATCGATTTTGTAGTGAATA--A----TAAA---AAAAGAAAA--TGAA-------AATAAAAATAAAGAAAATG---GAAAATAGTGCACGG-ATACCGTAAGCAATCGGA-----TCCAAT-----CCAATTGGTGGCATA------------------AGT----TATGTAGT-----TTGT--TGGTTGCCAATAAATGCATATAAAGTTTCCTA-TGTA--GTGCTGTAGTT----------T-AGTGTACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....GCAACCATTAAGTTTAAAAATGCCATC........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CTA-TGTA--GTGCTGTAGTT----------T-AGT.....	22	1	1.00	1	1	0	0	0	0	0
.....................AAAATGCCATCAAACATGAAT..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................TGCCATCAAACATGAATAAT...........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................AAA----------AAA-AATCGATTTTGTAGTGAAT..............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................ATA------------------AGT----TATGTAGT-----TTGT--TGGTTGC...............................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................ATA------------------AGT----TATGTAGT-----TTGT--T.....................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................TAAACTGTAAGT-TATGGTG-T--------GAAGCC........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................TAGTGCACGG-ATACCGTAA..........................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................ATA------------------AGT----TATGTAGT-----TTGT--TGGT..................................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................T----TATGTAGT-----TTGT--TGGTTGC...............................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGTA--CCAA----GGAGCCA-TGCT--A--------------AAAA-AAAA--GCAAAAATCGATTTTGTAGTGAAAA--A----T-------------AA--AGAG--------------------GAAATG---GAAAATAGTGCACGGGTA-CCGTAGCCAATCGGA-----CCAAAT-----CCAATTGGTGGCA--------------------AATTAATTATGTAGT--TTGTTGT--TGGTTGCCAATAAAATCATGGCAAATTTTCTATAATA--GTGCAATAGTTT---------TAAGTGTAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................AAAATGCCATCAAACATGAATA.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
AAGTTGCAACCATTAAGTGTAAAA................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1
............TTAAGTGTAAAAATGCCATC........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dsi_29017

2r:8766134-8766283 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.44	-10.7	-10.44