ID:

dsi_28990

Coordinate:

3l:8149061-8149210 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-29.2	-29.0	-29.0

Flybase annnotation

exon [3l_8148608_8149060_+]; CDS [3l_8148608_8149060_+]; intron [3l_8149061_8149457_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTCAGGCGCCAACTACCCTGAGCGAGGCCAGCTCCCCCAGCGGCAATCAGGTAACCTAGAGTACAGTGATCCGGCCAATCTGTTATGACTGAAATTTCTTCAGTTTATTATTTTTAAGTTTTTTATGTATTATTTCTATAAATAAGAGGTGGGTTATCAGCCCACGAGCTGAGCTCCAGGAATGTTTTCGAAATACTTTAAGCTAACTGGGAACACCCAGCCATTACTTATCATTGATTAATTTAATTGC ************************************************....(((.((((.((((....(((.....)))....(((((((.....)))))))..............(((((((.(((.......))).)))))))(((((((...)))))))..)))).)))).)))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...................................................................GATCCGGCCAATCTGTTATGACTGA..............................................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0	0	0	0
......................................................................CCGGCCAATCTGTTATGACTGG..............................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0
..............ACCCTGAGCGAGGCCAGCT.........................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................GTACAGTGATCCGGCCAATCTGT.......................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................AATCTGTTATGACTGAAA............................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
....................................................AAACTAGAGTATAGTGATCCGGT...............................................................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0
...................................................TAACCTAGAGTACAGTGATCCGGCC..............................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................GTACAGTGATCCGGCCAATCTGTTAT....................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCGAAATACTTTAAGCTAACTGGGAA.....................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0
...............................................................................CTGTTATGACTGAAATTTCT.......................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................GGCCAATCTGTTATGACTGA..............................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................GTGATCCGGCCAATCTGTTATGACTGA..............................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................AATACTTTAAGCTAACTGG........................................	19	0	1	1.00	1	0	0	0	0	0	0	1	0
................................................................AGTGATCCGGCCAATCTGTTATGACT................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0
...............................................................................................TTCTTCGGTTTTTTATTTTTAA.....................................................................................................................................	22	2	2	0.50	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................TGGGGACACGCAGCCATTA........................	19	2	2	0.50	1	0	0	0	1	0	0	0	0
.........................................................................................................................................AGACATAAGAGGTGGGTT...............................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................TTCTAACTCGGAACACCCAG..............................	20	3	3	0.33	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................ATACGTTAAGCTAACT..........................................	16	1	3	0.33	1	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................TAACGGGGAAGACCCAG..............................	17	2	4	0.25	1	0	0	0	1	0	0	0	0
...............................................................................CTGTTATGACTGTAA............................................................................................................................................................	15	1	11	0.09	1	0	0	1	0	0	0	0	0
.......................................................CTAGAGTACTGTGTTC...................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1
........................................................TAGAGCATAGTGATCC..................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CAGTCCGCGGTTGATGGGACTCGCTCCGGTCGAGGGGGTCGCCGTTAGTCCATTGGATCTCATGTCACTAGGCCGGTTAGACAATACTGACTTTAAAGAAGTCAAATAATAAAAATTCAAAAAATACATAATAAAGATATTTATTCTCCACCCAATAGTCGGGTGCTCGACTCGAGGTCCTTACAAAAGCTTTATGAAATTCGATTGACCCTTGTGGGTCGGTAATGAATAGTAACTAATTAAATTAACG ************************************************....(((.((((.((((....(((.....)))....(((((((.....)))))))..............(((((((.(((.......))).)))))))(((((((...)))))))..)))).)))).)))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	GSM343915 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body
.....................................................TGGATCTCACTTCTCTAGGC.................................................................................................................................................................................	20	3	1	1.00	1	1	0	0	0	0	0	0
......................................TCGCCGTTAGTCCATTGGATC...............................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................GATCTCATGTCACTAGGCCG...............................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................GGTGCTCGACTCTAGTTCCTTAT..................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................TCGAGGTCTTTATAAATGCTTT.........................................................	22	3	4	0.25	1	0	0	0	1	0	0	0
.............................................................................................TCAAGAAGTCAAATAGTAA..........................................................................................................................................	19	2	5	0.20	1	0	0	0	0	0	1	0
.............................................................................................................................................................GTCGGGTGCTCAACTCC............................................................................	17	2	7	0.14	1	0	0	0	0	1	0	0
........................................................................................................................AAAATTCTTAATAAAGATCTTTA...........................................................................................................	23	3	8	0.13	1	0	0	0	0	0	0	1
...............GGGACTCGATGCGGTCG..........................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0
...........................................................................................................................................................CTGTCGGGTGCTCAACTC.............................................................................	18	3	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................................................................................TCAACTCGAGGTCCT.....................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:43 AM