ID:

dsi_29012

 Coordinate:

3l:11530073-11530333 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.9 -34.8 -34.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTCTGGAAGGATGTGCTCTTTTAAACGTACTTGGTGTCCGATATTGCAGGCTAGTCACCTCTGAATTTGTGTTAAAAGCTTTAAGTTTGTACAGTGGCAGAAAAATTAAAATCTATTTGCATGAGTCATCTGTTGATTGGCGCCTTCTTCATCTTCCGGTTCTGAATGGCAAGACGAACATTCAGTTCATAAACGGCTATTTAAAGAGTCCCATATTGATTAACAACGATTAAATACAAACTAACCAAATTTTTTTTTTCCAGTTTATTATTATTTAACCCTATAAGGTATTCTATGTATATTTCCAGAGATGATGGCATTTACAGGCTGCCGGGGCTCACGATATTATACAATGCTACC
**************************************************.........(((((((((((.(((..........(((((((((((((((....((((........))))......)))).)))(((((((.........(((......(((((((((((((.....((((.....)))).......)))))))..)))).)).....))).......))))))).)))))))))))))))))..........................(((......)))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................................................................................................................................................................................CAGGCTGCCGGGGCTCACGG................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCCAGAGATGATGACATTTACAGGC................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TGATGACATTTACAGGCTGCCGGGG........................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................AGTCACCTCTGAATTTGT.................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................ATTGCAGGCTAGTCACCTCTGAATTTG................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TTTCCAGAGATGATGACATTTACAGGC................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GCTCACGATATTATACAATGCT... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................TCTGAATGGCAAGACGAACATTAAGTT............................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATTTACAGGCTGCCGGGGCTCAC................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TAAGGTATTCTATGTATATTTCCAGAGA................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TACAGGCTGCCGGGGCTCACGAT................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................GGTTCTGAATGGAAGG........................................................................................................................................................................................... 16 2 20 0.30 6 0 0 0 0 0 0 6 0 0
.................................................................................................................................................................TCTGAATGGCAGGACGATTAT................................................................................................................................................................................... 21 3 7 0.29 2 0 0 0 0 0 0 0 2 0
....TGGAAGAATGTGGTATTTTAA................................................................................................................................................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................TGAGTCATCTGTTGCT............................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................TTTTTTCATCTTCCGGTTCTGG................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0
...............GTTCTTTTAAACGTAGTAGGT..................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................TTTTTTCCAGTTGATTGTT........................................................................................ 19 2 14 0.07 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................GCCGGTTCTGAATTGCA............................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................ATCTTCCGGCTCTGGATCGC.............................................................................................................................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TCCAGAGATGAGGGGA......................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GAAGACCTTCCTACACGAGAAAATTTGCATGAACCACAGGCTATAACGTCCGATCAGTGGAGACTTAAACACAATTTTCGAAATTCAAACATGTCACCGTCTTTTTAATTTTAGATAAACGTACTCAGTAGACAACTAACCGCGGAAGAAGTAGAAGGCCAAGACTTACCGTTCTGCTTGTAAGTCAAGTATTTGCCGATAAATTTCTCAGGGTATAACTAATTGTTGCTAATTTATGTTTGATTGGTTTAAAAAAAAAAGGTCAAATAATAATAAATTGGGATATTCCATAAGATACATATAAAGGTCTCTACTACCGTAAATGTCCGACGGCCCCGAGTGCTATAATATGTTACGATGG
**************************************************.........(((((((((((.(((..........(((((((((((((((....((((........))))......)))).)))(((((((.........(((......(((((((((((((.....((((.....)))).......)))))))..)))).)).....))).......))))))).)))))))))))))))))..........................(((......)))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 GSM343915
embryo
................................................................................................................AGATAAAACTACTCAGAAGAC.................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCGGGGTATAACTA............................................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................AAAAAAAAGGGCAAAGAATTAT....................................................................................... 22 3 9 0.11 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TCCGGGTATAACTAGTTCT....................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0
..........................................................................................................................................................................................................ATTTCTCGGGATATAAC.............................................................................................................................................. 17 2 12 0.08 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................AAAAAAAAAGGTCAA............................................................................................... 15 0 13 0.08 1 1 0 0 0 0 0 0
....ATCTGCCCACACGAGAAAA.................................................................................................................................................................................................................................................................................................................................................. 19 3 15 0.07 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAAAAAAAGGGCAAAGAAT.......................................................................................... 19 2 19 0.05 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................AAAAAAAATGTCAATTAATA......................................................................................... 20 2 19 0.05 1 0 0 0 0 0 1 0
............ACACGAGAAAATTTA.............................................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GGGATATTCCATTAGGAA................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAAAAAAAAAGGTCTAATC............................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:29 AM