ID:

dsi_28997

 Coordinate:

2r:5789442-5789591 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.5 -13.5 -13.4

Flybase annnotation

five_prime_UTR [2r_5789632_5790125_-]; CDS [2r_5789592_5789631_-]; exon [2r_5789592_5790125_-]; intron [2r_5788809_5789591_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTGCCCAGCATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTTCCAAAGGTAAGGATGCGTGGGTTTCCGGGTGACGAAATGGCAAAACTTGAGGTCTTTTACACGCCCTAGCAATCTGTGTTTTCGTTGCCGCCTCCATTATCAGCCTTAGGCATGTGCTGGAGTAAACTAATACCATATCACCAGATCGTAGGCTCGCCTTGACAGCCCTAATCGCATCTGACGCCGACCAAGCCGAAGATTATCAG
*******************************************************************************************************************(((((((.....((((....(((((.(((..(((...)))..))).))))).....)))).......)).)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.......................................GTTTTCCAAAGGTAAGGAT................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCGTGGGCTCGCCTTGACAGCC....................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATCACCAGATCGTAGGCTCG.................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCCCTAATCGCATCTGACG....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATATCACCAGATCGTAGGCTC................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TAAGGATGCGTTGGTTTCGGTG................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......AGCATGTTGAAGTCGAAGCAGTTGC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CACCAGATCGTAGGCTCGC................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........TGTTGAAGTCGAAGCAGTTGCTCCAA..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................GAAAGGATGCGTGGGTT....................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................ATCTGTGTTTTCGTTGCCGCC.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACCAGATCGTAGGCTCGCCTT.............................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................TGTGTTTTCGTTGCCGCCTCC............................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................AAGGATGCGTGGGTTC...................................................................................................................................................................................... 16 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
....................................................AAGGATGCGTGGGTT....................................................................................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................GTCAGGATGCGTGGGTTC...................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................AGGATGCGTGGGTTC...................................................................................................................................................................................... 15 1 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0
...........TGATGAAGTCGAAGCA............................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..................................................GTCAGGTTGCGTGGGTT....................................................................................................................................................................................... 17 2 14 0.14 2 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCGCATCTGACCCGGACC................. 19 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATCGAATCTGGCGCAGACCA................ 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TAAGCATGCGTGGGTTC...................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
...................................................AAAGGATGCGTGGGT........................................................................................................................................................................................ 15 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CATGTGCTGGAGAATACTG............................................................................. 19 3 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0
..............................................AAATTTAAGGATTCGTGGG......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................TAACGATCTGTGTTTCCGT......................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................GTTTCCGGGGGACGTA.......................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATCGAATCTGGCGCAGACC................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCACGGGTCGTACAACTTCAGCTTCGTCAACGAGGTTGTCAAAAGGTTTCCATTCCTACGCACCCAAAGGCCCACTGCTTTACCGTTTTGAACTCCAGAAAATGTGCGGGATCGTTAGACACAAAAGCAACGGCGGAGGTAATAGTCGGAATCCGTACACGACCTCATTTGATTATGGTATAGTGGTCTAGCATCCGAGCGGAACTGTCGGGATTAGCGTAGACTGCGGCTGGTTCGGCTTCTAATAGTC
**************************************************(((((((.....((((....(((((.(((..(((...)))..))).))))).....)))).......)).)))))..........******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body
...................................................AGTCCTACTCACCCAAAGG.................................................................................................................................................................................... 19 2 2 2.00 4 4 0 0 0 0 0
.....................................................................................................................................................................................................................................CTGGTTCGGCTTCTAATAGTC 21 0 1 2.00 2 0 2 0 0 0 0
...................................................AGTCCTACTCACCCAAAG..................................................................................................................................................................................... 18 2 3 1.33 4 4 0 0 0 0 0
...CGGGTCGTACAACTTCAGCTT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
............GAACTTCGGCTTCGTAAACGAGGT...................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
....................................................................GGCCCACTGCTTTACCGTT................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................TAGTCCTACTCACCCAAAGG.................................................................................................................................................................................... 20 3 6 0.50 3 3 0 0 0 0 0
...................................................AGTCCTACTCACCCAAA...................................................................................................................................................................................... 17 2 7 0.43 3 3 0 0 0 0 0
........................CGTCTACCAGCTTGTCAAAAGGT........................................................................................................................................................................................................... 23 3 7 0.43 3 0 0 3 0 0 0
......................................................................................................................................................................................................................................TGGTTCCGCTGCTTATAGTC 20 3 5 0.40 2 0 0 2 0 0 0
........................................................................................................................................................................................GGTCTCGCATCCGAACGAAAC............................................. 21 3 3 0.33 1 0 0 1 0 0 0
..............................................................................................................................GCAACGGTGGAGGTATTAG......................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0
..............................................................................................................................GCAACGGTGGAGGGAATA.......................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................GTAGACTGCGACTGGCT............... 17 2 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................................................................................CAGCGGAACTTTCGGCATTA.................................. 20 3 6 0.17 1 0 0 0 0 0 1
..........................................AAGGCTTCCATGCCTCCG.............................................................................................................................................................................................. 18 3 20 0.15 3 3 0 0 0 0 0
...................................................AGTCCTACTCATCCAAAGG.................................................................................................................................................................................... 19 3 17 0.12 2 2 0 0 0 0 0
..................................................TAGTCCTACTCACCCAAAG..................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................................GGTCTCGCATCCGAACG................................................. 17 2 11 0.09 1 0 0 0 1 0 0
.................................................................................................................................................................................TTAGAGTGGTCTAGCAT........................................................ 17 2 14 0.07 1 0 0 1 0 0 0
..................CAGGTTCGTTAACGAGGT...................................................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 1 0
............CCACTTCTGCTTCGTCAA............................................................................................................................................................................................................................ 18 2 14 0.07 1 1 0 0 0 0 0
..................................................................................................AAAATGTGCGAGATTGT....................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0
...................................................AGTCCTACTCACCCAAATG.................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................AAAGGAACGGCGCAGGT.............................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0
....................................................................................................................AGACTCACCAGCAACGGC.................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0
...................................................AGTCCTACTCACGCAAAGG.................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 11:00 PM